Update to MPICH2 1.4.1p1

===============================================================================
                               Changes in 1.4.1
===============================================================================

 # OVERALL: Several improvements to the ARMCI API implementation
   within MPICH2.

 # Build system: Added beta support for DESTDIR while installing
   MPICH2.

 # PM/PMI: Upgrade hwloc to 1.2.1rc2.

 # PM/PMI: Initial support for the PBS launcher.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r8675:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.4.1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.4.1?action=follow_copy&rev=HEAD&stop_rev=8675&mode=follow_copy


===============================================================================
                               Changes in 1.4
===============================================================================

 # OVERALL: Improvements to fault tolerance for collective
   operations. Thanks to Rui Wang @ ICT for reporting several of these
   issues.

 # OVERALL: Improvements to the universe size detection. Thanks to
   Yauheni Zelenko for reporting this issue.

 # OVERALL: Bug fixes for Fortran attributes on some systems. Thanks
   to Nicolai Stange for reporting this issue.

 # OVERALL: Added new ARMCI API implementation (experimental).

 # OVERALL: Added new MPIX_Group_comm_create function to allow
   non-collective creation of sub-communicators.

 # FORTRAN: Bug fixes in the MPI_DIST_GRAPH_ Fortran bindings.

 # PM/PMI: Support for a manual "none" launcher in Hydra to allow for
   higher-level tools to be built on top of Hydra. Thanks to Justin
   Wozniak for reporting this issue, for providing several patches for
   the fix, and testing it.

 # PM/PMI: Bug fixes in Hydra to handle non-uniform layouts of hosts
   better. Thanks to the MVAPICH group at OSU for reporting this issue
   and testing it.

 # PM/PMI: Bug fixes in Hydra to handle cases where only a subset of
   the available launchers or resource managers are compiled
   in. Thanks to Satish Balay @ Argonne for reporting this issue.

 # PM/PMI: Support for a different username to be provided for each
   host; this only works for launchers that support this (such as
   SSH).

 # PM/PMI: Bug fixes for using Hydra on AIX machines. Thanks to
   Kitrick Sheets @ NCSA for reporting this issue and providing the
   first draft of the patch.

 # PM/PMI: Bug fixes in memory allocation/management for environment
   variables that was showing up on older platforms. Thanks to Steven
   Sutphen for reporting the issue and providing detailed analysis to
   track down the bug.

 # PM/PMI: Added support for providing a configuration file to pick
   the default options for Hydra. Thanks to Saurabh T. for reporting
   the issues with the current implementation and working with us to
   improve this option.

 # PM/PMI: Improvements to the error code returned by Hydra.

 # PM/PMI: Bug fixes for handling "=" in environment variable values in
   hydra.

 # PM/PMI: Upgrade the hwloc version to 1.2.

 # COLLECTIVES: Performance and memory usage improvements for MPI_Bcast
   in certain cases.

 # VALGRIND: Fix incorrect Valgrind client request usage when MPICH2 is
   built for memory debugging.

 # BUILD SYSTEM: "--enable-fast" and "--disable-error-checking" are once
   again valid simultaneous options to configure.

 # TEST SUITE: Several new tests for MPI RMA operations.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r7838:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.4

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.4?action=follow_copy&rev=HEAD&stop_rev=7838&mode=follow_copy


===============================================================================
                               Changes in 1.3.2
===============================================================================

 # OVERALL: MPICH2 now recognizes the OSX mach_absolute_time as a
   native timer type.

 # OVERALL: Performance improvements to MPI_Comm_split on large
   systems.

 # OVERALL: Several improvements to error returns capabilities in the
   presence of faults.

 # PM/PMI: Several fixes and improvements to Hydra's process binding
   capability.

 # PM/PMI: Upgrade the hwloc version to 1.1.1.

 # PM/PMI: Allow users to sort node lists allocated by resource
   managers in Hydra.

 # PM/PMI: Improvements to signal handling. Now Hydra respects Ctrl-Z
   signals and passes on the signal to the application.

 # PM/PMI: Improvements to STDOUT/STDERR handling including improved
   support for rank prepending on output. Improvements to STDIN
   handling for applications being run in the background.

 # PM/PMI: Split the bootstrap servers into "launchers" and "resource
   managers", allowing the user to pick a different resource manager
   from the launcher. For example, the user can now pick the "SLURM"
   resource manager and "SSH" as the launcher.

 # PM/PMI: The MPD process manager is deprecated.

 # PM/PMI: The PLPA process binding library support is deprecated.

 # WINDOWS: Adding support for gfortran and 64-bit gcc libs.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r7457:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.3.2

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.3.2?action=follow_copy&rev=HEAD&stop_rev=7457&mode=follow_copy

1 files changed, 9 insertions, 9 deletions

diff --git a/parallel/mpi-ch/patches/patch-aa b/parallel/mpi-ch/patches/patch-aa
index c840e77f3f7..e3a9aa986c4 100644
--- a/parallel/mpi-ch/patches/patch-aa
+++ b/parallel/mpi-ch/patches/patch-aa
@@ -1,10 +1,10 @@
-$NetBSD: patch-aa,v 1.10 2010/12/17 02:47:18 asau Exp $
+$NetBSD: patch-aa,v 1.11 2012/01/11 09:43:26 asau Exp $
 
 Install configuration files into example directory.
 
---- src/env/Makefile.in.orig	2010-11-17 19:51:55.000000000 +0300
-+++ src/env/Makefile.in	2010-12-17 02:06:35.000000000 +0300
-@@ -19,6 +19,8 @@
+--- src/env/Makefile.in.orig	2011-09-01 22:55:45.000000000 +0400
++++ src/env/Makefile.in	2011-11-09 21:08:59.000000000 +0400
+@@ -21,6 +21,8 @@
  srcdir          = @srcdir@
  abs_srcdir      = @abs_srcdir@
  sysconfdir      = @sysconfdir@
@@ -13,10 +13,10 @@ Install configuration files into example directory.
  DEFS            = @DEFS@ -I. -I${srcdir}
  CPPFLAGS        = @CPPFLAGS@
  LIBS            = @LIBS@
-@@ -95,15 +97,15 @@
+@@ -97,15 +99,15 @@
+ 	if [ ! -d ${DESTDIR}${bindir} ] ; then $(MKDIR_P) ${DESTDIR}${bindir} ; fi
  	$(INSTALL_PROGRAM) $(INSTALL_STRIP_FLAG)  mpich2version ${DESTDIR}${bindir}/mpich2version
  	$(INSTALL_SCRIPT)  mpicc ${DESTDIR}${bindir}/mpicc
- 	$(INSTALL_SCRIPT)  parkill ${DESTDIR}${bindir}/parkill
 -	if [ ! -d ${DESTDIR}${sysconfdir} ] ; then $(MKDIR_P) ${DESTDIR}${sysconfdir} ; fi
 -	$(INSTALL_DATA)  mpixxx_opts.conf ${DESTDIR}${sysconfdir}/mpixxx_opts.conf
 -	$(INSTALL_DATA)  mpicc.conf ${DESTDIR}${sysconfdir}/mpicc.conf
@@ -32,13 +32,13 @@ Install configuration files into example directory.
 +	if [ -s mpicxx.conf ] ; then $(INSTALL_DATA)  mpicxx.conf ${DESTDIR}${exampledir}/mpicxx.conf ; fi
 +	if [ -s mpif77.conf ] ; then $(INSTALL_DATA)  mpif77.conf ${DESTDIR}${exampledir}/mpif77.conf ; fi
 +	if [ -s mpif90.conf ] ; then $(INSTALL_DATA)  mpif90.conf ${DESTDIR}${exampledir}/mpif90.conf ; fi
- 	${MAKE} install-postamble
+ 	${MAKE} DESTDIR=${DESTDIR} prefix=${prefix} exec_prefix=${exec_prefix} bindir=${bindir} libdir=${libdir} includedir=${includedir} install-postamble
  
  install-strip:
-@@ -112,14 +114,14 @@
+@@ -113,14 +115,14 @@
+ uninstall: 
  	-rm -f ${DESTDIR}${bindir}/mpich2version
  	-rm -f ${DESTDIR}${bindir}/mpicc
- 	-rm -f ${DESTDIR}${bindir}/parkill
 -	-rm -f ${DESTDIR}${sysconfdir}/mpixxx_opts.conf
 -	-rm -f ${DESTDIR}${sysconfdir}/mpicc.conf
 +	-rm -f ${DESTDIR}${exampledir}/mpixxx_opts.conf