Import OpenMPI 1.4 as parallel/openmpi.

OpenMPI is open source MPI-2 implementation.
author: asau <asau@pkgsrc.org> 2009-12-12 23:30:01 +0000
committer: asau <asau@pkgsrc.org> 2009-12-12 23:30:01 +0000
commit: 29f12907d031881859277f8cabbab0ab000ef3ac (patch)
tree: c94b5caac417ac95d4a9e497a92273e0cf82e4dd /parallel
parent: 6e3ff94bf730cf69ca2c50249910bb726ebf4706 (diff)
download: pkgsrc-29f12907d031881859277f8cabbab0ab000ef3ac.tar.gz
18 files changed, 1122 insertions, 0 deletions
diff --git a/parallel/openmpi/DESCR b/parallel/openmpi/DESCR
new file mode 100644
index 00000000000..df10ebe8f58
--- /dev/null
+++ b/parallel/openmpi/DESCR
@@ -0,0 +1,28 @@
+The Open MPI Project is an open source MPI-2 implementation
+that is developed and maintained by a consortium of academic,
+research, and industry partners. Open MPI is therefore able to
+combine the expertise, technologies, and resources from all
+across the High Performance Computing community in order to
+build the best MPI library available. Open MPI offers advantages
+for system and software vendors, application developers and
+computer science researchers.
+
+Features implemented or in short-term development for Open MPI
+include:
+
+  - Full MPI-2 standards conformance
+  - Thread safety and concurrency
+  - Dynamic process spawning
+  - Network and process fault tolerance
+  - Support network heterogeneity
+  - Single library supports all networks
+  - Run-time instrumentation
+  - Many job schedulers supported
+  - Many OS's supported (32 and 64 bit)
+  - Production quality software
+  - High performance on all platforms
+  - Portable and maintainable
+  - Tunable by installers and end-users
+  - Component-based design, documented APIs
+  - Active, responsive mailing list
+  - Open source license based on the BSD license
diff --git a/parallel/openmpi/Makefile b/parallel/openmpi/Makefile
new file mode 100644
index 00000000000..b112f41f8c9
--- /dev/null
+++ b/parallel/openmpi/Makefile
@@ -0,0 +1,31 @@
+# $NetBSD: Makefile,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+DISTNAME=	openmpi-1.4
+CATEGORIES=	parallel
+MASTER_SITES=	http://www.open-mpi.org/software/ompi/v1.4/downloads/
+EXTRACT_SUFX=	.tar.bz2
+
+MAINTAINER=	asau@inbox.ru
+HOMEPAGE=	http://www.open-mpi.org/
+COMMENT=	Open source MPI-2 implementation
+
+PKG_DESTDIR_SUPPORT=	user-destdir
+
+GNU_CONFIGURE=		yes
+USE_LANGUAGES=		c c++ fortran
+USE_LIBTOOL=		yes
+LIBTOOL_OVERRIDE=	${WRKSRC}/libtool
+SHLIBTOOL_OVERRIDE=	${WRKSRC}/config/libtool.m4
+
+CONFIGURE_ARGS+=	--disable-mpi-f90
+CONFIGURE_ARGS+=	--with-wrapper-ldflags="-L${PREFIX}/lib ${LINKER_RPATH_FLAG}${PREFIX}/lib"
+CONFIGURE_ENV+=		ompi_cv_f77_have_INTEGERp8=no	# no "INTEGER*8"??
+BUILD_MAKE_FLAGS=	LIBLTDL=$(BUILDLINK_PREFIX.libltdl)/lib/libltdl.la # configure doesn't allow overriding it
+CONFIGURE_ARGS+=	OPAL_HAVE_LTDL_ADVISE=0
+
+.include "options.mk"
+
+TEST_TARGET=	check
+
+.include "../../devel/libltdl/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/parallel/openmpi/PLIST b/parallel/openmpi/PLIST
new file mode 100644
index 00000000000..e8ed2ce685e
--- /dev/null
+++ b/parallel/openmpi/PLIST
@@ -0,0 +1,508 @@
+@comment $NetBSD: PLIST,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+bin/mpiCC
+bin/mpic++
+bin/mpicc
+bin/mpicxx
+bin/mpiexec
+bin/mpif77
+bin/mpif90
+bin/mpirun
+bin/ompi-checkpoint
+bin/ompi-clean
+bin/ompi-iof
+bin/ompi-ps
+bin/ompi-restart
+bin/ompi-server
+bin/ompi_info
+bin/opal_wrapper
+bin/orte-clean
+bin/orte-iof
+bin/orte-ps
+bin/orted
+bin/orterun
+include/mpi.h
+include/mpif-common.h
+include/mpif-config.h
+include/mpif-mpi-io.h
+include/mpif.h
+include/openmpi/ompi/mpi/cxx/comm.h
+include/openmpi/ompi/mpi/cxx/comm_inln.h
+include/openmpi/ompi/mpi/cxx/constants.h
+include/openmpi/ompi/mpi/cxx/datatype.h
+include/openmpi/ompi/mpi/cxx/datatype_inln.h
+include/openmpi/ompi/mpi/cxx/errhandler.h
+include/openmpi/ompi/mpi/cxx/errhandler_inln.h
+include/openmpi/ompi/mpi/cxx/exception.h
+include/openmpi/ompi/mpi/cxx/file.h
+include/openmpi/ompi/mpi/cxx/file_inln.h
+include/openmpi/ompi/mpi/cxx/functions.h
+include/openmpi/ompi/mpi/cxx/functions_inln.h
+include/openmpi/ompi/mpi/cxx/group.h
+include/openmpi/ompi/mpi/cxx/group_inln.h
+include/openmpi/ompi/mpi/cxx/info.h
+include/openmpi/ompi/mpi/cxx/info_inln.h
+include/openmpi/ompi/mpi/cxx/intercomm.h
+include/openmpi/ompi/mpi/cxx/intercomm_inln.h
+include/openmpi/ompi/mpi/cxx/intracomm.h
+include/openmpi/ompi/mpi/cxx/intracomm_inln.h
+include/openmpi/ompi/mpi/cxx/mpicxx.h
+include/openmpi/ompi/mpi/cxx/op.h
+include/openmpi/ompi/mpi/cxx/op_inln.h
+include/openmpi/ompi/mpi/cxx/request.h
+include/openmpi/ompi/mpi/cxx/request_inln.h
+include/openmpi/ompi/mpi/cxx/status.h
+include/openmpi/ompi/mpi/cxx/status_inln.h
+include/openmpi/ompi/mpi/cxx/topology.h
+include/openmpi/ompi/mpi/cxx/topology_inln.h
+include/openmpi/ompi/mpi/cxx/win.h
+include/openmpi/ompi/mpi/cxx/win_inln.h
+lib/libmca_common_sm.la
+lib/libmpi.la
+lib/libmpi_cxx.la
+lib/libmpi_f77.la
+lib/libopen-pal.la
+lib/libopen-rte.la
+lib/openmpi/libompi_dbg_msgq.la
+lib/openmpi/mca_allocator_basic.la
+lib/openmpi/mca_allocator_bucket.la
+lib/openmpi/mca_bml_r2.la
+lib/openmpi/mca_btl_self.la
+lib/openmpi/mca_btl_sm.la
+lib/openmpi/mca_btl_tcp.la
+lib/openmpi/mca_carto_auto_detect.la
+lib/openmpi/mca_carto_file.la
+lib/openmpi/mca_coll_basic.la
+lib/openmpi/mca_coll_hierarch.la
+lib/openmpi/mca_coll_inter.la
+lib/openmpi/mca_coll_self.la
+lib/openmpi/mca_coll_sm.la
+lib/openmpi/mca_coll_sync.la
+lib/openmpi/mca_coll_tuned.la
+lib/openmpi/mca_crs_none.la
+lib/openmpi/mca_dpm_orte.la
+lib/openmpi/mca_errmgr_default.la
+lib/openmpi/mca_ess_env.la
+lib/openmpi/mca_ess_hnp.la
+lib/openmpi/mca_ess_singleton.la
+lib/openmpi/mca_ess_tool.la
+lib/openmpi/mca_filem_rsh.la
+lib/openmpi/mca_grpcomm_bad.la
+lib/openmpi/mca_grpcomm_basic.la
+lib/openmpi/mca_io_romio.la
+lib/openmpi/mca_iof_hnp.la
+lib/openmpi/mca_iof_orted.la
+lib/openmpi/mca_iof_tool.la
+lib/openmpi/mca_maffinity_first_use.la
+lib/openmpi/mca_mpool_fake.la
+lib/openmpi/mca_mpool_rdma.la
+lib/openmpi/mca_mpool_sm.la
+lib/openmpi/mca_notifier_syslog.la
+lib/openmpi/mca_odls_default.la
+lib/openmpi/mca_oob_tcp.la
+lib/openmpi/mca_osc_pt2pt.la
+lib/openmpi/mca_osc_rdma.la
+lib/openmpi/mca_paffinity_posix.la
+lib/openmpi/mca_plm_rsh.la
+lib/openmpi/mca_pml_cm.la
+lib/openmpi/mca_pml_csum.la
+lib/openmpi/mca_pml_ob1.la
+lib/openmpi/mca_pml_v.la
+lib/openmpi/mca_pubsub_orte.la
+lib/openmpi/mca_rcache_vma.la
+lib/openmpi/mca_rmaps_load_balance.la
+lib/openmpi/mca_rmaps_rank_file.la
+lib/openmpi/mca_rmaps_round_robin.la
+lib/openmpi/mca_rmaps_seq.la
+lib/openmpi/mca_rml_oob.la
+lib/openmpi/mca_routed_binomial.la
+lib/openmpi/mca_routed_direct.la
+lib/openmpi/mca_routed_linear.la
+lib/openmpi/mca_topo_unity.la
+lib/openmpi/mca_vprotocol_pessimist.la
+man/man1/mpiCC.1
+man/man1/mpic++.1
+man/man1/mpicc.1
+man/man1/mpicxx.1
+man/man1/mpiexec.1
+man/man1/mpif77.1
+man/man1/mpif90.1
+man/man1/mpirun.1
+man/man1/ompi-checkpoint.1
+man/man1/ompi-clean.1
+man/man1/ompi-iof.1
+man/man1/ompi-ps.1
+man/man1/ompi-restart.1
+man/man1/ompi-server.1
+man/man1/ompi_info.1
+man/man1/opal_wrapper.1
+man/man1/orte-clean.1
+man/man1/orte-iof.1
+man/man1/orte-ps.1
+man/man1/orted.1
+man/man1/orterun.1
+man/man3/MPI.3
+man/man3/MPI_Abort.3
+man/man3/MPI_Accumulate.3
+man/man3/MPI_Add_error_class.3
+man/man3/MPI_Add_error_code.3
+man/man3/MPI_Add_error_string.3
+man/man3/MPI_Address.3
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+man/man3/MPI_Allgatherv.3
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+man/man3/MPI_Errhandler_set.3
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+man/man3/MPI_Unpack.3
+man/man3/MPI_Unpack_external.3
+man/man3/MPI_Unpublish_name.3
+man/man3/MPI_Wait.3
+man/man3/MPI_Waitall.3
+man/man3/MPI_Waitany.3
+man/man3/MPI_Waitsome.3
+man/man3/MPI_Win_c2f.3
+man/man3/MPI_Win_call_errhandler.3
+man/man3/MPI_Win_complete.3
+man/man3/MPI_Win_create.3
+man/man3/MPI_Win_create_errhandler.3
+man/man3/MPI_Win_create_keyval.3
+man/man3/MPI_Win_delete_attr.3
+man/man3/MPI_Win_f2c.3
+man/man3/MPI_Win_fence.3
+man/man3/MPI_Win_free.3
+man/man3/MPI_Win_free_keyval.3
+man/man3/MPI_Win_get_attr.3
+man/man3/MPI_Win_get_errhandler.3
+man/man3/MPI_Win_get_group.3
+man/man3/MPI_Win_get_name.3
+man/man3/MPI_Win_lock.3
+man/man3/MPI_Win_post.3
+man/man3/MPI_Win_set_attr.3
+man/man3/MPI_Win_set_errhandler.3
+man/man3/MPI_Win_set_name.3
+man/man3/MPI_Win_start.3
+man/man3/MPI_Win_test.3
+man/man3/MPI_Win_unlock.3
+man/man3/MPI_Win_wait.3
+man/man3/MPI_Wtick.3
+man/man3/MPI_Wtime.3
+man/man3/OpenMPI.3
+man/man7/ompi_crcp.7
+man/man7/opal_crs.7
+man/man7/orte_filem.7
+man/man7/orte_hosts.7
+man/man7/orte_snapc.7
+share/openmpi/amca-param-sets/example.conf
+share/openmpi/examples/openmpi-default-hostfile
+share/openmpi/examples/openmpi-mca-params.conf
+share/openmpi/examples/openmpi-totalview.tcl
+share/openmpi/help-coll-sync.txt
+share/openmpi/help-dash-host.txt
+share/openmpi/help-ess-base.txt
+share/openmpi/help-hostfile.txt
+share/openmpi/help-mca-base.txt
+share/openmpi/help-mca-bml-r2.txt
+share/openmpi/help-mca-coll-base.txt
+share/openmpi/help-mca-param.txt
+share/openmpi/help-mpi-api.txt
+share/openmpi/help-mpi-btl-base.txt
+share/openmpi/help-mpi-common-sm.txt
+share/openmpi/help-mpi-errors.txt
+share/openmpi/help-mpi-runtime.txt
+share/openmpi/help-mpool-base.txt
+share/openmpi/help-odls-default.txt
+share/openmpi/help-ompi-crcp-base.txt
+share/openmpi/help-ompi-dpm-base.txt
+share/openmpi/help-ompi-dpm-orte.txt
+share/openmpi/help-ompi-pubsub-orte.txt
+share/openmpi/help-ompi-server.txt
+share/openmpi/help-ompi_info.txt
+share/openmpi/help-opal-carto-file.txt
+share/openmpi/help-opal-crs-base.txt
+share/openmpi/help-opal-crs-none.txt
+share/openmpi/help-opal-runtime.txt
+share/openmpi/help-opal-util.txt
+share/openmpi/help-opal-wrapper.txt
+share/openmpi/help-orte-clean.txt
+share/openmpi/help-orte-filem-base.txt
+share/openmpi/help-orte-filem-rsh.txt
+share/openmpi/help-orte-iof.txt
+share/openmpi/help-orte-odls-base.txt
+share/openmpi/help-orte-ps.txt
+share/openmpi/help-orte-rmaps-base.txt
+share/openmpi/help-orte-rmaps-lb.txt
+share/openmpi/help-orte-rmaps-rr.txt
+share/openmpi/help-orte-rmaps-seq.txt
+share/openmpi/help-orte-runtime.txt
+share/openmpi/help-orte-snapc-base.txt
+share/openmpi/help-orted.txt
+share/openmpi/help-orterun.txt
+share/openmpi/help-plm-base.txt
+share/openmpi/help-plm-rsh.txt
+share/openmpi/help-ras-base.txt
+share/openmpi/help-rmaps_rank_file.txt
+share/openmpi/mpiCC-wrapper-data.txt
+share/openmpi/mpic++-wrapper-data.txt
+share/openmpi/mpicc-wrapper-data.txt
+share/openmpi/mpicxx-wrapper-data.txt
+share/openmpi/mpif77-wrapper-data.txt
+share/openmpi/mpif90-wrapper-data.txt
diff --git a/parallel/openmpi/PLIST.vt b/parallel/openmpi/PLIST.vt
new file mode 100644
index 00000000000..cef36efb329
--- /dev/null
+++ b/parallel/openmpi/PLIST.vt
@@ -0,0 +1,76 @@
+@comment $NetBSD: PLIST.vt,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+bin/mpiCC-vt
+bin/mpic++-vt
+bin/mpicc-vt
+bin/mpicxx-vt
+bin/mpif77-vt
+bin/mpif90-vt
+bin/opari
+bin/otfaux
+bin/otfcompress
+bin/otfconfig
+bin/otfdecompress
+bin/otfdump
+bin/otfinfo
+bin/otfmerge
+bin/vtcc
+bin/vtcxx
+bin/vtf77
+bin/vtf90
+bin/vtfilter
+bin/vtunify
+include/vampirtrace/OTF_CopyHandler.h
+include/vampirtrace/OTF_Definitions.h
+include/vampirtrace/OTF_File.h
+include/vampirtrace/OTF_FileManager.h
+include/vampirtrace/OTF_Filenames.h
+include/vampirtrace/OTF_HandlerArray.h
+include/vampirtrace/OTF_MasterControl.h
+include/vampirtrace/OTF_RBuffer.h
+include/vampirtrace/OTF_RStream.h
+include/vampirtrace/OTF_Reader.h
+include/vampirtrace/OTF_WBuffer.h
+include/vampirtrace/OTF_WStream.h
+include/vampirtrace/OTF_Writer.h
+include/vampirtrace/OTF_inttypes.h
+include/vampirtrace/OTF_inttypes_unix.h
+include/vampirtrace/opari_omp.h
+include/vampirtrace/otf.h
+include/vampirtrace/pomp_lib.h
+include/vampirtrace/vt_user.h
+include/vampirtrace/vt_user.inc
+include/vampirtrace/vt_user_comment.h
+include/vampirtrace/vt_user_comment.inc
+include/vampirtrace/vt_user_count.h
+include/vampirtrace/vt_user_count.inc
+lib/libotf.la
+lib/libvt.a
+lib/libvt.fmpi.a
+lib/libvt.mpi.a
+share/openmpi/mpiCC-vt-wrapper-data.txt
+share/openmpi/mpic++-vt-wrapper-data.txt
+share/openmpi/mpicc-vt-wrapper-data.txt
+share/openmpi/mpicxx-vt-wrapper-data.txt
+share/openmpi/mpif77-vt-wrapper-data.txt
+share/openmpi/mpif90-vt-wrapper-data.txt
+share/vampirtrace/FILTER.SPEC
+share/vampirtrace/GROUPS.SPEC
+share/vampirtrace/METRICS.SPEC
+share/vampirtrace/doc/ChangeLog
+share/vampirtrace/doc/LICENSE
+share/vampirtrace/doc/UserManual.html
+share/vampirtrace/doc/UserManual.pdf
+share/vampirtrace/doc/opari/ChangeLog
+share/vampirtrace/doc/opari/LICENSE
+share/vampirtrace/doc/opari/Readme.html
+share/vampirtrace/doc/opari/lacsi01.pdf
+share/vampirtrace/doc/opari/lacsi01.ps.gz
+share/vampirtrace/doc/opari/opari-logo-100.gif
+share/vampirtrace/doc/otf/ChangeLog
+share/vampirtrace/doc/otf/LICENSE
+share/vampirtrace/doc/otf/otftools.pdf
+share/vampirtrace/doc/otf/specification.pdf
+share/vampirtrace/vtcc-wrapper-data.txt
+share/vampirtrace/vtcxx-wrapper-data.txt
+share/vampirtrace/vtf77-wrapper-data.txt
+share/vampirtrace/vtf90-wrapper-data.txt
diff --git a/parallel/openmpi/buildlink3.mk b/parallel/openmpi/buildlink3.mk
new file mode 100644
index 00000000000..0a23a2e8b51
--- /dev/null
+++ b/parallel/openmpi/buildlink3.mk
@@ -0,0 +1,12 @@
+# $NetBSD: buildlink3.mk,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+BUILDLINK_TREE+=	openmpi
+
+.if !defined(OPENMPI_BUILDLINK3_MK)
+OPENMPI_BUILDLINK3_MK:=
+
+BUILDLINK_API_DEPENDS.openmpi+=	openmpi>=1.2.6
+BUILDLINK_PKGSRCDIR.openmpi?=	../../parallel/openmpi
+.endif # OPENMPI_BUILDLINK3_MK
+
+BUILDLINK_TREE+=	-openmpi
diff --git a/parallel/openmpi/distinfo b/parallel/openmpi/distinfo
new file mode 100644
index 00000000000..c8b7b6dc68c
--- /dev/null
+++ b/parallel/openmpi/distinfo
@@ -0,0 +1,16 @@
+$NetBSD: distinfo,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+SHA1 (openmpi-1.4.tar.bz2) = 8e98ceae223f52f147d5151779ed1a43f2865a7f
+RMD160 (openmpi-1.4.tar.bz2) = 61f7665c69ea019d347b983062a1eee0ae807c9b
+Size (openmpi-1.4.tar.bz2) = 6699638 bytes
+SHA1 (patch-aa) = dfc2eb59ea592823d93a7ae3e223e703450201ad
+SHA1 (patch-ab) = c4be561af983b38803ba1f76a4ff5a6646072c3a
+SHA1 (patch-ac) = 2eb37bf842278c712561e30457d7e00889d12dcd
+SHA1 (patch-ad) = ee74acac5c7a7b022ee9a03957f8f3d71c2579fd
+SHA1 (patch-ae) = a4848899dcd0413caa1c99832477a4bd86b51112
+SHA1 (patch-af) = 812e623c39235098565762c098a40c1cb4f51f23
+SHA1 (patch-ag) = fc29742c423d2376893d4d5c3da7a0514f311262
+SHA1 (patch-ah) = bbc7422eeede4468590262ee84c54d8d0b911445
+SHA1 (patch-ai) = e341eefb09df978cf1d43c2176f5f8c6d09f703e
+SHA1 (patch-aj) = 4521e29de16a6cd5bf1a9ea7677b51cd0e6eb86c
+SHA1 (patch-ak) = d9a10360eec6dab95e08d4ac0a4d7da603ac4737
diff --git a/parallel/openmpi/options.mk b/parallel/openmpi/options.mk
new file mode 100644
index 00000000000..3b72308c166
--- /dev/null
+++ b/parallel/openmpi/options.mk
@@ -0,0 +1,21 @@
+# $NetBSD: options.mk,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+PKG_OPTIONS_VAR=	PKG_OPTIONS.openmpi
+PKG_SUPPORTED_OPTIONS=	debug openmpi-vampirtrace
+PKG_SUGGESTED_OPTIONS=	openmpi-vampirtrace
+
+.include "../../mk/bsd.options.mk"
+
+.if !empty(PKG_OPTIONS:Mdebug)
+CONFIGURE_ARGS+=	--enable-debug
+.endif
+
+# Allow coexistance of OpenMPI and libotf by disabling OpenMPI parts:
+.if !empty(PKG_OPTIONS:Mopenmpi-vampirtrace)
+CONFLICTS+=	libotf-[0-9]*
+PLIST_SRC+=	PLIST.vt
+.else
+CONFIGURE_ARGS+=	--enable-contrib-no-build=vt
+.endif
+
+PLIST_SRC+=	PLIST
diff --git a/parallel/openmpi/patches/patch-aa b/parallel/openmpi/patches/patch-aa
new file mode 100644
index 00000000000..10bcc72d104
--- /dev/null
+++ b/parallel/openmpi/patches/patch-aa
@@ -0,0 +1,23 @@
+$NetBSD: patch-aa,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Missing RPATH support.
+
+--- opal/tools/wrappers/opal_wrapper.c.orig	2008-08-25 23:16:48.000000000 +0400
++++ opal/tools/wrappers/opal_wrapper.c	2008-09-04 11:41:17.000000000 +0400
+@@ -57,6 +57,7 @@
+ #if !defined(__WINDOWS__)
+ #define OPAL_INCLUDE_FLAG  "-I"
+ #define OPAL_LIBDIR_FLAG   "-L"
++#define OPAL_RPATH_FLAG    "-R"
+ #else
+ #define OPAL_INCLUDE_FLAG  "/I"
+ #define OPAL_LIBDIR_FLAG   "/LIBPATH:"
+@@ -301,6 +302,8 @@
+ #else
+             asprintf(&line, OPAL_LIBDIR_FLAG"%s", 
+                      options_data[parse_options_idx].path_libdir);
++            asprintf(&line, OPAL_RPATH_FLAG"%s", 
++                     options_data[parse_options_idx].path_libdir);
+ #endif  /* defined(__WINDOWS__) */
+             opal_argv_append_nosize(&options_data[parse_options_idx].link_flags, line);
+             free(line);
diff --git a/parallel/openmpi/patches/patch-ab b/parallel/openmpi/patches/patch-ab
new file mode 100644
index 00000000000..9d59443edb7
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ab
@@ -0,0 +1,15 @@
+$NetBSD: patch-ab,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Force our libltdl.
+
+--- opal/Makefile.in.orig	2009-01-19 20:24:00.000000000 +0300
++++ opal/Makefile.in	2009-02-05 13:23:01.000000000 +0300
+@@ -568,7 +568,7 @@
+ LEXLIB = @LEXLIB@
+ LEX_OUTPUT_ROOT = @LEX_OUTPUT_ROOT@
+ LIBLTDL = @LIBLTDL@
+-LIBLTDL_SUBDIR = @LIBLTDL_SUBDIR@
++LIBLTDL_SUBDIR =
+ LIBOBJS = @LIBOBJS@
+ LIBS = @LIBS@
+ LIBTOOL = @LIBTOOL@
diff --git a/parallel/openmpi/patches/patch-ac b/parallel/openmpi/patches/patch-ac
new file mode 100644
index 00000000000..4e71ac06953
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ac
@@ -0,0 +1,28 @@
+$NetBSD: patch-ac,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Force our libltdl.
+
+--- configure.orig	2009-01-19 20:23:17.000000000 +0300
++++ configure	2009-02-06 01:59:45.000000000 +0300
+@@ -163871,9 +163871,10 @@
+   "") enable_ltdl_convenience=yes
+       ac_configure_args="$ac_configure_args --enable-ltdl-convenience" ;;
+ esac
+-LIBLTDL='${top_build_prefix}'"${lt_ltdl_dir+$lt_ltdl_dir/}libltdlc.la"
++#LIBLTDL='${top_build_prefix}'"${lt_ltdl_dir+$lt_ltdl_dir/}libltdlc.la"
++#LIBLTDL=libltdl.la
+ LTDLDEPS=$LIBLTDL
+-LTDLINCL='-I${top_srcdir}'"${lt_ltdl_dir+/$lt_ltdl_dir}"
++#LTDLINCL='-I${top_srcdir}'"${lt_ltdl_dir+/$lt_ltdl_dir}"
+ 
+ 
+ 
+@@ -180176,7 +180177,7 @@
+ cat confdefs.h >>conftest.$ac_ext
+ cat >>conftest.$ac_ext <<_ACEOF
+ /* end confdefs.h.  */
+-#include <opal/libltdl/ltdl.h>
++#include <ltdl.h>
+ 
+ _ACEOF
+ if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
diff --git a/parallel/openmpi/patches/patch-ad b/parallel/openmpi/patches/patch-ad
new file mode 100644
index 00000000000..068f949ded0
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ad
@@ -0,0 +1,18 @@
+$NetBSD: patch-ad,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Force our libltdl.
+
+--- opal/mca/base/mca_base_component_find.c.orig	2009-10-21 04:05:57.000000000 +0400
++++ opal/mca/base/mca_base_component_find.c	2009-10-27 11:46:51.000000000 +0300
+@@ -41,11 +41,7 @@
+ #endif
+ 
+ #if OMPI_WANT_LIBLTDL
+-  #ifndef __WINDOWS__ 
+-    #include "opal/libltdl/ltdl.h" 
+-  #else 
+     #include "ltdl.h" 
+-  #endif 
+ #endif
+ 
+ #include "opal/util/output.h"
diff --git a/parallel/openmpi/patches/patch-ae b/parallel/openmpi/patches/patch-ae
new file mode 100644
index 00000000000..4067c5e7da3
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ae
@@ -0,0 +1,18 @@
+$NetBSD: patch-ae,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Force our libltdl.
+
+--- opal/mca/base/mca_base_component_repository.c.orig	2009-10-21 04:05:57.000000000 +0400
++++ opal/mca/base/mca_base_component_repository.c	2009-10-27 11:47:50.000000000 +0300
+@@ -27,11 +27,7 @@
+ #include <stdio.h>
+ 
+ #if OMPI_WANT_LIBLTDL
+-  #ifndef __WINDOWS__ 
+-    #include "opal/libltdl/ltdl.h" 
+-  #else 
+     #include "ltdl.h" 
+-  #endif 
+ #endif
+ 
+ #include "opal/class/opal_list.h"
diff --git a/parallel/openmpi/patches/patch-af b/parallel/openmpi/patches/patch-af
new file mode 100644
index 00000000000..4085637c9de
--- /dev/null
+++ b/parallel/openmpi/patches/patch-af
@@ -0,0 +1,15 @@
+$NetBSD: patch-af,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Force our libltdl.
+
+--- test/support/components.h.orig	2008-11-04 23:56:21.000000000 +0300
++++ test/support/components.h	2009-02-15 04:08:24.000000000 +0300
+@@ -20,7 +20,7 @@
+ #ifndef OMPI_SUPPORT_COMPONENTS_H
+ #define OMPI_SUPPORT_COMPONENTS_H
+ 
+-#include "opal/libltdl/ltdl.h"
++#include "ltdl.h"
+ #include "opal/mca/mca.h"
+ 
+ #if defined(c_plusplus) || defined(__cplusplus)
diff --git a/parallel/openmpi/patches/patch-ag b/parallel/openmpi/patches/patch-ag
new file mode 100644
index 00000000000..dd39ea7a0d0
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ag
@@ -0,0 +1,15 @@
+$NetBSD: patch-ag,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Force our libltdl.
+
+--- test/support/components.c.orig	2008-11-04 23:56:21.000000000 +0300
++++ test/support/components.c	2009-02-15 04:08:30.000000000 +0300
+@@ -23,7 +23,7 @@
+ #include "ompi/constants.h"
+ #include "opal/constants.h"
+ #include "opal/mca/mca.h"
+-#include "opal/libltdl/ltdl.h"
++#include "ltdl.h"
+ 
+ #include "components.h"
+ 
diff --git a/parallel/openmpi/patches/patch-ah b/parallel/openmpi/patches/patch-ah
new file mode 100644
index 00000000000..ff603615f22
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ah
@@ -0,0 +1,174 @@
+$NetBSD: patch-ah,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Rewrite network interface configuration using getifaddrs(3) for BSD,
+this should fix OpenMPI for NetBSD. By Kevin M. Buckley.
+
+--- opal/util/if.c.orig	2009-12-08 23:36:09.000000000 +0300
++++ opal/util/if.c	2009-12-13 00:06:38.000000000 +0300
+@@ -38,6 +38,9 @@
+ #endif
+ #ifdef HAVE_NETINET_IN_H
+ #include <netinet/in.h>
++#if defined(__DragonFly__)
++#define IN_LINKLOCAL(i)        (((u_int32_t)(i) & 0xffff0000) == 0xa9fe0000)
++#endif
+ #endif
+ #ifdef HAVE_ARPA_INET_H
+ #include <arpa/inet.h>
+@@ -164,6 +167,145 @@
+                                 false, false, (int)false, &sd);
+     do_not_resolve = OPAL_INT_TO_BOOL(sd);
+ 
++#if defined(__NetBSD__) || defined(__FreeBSD__) || \
++    defined(__OpenBSD__) || defined(__DragonFly__)
++    /* configure using getifaddrs(3) */
++    {
++        OBJ_CONSTRUCT(&opal_if_list, opal_list_t);
++
++        struct ifaddrs **ifadd_list;
++        struct ifaddrs *cur_ifaddrs;
++        struct sockaddr_in* sin_addr;
++
++        /* 
++         * the manpage claims that getifaddrs() allocates the memory,
++         * and freeifaddrs() is later used to release the allocated memory.
++         * however, without this malloc the call to getifaddrs() segfaults
++         */
++        ifadd_list = (struct ifaddrs **) malloc(sizeof(struct ifaddrs*));
++
++        /* create the linked list of ifaddrs structs */
++        if(getifaddrs(ifadd_list) < 0) {
++            opal_output(0, "opal_ifinit: getifaddrs() failed with error=%d\n",
++                    errno);
++            return OPAL_ERROR;
++        }
++
++        for(cur_ifaddrs = *ifadd_list; NULL != cur_ifaddrs; 
++                cur_ifaddrs = cur_ifaddrs->ifa_next) {
++
++            opal_if_t intf;
++            opal_if_t *intf_ptr;
++            struct in_addr a4;
++
++#if 0
++	    printf("interface %s.\n", cur_ifaddrs->ifa_name);
++#endif
++            /* skip non- af_inet interface addresses */
++            if(AF_INET != cur_ifaddrs->ifa_addr->sa_family) {
++#if 0
++	      printf("skipping non- af_inet interface %s, family %d.\n",
++		     cur_ifaddrs->ifa_name, cur_ifaddrs->ifa_addr->sa_family);
++#endif
++		continue;
++	    }
++
++            /* skip interface if it is down (IFF_UP not set) */
++            if(0 == (cur_ifaddrs->ifa_flags & IFF_UP)) {
++#if 0
++                printf("skipping non-up interface %s.\n", cur_ifaddrs->ifa_name);
++#endif
++                continue;
++            }
++
++            /* skip interface if it is a loopback device (IFF_LOOPBACK set) */
++            /* or if it is a point-to-point interface */
++            /* TODO: do we really skip p2p? */
++            if(0 != (cur_ifaddrs->ifa_flags & IFF_LOOPBACK)
++                    || 0!= (cur_ifaddrs->ifa_flags & IFF_POINTOPOINT)) {
++#if 0
++                printf("skipping loopback interface %s.\n", cur_ifaddrs->ifa_name);
++#endif              
++                continue;
++            }
++
++#if 0
++	    printf("sa_len %d.\n", cur_ifaddrs->ifa_addr->sa_len);
++#endif
++            sin_addr = (struct sockaddr_in *) cur_ifaddrs->ifa_addr;
++
++	    /* Do we really need to skip link-local addresses? */
++#if 0
++            /* skip link local address: */
++            if(IN_LINKLOCAL (htonl(((struct sockaddr_in*)cur_ifaddrs->ifa_addr)->sin_addr.s_addr))) {
++#if 0
++                opal_output(0, "opal_ifinit: skipping link-local ip address on interface %s.\n",
++                        cur_ifaddrs->ifa_name);
++#endif
++                continue;
++            }
++#endif
++
++            memset(&intf, 0, sizeof(intf));
++            OBJ_CONSTRUCT(&intf, opal_list_item_t);
++#if 0 
++            char *addr_name = (char *) malloc(48*sizeof(char));
++            inet_ntop(AF_INET, &sin_addr->sin_addr, addr_name, 48*sizeof(char));
++            opal_output(0, "inet capable interface %s discovered, address %s.\n", 
++                    cur_ifaddrs->ifa_name, addr_name);
++            free(addr_name);
++#endif
++
++            /* fill values into the opal_if_t */
++            memcpy(&a4, &(sin_addr->sin_addr), sizeof(struct in_addr));
++            
++            strncpy(intf.if_name, cur_ifaddrs->ifa_name, IF_NAMESIZE);
++            intf.if_index = opal_list_get_size(&opal_if_list) + 1;
++            ((struct sockaddr_in*) &intf.if_addr)->sin_addr = a4;
++            ((struct sockaddr_in*) &intf.if_addr)->sin_family = AF_INET;
++            ((struct sockaddr_in*) &intf.if_addr)->sin_len =  cur_ifaddrs->ifa_addr->sa_len;
++
++            /* since every scope != 0 is ignored, we just set the scope to 0 */
++            /* There's no scope_id in the non-ipv6 stuff 
++	    ((struct sockaddr_in6*) &intf.if_addr)->sin6_scope_id = 0; 
++	    */
++
++            /*
++             * hardcoded netmask, adrian says that's ok
++             */
++	    /* Non-NetBSD uses intf.if_mask = prefix(((struct sockaddr_in*) &ifr->ifr_addr)->sin_addr.s_addr); */
++            /* intf.if_mask = 64; */
++	    intf.if_mask = prefix( sin_addr->sin_addr.s_addr);
++            intf.if_flags = cur_ifaddrs->ifa_flags;
++
++            /*
++             * FIXME: figure out how to gain access to the kernel index
++             * (or create our own), getifaddrs() does not contain such
++             * data
++             */
++
++            intf.if_kernel_index = (uint16_t) if_nametoindex(cur_ifaddrs->ifa_name);
++
++            intf_ptr = (opal_if_t*) calloc(1, sizeof(opal_if_t));
++            if(NULL == intf_ptr) {
++                opal_output(0, "opal_ifinit: unable to allocate %lu bytes\n",
++                            sizeof(opal_if_t));
++                OBJ_DESTRUCT(&intf);
++                return OPAL_ERR_OUT_OF_RESOURCE;
++            }
++            memcpy(intf_ptr, &intf, sizeof(intf));
++
++#if 0
++            printf("About to append interface %s.\n", cur_ifaddrs->ifa_name);
++#endif
++	    /* opal_list_append(&opal_if_list, &intf_ptr->super); */
++            opal_list_append(&opal_if_list, (opal_list_item_t*) intf_ptr);
++
++            OBJ_DESTRUCT(&intf);
++        }   /*  of for loop over ifaddrs list */
++
++    }
++#else
+     /* create the internet socket to test off */
+ /*
+    Change AF_INET to AF_UNSPEC (or AF_INET6) and everything will fail.
+@@ -356,6 +498,10 @@
+     }
+     free(ifconf.ifc_req);
+     close(sd);
++
++#endif /* anything other than {Net,Open,Free}BSD and DragonFly */
++
++
+ #if OPAL_WANT_IPV6
+ #ifdef __linux__ /* Linux does not have SIOCGL*, so parse
+                      /proc/net/if_inet6 instead */
diff --git a/parallel/openmpi/patches/patch-ai b/parallel/openmpi/patches/patch-ai
new file mode 100644
index 00000000000..b56ec992f00
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ai
@@ -0,0 +1,39 @@
+$NetBSD: patch-ai,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Install configuration files into example directory.
+
+--- orte/etc/Makefile.in.orig	2009-11-11 17:04:47.000000000 +0300
++++ orte/etc/Makefile.in	2009-12-04 05:00:13.000000000 +0300
+@@ -899,6 +899,7 @@
+ sharedstatedir = @sharedstatedir@
+ srcdir = @srcdir@
+ sysconfdir = @sysconfdir@
++exampledir = $(pkgdatadir)/examples
+ target_alias = @target_alias@
+ timer_aix_LIBS = @timer_aix_LIBS@
+ top_build_prefix = @top_build_prefix@
+@@ -1086,19 +1087,19 @@
+ # details why the mkdir is in install-data-local.
+ 
+ install-data-local:
+-	$(mkdir_p) $(DESTDIR)$(sysconfdir)
++	$(mkdir_p) $(DESTDIR)$(exampledir)
+ 	@ p="$(orte_config_files)"; \
+ 	for file in $$p; do \
+-	  if test -f $(DESTDIR)$(sysconfdir)/$$file; then \
++	  if test -f $(DESTDIR)$(exampledir)/$$file; then \
+ 	    echo "******************************* WARNING ************************************"; \
+ 	    echo "*** Not installing new $$file over existing file in:"; \
+-	    echo "***   $(DESTDIR)$(sysconfdir)/$$file"; \
++	    echo "***   $(DESTDIR)$(exampledir)/$$file"; \
+ 	    echo "******************************* WARNING ************************************"; \
+ 	  else \
+ 	    if test -f "$$file"; then d=; else d="$(srcdir)/"; fi; \
+ 	    f="`echo $$file | sed -e 's|^.*/||'`"; \
+-	    echo " $(INSTALL_DATA) $$d$$file $(DESTDIR)$(sysconfdir)/$$f"; \
+-	    $(INSTALL_DATA) $$d$$file $(DESTDIR)$(sysconfdir)/$$f; \
++	    echo " $(INSTALL_DATA) $$d$$file $(DESTDIR)$(exampledir)/$$f"; \
++	    $(INSTALL_DATA) $$d$$file $(DESTDIR)$(exampledir)/$$f; \
+ 	  fi; \
+ 	done
+ 
diff --git a/parallel/openmpi/patches/patch-aj b/parallel/openmpi/patches/patch-aj
new file mode 100644
index 00000000000..2898bbd4d90
--- /dev/null
+++ b/parallel/openmpi/patches/patch-aj
@@ -0,0 +1,46 @@
+$NetBSD: patch-aj,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Install configuration files into example directory.
+
+--- opal/etc/Makefile.in.orig	2009-11-11 17:04:16.000000000 +0300
++++ opal/etc/Makefile.in	2009-12-04 04:33:04.000000000 +0300
+@@ -36,6 +36,7 @@
+ pkgdatadir = $(datadir)/@PACKAGE@
+ pkglibdir = $(libdir)/@PACKAGE@
+ pkgincludedir = $(includedir)/@PACKAGE@
++exampledir = $(pkgdatadir)/examples
+ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+ install_sh_DATA = $(install_sh) -c -m 644
+ install_sh_PROGRAM = $(install_sh) -c
+@@ -1085,24 +1086,24 @@
+ # details why the mkdir is in install-data-local.
+ 
+ install-data-local:
+-	$(mkdir_p) $(DESTDIR)$(sysconfdir)
++	$(mkdir_p) $(DESTDIR)$(exampledir)
+ 	@ p="$(opal_config_files)"; \
+         if test "$(opal_file_from_platform)" = "yes"; then \
+ 	    if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+-	    echo " $(INSTALL_DATA) $$d$$p $(DESTDIR)$(sysconfdir)/openmpi-mca-params.conf"; \
+-	    $(INSTALL_DATA) $$d$$p $(DESTDIR)$(sysconfdir)/openmpi-mca-params.conf; \
++	    echo " $(INSTALL_DATA) $$d$$p $(DESTDIR)$(exampledir)/openmpi-mca-params.conf"; \
++	    $(INSTALL_DATA) $$d$$p $(DESTDIR)$(exampledir)/openmpi-mca-params.conf; \
+         else \
+             for file in $$p; do \
+-	        if test -f $(DESTDIR)$(sysconfdir)/openmpi-mca-params.conf; then \
++	        if test -f $(DESTDIR)$(exampledir)/openmpi-mca-params.conf; then \
+ 	            echo "******************************* WARNING ************************************"; \
+ 	            echo "*** Not installing new $$file over existing file in:"; \
+-	            echo "***   $(DESTDIR)$(sysconfdir)/$$file"; \
++	            echo "***   $(DESTDIR)$(exampledir)/$$file"; \
+ 	            echo "******************************* WARNING ************************************"; \
+ 	        else \
+ 	            if test -f "$$file"; then d=; else d="$(srcdir)/"; fi; \
+ 	            f="`echo $$file | sed -e 's|^.*/||'`"; \
+-	            echo " $(INSTALL_DATA) $$d$$file $(DESTDIR)$(sysconfdir)/$$f"; \
+-	            $(INSTALL_DATA) $$d$$file $(DESTDIR)$(sysconfdir)/$$f; \
++	            echo " $(INSTALL_DATA) $$d$$file $(DESTDIR)$(exampledir)/$$f"; \
++	            $(INSTALL_DATA) $$d$$file $(DESTDIR)$(exampledir)/$$f; \
+ 	        fi; \
+ 	    done \
+         fi;
diff --git a/parallel/openmpi/patches/patch-ak b/parallel/openmpi/patches/patch-ak
new file mode 100644
index 00000000000..2e39bb51c05
--- /dev/null
+++ b/parallel/openmpi/patches/patch-ak
@@ -0,0 +1,39 @@
+$NetBSD: patch-ak,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
+
+Install configuration files into example directory.
+
+--- ompi/etc/Makefile.in.orig	2009-12-04 04:54:39.000000000 +0300
++++ ompi/etc/Makefile.in	2009-12-04 05:02:08.000000000 +0300
+@@ -36,6 +36,7 @@
+ pkgdatadir = $(datadir)/@PACKAGE@
+ pkglibdir = $(libdir)/@PACKAGE@
+ pkgincludedir = $(includedir)/@PACKAGE@
++exampledir = $(pkgdatadir)/examples
+ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+ install_sh_DATA = $(install_sh) -c -m 644
+ install_sh_PROGRAM = $(install_sh) -c
+@@ -1086,19 +1087,19 @@
+ # details why the mkdir is in install-data-local.
+ 
+ install-data-local:
+-	$(mkdir_p) $(DESTDIR)$(sysconfdir)
++	$(mkdir_p) $(DESTDIR)$(exampledir)
+ 	@ p="$(ompi_config_files)"; \
+ 	for file in $$p; do \
+-	  if test -f $(DESTDIR)$(sysconfdir)/$$file; then \
++	  if test -f $(DESTDIR)$(exampledir)/$$file; then \
+ 	    echo "******************************* WARNING ************************************"; \
+ 	    echo "*** Not installing new $$file over existing file in:"; \
+-	    echo "***   $(DESTDIR)$(sysconfdir)/$$file"; \
++	    echo "***   $(DESTDIR)$(exampledir)/$$file"; \
+ 	    echo "******************************* WARNING ************************************"; \
+ 	  else \
+ 	    if test -f "$$file"; then d=; else d="$(srcdir)/"; fi; \
+ 	    f="`echo $$file | sed -e 's|^.*/||'`"; \
+-	    echo " $(INSTALL_DATA) $$d$$file $(DESTDIR)$(sysconfdir)/$$f"; \
+-	    $(INSTALL_DATA) $$d$$file $(DESTDIR)$(sysconfdir)/$$f; \
++	    echo " $(INSTALL_DATA) $$d$$file $(DESTDIR)$(exampledir)/$$f"; \
++	    $(INSTALL_DATA) $$d$$file $(DESTDIR)$(exampledir)/$$f; \
+ 	  fi; \
+ 	done
+
author	asau <asau@pkgsrc.org>	2009-12-12 23:30:01 +0000
committer	asau <asau@pkgsrc.org>	2009-12-12 23:30:01 +0000
commit	29f12907d031881859277f8cabbab0ab000ef3ac (patch)
tree	c94b5caac417ac95d4a9e497a92273e0cf82e4dd /parallel
parent	6e3ff94bf730cf69ca2c50249910bb726ebf4706 (diff)
download	pkgsrc-29f12907d031881859277f8cabbab0ab000ef3ac.tar.gz