Update to OpenMPI 1.4.3

New in 1.4.3
------------

- Fixed handling of the array_of_argv parameter in the Fortran
  binding of MPI_COMM_SPAWN_MULTIPLE.
- Fixed a problem with the Fortran binding for
  MPI_FILE_CREATE_ERRHANDLER.  Thanks to Secretan Yves for identifying
  the issue.
- Updates to the LSF PLM to ensure that the path is correctly passed.
  Thanks to Teng Lin for the patch.
- Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER
  bindings.  Thanks to Paul Kapinos for pointing out the issue.
- Fixed various MPI_THREAD_MULTIPLE race conditions.
- Fixed an issue with an undeclared variable from ptmalloc2 munmap on
  BSD systems.
- Fixes for BSD interface detection.
- Various other BSD fixes.  Thanks to Kevin Buckley helping to track.
  all of this down.
- Fixed issues with the use of the -nper* mpirun command line arguments.
- Fixed an issue with coll tuned dynamic rules.
- Fixed an issue with the use of OPAL_DESTDIR being applied too aggressively.
- Fixed an issue with one-sided xfers when the displacement exceeds 2GBytes.
- Change to ensure TotalView works properly on Darwin.
- Added support for Visual Studio 2010.
- Fix to ensure proper placement of VampirTrace header files.
- Needed to add volatile keyword to a varialbe used in debugging
  (MPIR_being_debugged).
- Fixed a bug in inter-allgather.
- Fixed malloc(0) warnings.
- Corrected a typo the MPI_Comm_size man page (intra -> inter).  Thanks
  to Simon number.cruncher for pointing this out.
- Fixed a SegV in orted when given more than 127 app_contexts.
- Removed xgrid source code from the 1.4 branch since it is no longer
  supported in the 1.4 series.
- Removed the --enable-opal-progress-threads config option since
  opal progress thread support does not work in 1.4.x.
- Fixed a defect in VampirTrace's vtfilter.
- Fixed wrong Windows path in hnp_contact.
- Removed the requirement for a paffinity component.
- Removed a hardcoded limit of 64 interconnected jobs.
- Fix to allow singletons to use ompi-server for rendezvous.
- Fixed bug in output-filename option.
- Fix to correctly handle failures in mx_init().
- Fixed a potential Fortran memory leak.
- Fixed an incorrect branch in some ppc32 assembly code.  Thanks
  to Matthew Clark for this fix.
- Remove use of undocumented AS_VAR_GET macro during configuration.
- Fixed an issue with VampirTrace's wrapper for MPI_init_thread.
- Updated mca-btl-openib-device-params.ini file with various new vendor id's.
- Configuration fixes to ensure CPPFLAGS in handled properly if a non-standard
  valgrind location was specified.
- Various man page updates

4 files changed, 9 insertions, 182 deletions

diff --git a/parallel/openmpi/Makefile b/parallel/openmpi/Makefile
index cbb8a2f5b55..25298e9455c 100644
--- a/parallel/openmpi/Makefile
+++ b/parallel/openmpi/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.6 2010/07/30 10:36:34 asau Exp $
+# $NetBSD: Makefile,v 1.7 2010/11/24 01:56:13 asau Exp $
 
-DISTNAME=	openmpi-1.4.2
+DISTNAME=	openmpi-1.4.3
 CATEGORIES=	parallel
 MASTER_SITES=	http://www.open-mpi.org/software/ompi/v1.4/downloads/
 EXTRACT_SUFX=	.tar.bz2
diff --git a/parallel/openmpi/PLIST b/parallel/openmpi/PLIST
index 7c3c4ebce82..7c3894a259c 100644
--- a/parallel/openmpi/PLIST
+++ b/parallel/openmpi/PLIST
@@ -1,4 +1,4 @@
-@comment $NetBSD: PLIST,v 1.3 2010/05/14 20:12:58 asau Exp $
+@comment $NetBSD: PLIST,v 1.4 2010/11/24 01:56:13 asau Exp $
 bin/mpiCC
 bin/mpic++
 bin/mpicc
@@ -479,6 +479,7 @@ share/openmpi/help-mca-coll-base.txt
 share/openmpi/help-mca-param.txt
 share/openmpi/help-mpi-api.txt
 share/openmpi/help-mpi-btl-base.txt
+share/openmpi/help-mpi-btl-tcp.txt
 share/openmpi/help-mpi-common-sm.txt
 share/openmpi/help-mpi-errors.txt
 share/openmpi/help-mpi-runtime.txt
diff --git a/parallel/openmpi/distinfo b/parallel/openmpi/distinfo
index ff238b9fb5a..306ffced1aa 100644
--- a/parallel/openmpi/distinfo
+++ b/parallel/openmpi/distinfo
@@ -1,8 +1,8 @@
-$NetBSD: distinfo,v 1.3 2010/05/14 20:12:58 asau Exp $
+$NetBSD: distinfo,v 1.4 2010/11/24 01:56:13 asau Exp $
 
-SHA1 (openmpi-1.4.2.tar.bz2) = 3e85092433d0e399cc7a51c018f9d13562f78b80
-RMD160 (openmpi-1.4.2.tar.bz2) = 2c9fbcc8f77e7fa28e2bd062875d484548cc0b79
-Size (openmpi-1.4.2.tar.bz2) = 6630550 bytes
+SHA1 (openmpi-1.4.3.tar.bz2) = 9d24b6969d73605904855eb32d40d6b07e231932
+RMD160 (openmpi-1.4.3.tar.bz2) = 087532de57244c03941421162caa9e5537b4eba1
+Size (openmpi-1.4.3.tar.bz2) = 6626909 bytes
 SHA1 (patch-aa) = dfc2eb59ea592823d93a7ae3e223e703450201ad
 SHA1 (patch-ab) = c4be561af983b38803ba1f76a4ff5a6646072c3a
 SHA1 (patch-ac) = 2eb37bf842278c712561e30457d7e00889d12dcd
@@ -10,7 +10,7 @@ SHA1 (patch-ad) = ee74acac5c7a7b022ee9a03957f8f3d71c2579fd
 SHA1 (patch-ae) = a4848899dcd0413caa1c99832477a4bd86b51112
 SHA1 (patch-af) = 812e623c39235098565762c098a40c1cb4f51f23
 SHA1 (patch-ag) = fc29742c423d2376893d4d5c3da7a0514f311262
-SHA1 (patch-ah) = bbc7422eeede4468590262ee84c54d8d0b911445
+SHA1 (patch-ah) = da39a3ee5e6b4b0d3255bfef95601890afd80709
 SHA1 (patch-ai) = e341eefb09df978cf1d43c2176f5f8c6d09f703e
 SHA1 (patch-aj) = 4521e29de16a6cd5bf1a9ea7677b51cd0e6eb86c
 SHA1 (patch-ak) = d9a10360eec6dab95e08d4ac0a4d7da603ac4737
diff --git a/parallel/openmpi/patches/patch-ah b/parallel/openmpi/patches/patch-ah
index ff603615f22..e69de29bb2d 100644
--- a/parallel/openmpi/patches/patch-ah
+++ b/parallel/openmpi/patches/patch-ah
@@ -1,174 +0,0 @@
-$NetBSD: patch-ah,v 1.1.1.1 2009/12/12 23:30:01 asau Exp $
-
-Rewrite network interface configuration using getifaddrs(3) for BSD,
-this should fix OpenMPI for NetBSD. By Kevin M. Buckley.
-
---- opal/util/if.c.orig	2009-12-08 23:36:09.000000000 +0300
-+++ opal/util/if.c	2009-12-13 00:06:38.000000000 +0300
-@@ -38,6 +38,9 @@
- #endif
- #ifdef HAVE_NETINET_IN_H
- #include <netinet/in.h>
-+#if defined(__DragonFly__)
-+#define IN_LINKLOCAL(i)        (((u_int32_t)(i) & 0xffff0000) == 0xa9fe0000)
-+#endif
- #endif
- #ifdef HAVE_ARPA_INET_H
- #include <arpa/inet.h>
-@@ -164,6 +167,145 @@
-                                 false, false, (int)false, &sd);
-     do_not_resolve = OPAL_INT_TO_BOOL(sd);
- 
-+#if defined(__NetBSD__) || defined(__FreeBSD__) || \
-+    defined(__OpenBSD__) || defined(__DragonFly__)
-+    /* configure using getifaddrs(3) */
-+    {
-+        OBJ_CONSTRUCT(&opal_if_list, opal_list_t);
-+
-+        struct ifaddrs **ifadd_list;
-+        struct ifaddrs *cur_ifaddrs;
-+        struct sockaddr_in* sin_addr;
-+
-+        /* 
-+         * the manpage claims that getifaddrs() allocates the memory,
-+         * and freeifaddrs() is later used to release the allocated memory.
-+         * however, without this malloc the call to getifaddrs() segfaults
-+         */
-+        ifadd_list = (struct ifaddrs **) malloc(sizeof(struct ifaddrs*));
-+
-+        /* create the linked list of ifaddrs structs */
-+        if(getifaddrs(ifadd_list) < 0) {
-+            opal_output(0, "opal_ifinit: getifaddrs() failed with error=%d\n",
-+                    errno);
-+            return OPAL_ERROR;
-+        }
-+
-+        for(cur_ifaddrs = *ifadd_list; NULL != cur_ifaddrs; 
-+                cur_ifaddrs = cur_ifaddrs->ifa_next) {
-+
-+            opal_if_t intf;
-+            opal_if_t *intf_ptr;
-+            struct in_addr a4;
-+
-+#if 0
-+	    printf("interface %s.\n", cur_ifaddrs->ifa_name);
-+#endif
-+            /* skip non- af_inet interface addresses */
-+            if(AF_INET != cur_ifaddrs->ifa_addr->sa_family) {
-+#if 0
-+	      printf("skipping non- af_inet interface %s, family %d.\n",
-+		     cur_ifaddrs->ifa_name, cur_ifaddrs->ifa_addr->sa_family);
-+#endif
-+		continue;
-+	    }
-+
-+            /* skip interface if it is down (IFF_UP not set) */
-+            if(0 == (cur_ifaddrs->ifa_flags & IFF_UP)) {
-+#if 0
-+                printf("skipping non-up interface %s.\n", cur_ifaddrs->ifa_name);
-+#endif
-+                continue;
-+            }
-+
-+            /* skip interface if it is a loopback device (IFF_LOOPBACK set) */
-+            /* or if it is a point-to-point interface */
-+            /* TODO: do we really skip p2p? */
-+            if(0 != (cur_ifaddrs->ifa_flags & IFF_LOOPBACK)
-+                    || 0!= (cur_ifaddrs->ifa_flags & IFF_POINTOPOINT)) {
-+#if 0
-+                printf("skipping loopback interface %s.\n", cur_ifaddrs->ifa_name);
-+#endif              
-+                continue;
-+            }
-+
-+#if 0
-+	    printf("sa_len %d.\n", cur_ifaddrs->ifa_addr->sa_len);
-+#endif
-+            sin_addr = (struct sockaddr_in *) cur_ifaddrs->ifa_addr;
-+
-+	    /* Do we really need to skip link-local addresses? */
-+#if 0
-+            /* skip link local address: */
-+            if(IN_LINKLOCAL (htonl(((struct sockaddr_in*)cur_ifaddrs->ifa_addr)->sin_addr.s_addr))) {
-+#if 0
-+                opal_output(0, "opal_ifinit: skipping link-local ip address on interface %s.\n",
-+                        cur_ifaddrs->ifa_name);
-+#endif
-+                continue;
-+            }
-+#endif
-+
-+            memset(&intf, 0, sizeof(intf));
-+            OBJ_CONSTRUCT(&intf, opal_list_item_t);
-+#if 0 
-+            char *addr_name = (char *) malloc(48*sizeof(char));
-+            inet_ntop(AF_INET, &sin_addr->sin_addr, addr_name, 48*sizeof(char));
-+            opal_output(0, "inet capable interface %s discovered, address %s.\n", 
-+                    cur_ifaddrs->ifa_name, addr_name);
-+            free(addr_name);
-+#endif
-+
-+            /* fill values into the opal_if_t */
-+            memcpy(&a4, &(sin_addr->sin_addr), sizeof(struct in_addr));
-+            
-+            strncpy(intf.if_name, cur_ifaddrs->ifa_name, IF_NAMESIZE);
-+            intf.if_index = opal_list_get_size(&opal_if_list) + 1;
-+            ((struct sockaddr_in*) &intf.if_addr)->sin_addr = a4;
-+            ((struct sockaddr_in*) &intf.if_addr)->sin_family = AF_INET;
-+            ((struct sockaddr_in*) &intf.if_addr)->sin_len =  cur_ifaddrs->ifa_addr->sa_len;
-+
-+            /* since every scope != 0 is ignored, we just set the scope to 0 */
-+            /* There's no scope_id in the non-ipv6 stuff 
-+	    ((struct sockaddr_in6*) &intf.if_addr)->sin6_scope_id = 0; 
-+	    */
-+
-+            /*
-+             * hardcoded netmask, adrian says that's ok
-+             */
-+	    /* Non-NetBSD uses intf.if_mask = prefix(((struct sockaddr_in*) &ifr->ifr_addr)->sin_addr.s_addr); */
-+            /* intf.if_mask = 64; */
-+	    intf.if_mask = prefix( sin_addr->sin_addr.s_addr);
-+            intf.if_flags = cur_ifaddrs->ifa_flags;
-+
-+            /*
-+             * FIXME: figure out how to gain access to the kernel index
-+             * (or create our own), getifaddrs() does not contain such
-+             * data
-+             */
-+
-+            intf.if_kernel_index = (uint16_t) if_nametoindex(cur_ifaddrs->ifa_name);
-+
-+            intf_ptr = (opal_if_t*) calloc(1, sizeof(opal_if_t));
-+            if(NULL == intf_ptr) {
-+                opal_output(0, "opal_ifinit: unable to allocate %lu bytes\n",
-+                            sizeof(opal_if_t));
-+                OBJ_DESTRUCT(&intf);
-+                return OPAL_ERR_OUT_OF_RESOURCE;
-+            }
-+            memcpy(intf_ptr, &intf, sizeof(intf));
-+
-+#if 0
-+            printf("About to append interface %s.\n", cur_ifaddrs->ifa_name);
-+#endif
-+	    /* opal_list_append(&opal_if_list, &intf_ptr->super); */
-+            opal_list_append(&opal_if_list, (opal_list_item_t*) intf_ptr);
-+
-+            OBJ_DESTRUCT(&intf);
-+        }   /*  of for loop over ifaddrs list */
-+
-+    }
-+#else
-     /* create the internet socket to test off */
- /*
-    Change AF_INET to AF_UNSPEC (or AF_INET6) and everything will fail.
-@@ -356,6 +498,10 @@
-     }
-     free(ifconf.ifc_req);
-     close(sd);
-+
-+#endif /* anything other than {Net,Open,Free}BSD and DragonFly */
-+
-+
- #if OPAL_WANT_IPV6
- #ifdef __linux__ /* Linux does not have SIOCGL*, so parse
-                      /proc/net/if_inet6 instead */