diff options
Diffstat (limited to 'biology/bioperl/Makefile')
| -rw-r--r-- | biology/bioperl/Makefile | 79 |
1 files changed, 55 insertions, 24 deletions
diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile index 04ea1a136aa..882e27bf254 100644 --- a/biology/bioperl/Makefile +++ b/biology/bioperl/Makefile @@ -1,33 +1,64 @@ -# $NetBSD: Makefile,v 1.24 2013/05/31 12:39:38 wiz Exp $ -# - -DISTNAME= bioperl-0.7.0 -PKGREVISION= 7 -CATEGORIES= biology -MASTER_SITES= http://bioperl.org/DIST/old_releases/ - -MAINTAINER= pkgsrc-users@NetBSD.org -HOMEPAGE= http://bioperl.org/ -COMMENT= Perl tools for computational molecular biology - -USE_TOOLS+= pax - -REPLACE_PERL+= Bio/LiveSeq/Chain.pm -REPLACE_PERL+= Bio/SeqIO/game/featureHandler.pm -REPLACE_PERL+= Bio/Tools/Blast/Run/postclient.pl -REPLACE_PERL+= examples/gsequence -REPLACE_PERL+= examples/*.pl -REPLACE_PERL+= examples/blast/*.pl -REPLACE_PERL+= examples/root_object/*.pl -REPLACE_PERL+= examples/root_object/vector/vector.pl -REPLACE_PERL+= examples/seq/*.pl +# $NetBSD: Makefile,v 1.25 2014/02/20 14:44:16 fhajny Exp $ +DISTNAME= BioPerl-1.6.923 +PKGNAME= ${DISTNAME:tl} +CATEGORIES= biology perl5 +MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/} + +MAINTAINER= filip@joyent.com +HOMEPAGE= http://www.bioperl.org/ +COMMENT= Perl tools for computational molecular biology +LICENSE= ${PERL5_LICENSE} + +BUILD_DEPENDS+= p5-Module-Build>0.42:../../devel/p5-Module-Build +BUILD_DEPENDS+= p5-Test-Most-[0-9]*:../../devel/p5-Test-Most + +DEPENDS+= p5-Algorithm-Munkres-[0-9]*:../../math/p5-Algorithm-Munkres +DEPENDS+= p5-Array-Compare-[0-9]*:../../devel/p5-Array-Compare +DEPENDS+= p5-Bio-ASN1-EntrezGene-[0-9]*:../../biology/p5-Bio-ASN1-EntrezGene +DEPENDS+= p5-Clone-[0-9]*:../../devel/p5-Clone +DEPENDS+= p5-Convert-Binary-C-[0-9]*:../../devel/p5-Convert-Binary-C +DEPENDS+= p5-DB_File-[0-9]*:../../databases/p5-DB_File +DEPENDS+= p5-Data-Stag>=0.11:../../devel/p5-Data-Stag +DEPENDS+= p5-Error-[0-9]*:../../devel/p5-Error +DEPENDS+= p5-ExtUtils-Manifest>=1.52:../../devel/p5-ExtUtils-Manifest +DEPENDS+= p5-GD-[0-9]*:../../graphics/p5-GD +DEPENDS+= p5-Graph>=0.50:../../devel/p5-Graph +DEPENDS+= p5-GraphViz-[0-9]*:../../graphics/p5-GraphViz +DEPENDS+= p5-HTML-Parser>=3:../../www/p5-HTML-Parser +DEPENDS+= p5-HTML-TableExtract-[0-9]*:../../www/p5-HTML-TableExtract +DEPENDS+= p5-IO-String-[0-9]*:../../devel/p5-IO-String +DEPENDS+= p5-List-MoreUtils-[0-9]*:../../devel/p5-List-MoreUtils +DEPENDS+= p5-PostScript-[0-9]*:../../print/p5-PostScript +DEPENDS+= p5-SOAP-Lite-[0-9]*:../../net/p5-SOAP-Lite +DEPENDS+= p5-SVG-Graph>=0.01:../../graphics/p5-SVG-Graph +DEPENDS+= p5-SVG>=2.26:../../graphics/p5-SVG +DEPENDS+= p5-Set-Scalar-[0-9]*:../../devel/p5-Set-Scalar +DEPENDS+= p5-Sort-Naturally-[0-9]*:../../devel/p5-Sort-Naturally +DEPENDS+= p5-Spreadsheet-ParseExcel-[0-9]*:../../math/p5-Spreadsheet-ParseExcel +DEPENDS+= p5-Storable>=2.05:../../devel/p5-Storable +DEPENDS+= p5-XML-Parser-[0-9]*:../../textproc/p5-XML-Parser +DEPENDS+= p5-XML-SAX-Writer-[0-9]*:../../textproc/p5-XML-SAX-Writer +DEPENDS+= p5-XML-SAX>=0.15:../../textproc/p5-XML-SAX +DEPENDS+= p5-XML-Simple-[0-9]*:../../textproc/p5-XML-Simple +DEPENDS+= p5-XML-Twig-[0-9]*:../../textproc/p5-XML-Twig +DEPENDS+= p5-XML-Writer>=0.4:../../textproc/p5-XML-Writer +DEPENDS+= p5-YAML-[0-9]*:../../textproc/p5-YAML +DEPENDS+= p5-libwww-[0-9]*:../../www/p5-libwww +DEPENDS+= p5-libxml-[0-9]*:../../textproc/p5-libxml + +USE_TOOLS+= pax + +REPLACE_PERL+= scripts/*/*.pl + +PERL5_MODULE_TYPE= Module::Build PERL5_PACKLIST= auto/Bio/.packlist INSTALLATION_DIRS= share/examples/bioperl post-install: - cd ${WRKSRC}/examples && pax -rw . ${DESTDIR}${PREFIX}/share/examples/bioperl + cd ${WRKSRC}/examples && ${PAX} -rw . ${DESTDIR}${PREFIX}/share/examples/bioperl +.include "options.mk" .include "../../lang/perl5/module.mk" .include "../../mk/bsd.pkg.mk" |