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Diffstat (limited to 'biology/pdbalign/DESCR')
| -rw-r--r-- | biology/pdbalign/DESCR | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/biology/pdbalign/DESCR b/biology/pdbalign/DESCR new file mode 100644 index 00000000000..54c1751e372 --- /dev/null +++ b/biology/pdbalign/DESCR @@ -0,0 +1,11 @@ +Given a GCG multiple sequence alignment file (a GCG MSF file), which a +includes a sequence of known structure, the program pdbalign maps the +sequence variability onto the known structure. The central premise is +of course, that for a closely related family of proteins (sequence ID +> 40%) the 3-D structures will not be significantly different.pdbdist +calculates the distance from each atom in the pdb file to each atom in +the ligand and records the minimum in the temperature field for that +atom record.distalign reads the output from pdbdist and also the +original GCG MSF file and produces an MSF file annotated with a +measure of sequence variability and the distance of the residue at +that position (of the sequence of known structure) from the ligand. |