1 files changed, 76 insertions, 0 deletions
diff --git a/biology/xylem/patches/patch-ab b/biology/xylem/patches/patch-ab
new file mode 100644
index 00000000000..274bffe0159
--- /dev/null
+++ b/biology/xylem/patches/patch-ab
@@ -0,0 +1,76 @@
+$NetBSD: patch-ab,v 1.1.1.1 2003/10/04 19:13:33 jschauma Exp $
+
+--- Makefile.orig	2000-08-17 12:17:18.000000000 -0400
++++ Makefile	2003-09-28 17:05:26.000000000 -0400
+@@ -6,9 +6,9 @@
+ LDLIB = .
+ LIBOBJS = p2clib.o
+ #CC= gcc
+-CC= cc
+-CFLAGS= -O  -L$(LDLIB) -lp2c -lm -I$(INCLIB)
+-LFLAGS=  -c
++#CC= cc
++MYCFLAGS= -O  -L$(LDLIB) -lp2c -lm -I$(INCLIB)
++LFLAGS+=  -c
+ 
+ PROGS= dbstat getloc getob identify prot2nuc reform ribosome splitdb shuffle flat2phyl phyl2flat
+ 
+@@ -22,45 +22,45 @@
+ 
+ # Making the p2c runtime library
+ libp2c.a: $(LIBOBJS)
+-	ar r libp2c.a $(LIBOBJS); ranlib libp2c.a
++	${AR} r libp2c.a $(LIBOBJS); ranlib libp2c.a
+ 
+ p2clib.o: p2clib.c
+-	$(CC) $(LFLAGS)  p2clib.c
++	$(CC) $(LFLAGS)  ${CFLAGS} p2clib.c
+ 
+ #libp2c.a: libp2c.a
+ #	ranlib libp2c.a
+ 
+ # Making the programs
+ dbstat :   
+-	$(CC) dbstat.c $(CFLAGS)  -o dbstat
++	$(CC) dbstat.c $(MYCFLAGS) ${CFLAGS} -o dbstat
+ 
+ flat2phyl :   
+-	$(CC) flat2phyl.c $(CFLAGS)  -o flat2phyl
++	$(CC) flat2phyl.c $(MYCFLAGS) ${CFLAGS} -o flat2phyl
+ 
+ phyl2flat :   
+-	$(CC) phyl2flat.c $(CFLAGS)  -o phyl2flat
++	$(CC) phyl2flat.c $(MYCFLAGS) ${CFLAGS} -o phyl2flat
+ 
+ getloc :   
+-	$(CC) getloc.c $(CFLAGS) -o getloc
++	$(CC) getloc.c $(MYCFLAGS) ${CFLAGS} -o getloc
+ 
+ getob :   
+-	$(CC) getob.c $(CFLAGS)  -o getob
++	$(CC) getob.c $(MYCFLAGS) ${CFLAGS} -o getob
+ 
+ identify :   
+-	$(CC) identify.c $(CFLAGS) -o identify 
++	$(CC) identify.c $(MYCFLAGS) ${CFLAGS} -o identify 
+ 
+ prot2nuc :   
+-	$(CC) prot2nuc.c $(CFLAGS) -o prot2nuc 
++	$(CC) prot2nuc.c $(MYCFLAGS) ${CFLAGS} -o prot2nuc 
+ 
+ reform :   
+-	$(CC) reform.c $(CFLAGS) -o reform 
++	$(CC) reform.c $(MYCFLAGS) ${CFLAGS} -o reform 
+ 
+ ribosome :   
+-	$(CC) ribosome.c $(CFLAGS) -o ribosome 
++	$(CC) ribosome.c $(MYCFLAGS) ${CFLAGS} -o ribosome 
+ 
+ shuffle :   
+-	$(CC) shuffle.c $(CFLAGS) -o shuffle 
++	$(CC) shuffle.c $(MYCFLAGS) ${CFLAGS} -o shuffle 
+ 
+ splitdb :   
+-	$(CC) splitdb.c $(CFLAGS) -o splitdb 
++	$(CC) splitdb.c $(MYCFLAGS) ${CFLAGS} -o splitdb 
+