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-rw-r--r--biology/bioperl/Makefile30
-rw-r--r--biology/bioperl/pkg/PLIST68
2 files changed, 17 insertions, 81 deletions
diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile
index 1e40805a8c5..eab61448f0b 100644
--- a/biology/bioperl/Makefile
+++ b/biology/bioperl/Makefile
@@ -1,29 +1,31 @@
-# $NetBSD: Makefile,v 1.1.1.1 1999/04/16 14:43:35 rh Exp $
+# $NetBSD: Makefile,v 1.2 2000/08/27 07:10:59 jlam Exp $
#
-DISTNAME= bioperl-0.04.4
-CATEGORIES= biology
-MASTER_SITES= ftp://bio.perl.org/pub/DIST/
+DISTNAME= bioperl-0.04.4
+CATEGORIES= biology
+MASTER_SITES= ftp://bio.perl.org/pub/DIST/
-MAINTAINER= packages@netbsd.org
-HOMEPAGE= http://bio.perl.org/
+MAINTAINER= packages@netbsd.org
+HOMEPAGE= http://bio.perl.org/
-USE_PERL5= yes
+USE_PERL5= # defined
+PERL5_PACKLIST= ${PERL5_SITEARCH}/auto/Bio/.packlist
+PERL5_PACKLIST+= ${PERL5_SITEARCH}/auto/bp_sw/.packlist
do-configure:
- cd ${WRKSRC}; perl Makefile.PL
- cd ${WRKSRC}/Compile/SW; perl Makefile.PL
+ cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PERL5} Makefile.PL
+ cd ${WRKSRC}/Compile/SW; ${SETENV} ${MAKE_ENV} ${PERL5} Makefile.PL
pre-build:
- cd ${WRKSRC}/Compile/SW/libs; make
+ cd ${WRKSRC}/Compile/SW/libs; ${MAKE_PROGRAM}
post-build:
- cd ${WRKSRC}/Compile/SW; make
- cd ${WRKSRC}; make test
- cd ${WRKSRC}/Compile/SW; make test
+ cd ${WRKSRC}/Compile/SW; ${MAKE_PROGRAM}
+ cd ${WRKSRC}; ${MAKE_PROGRAM} test
+ cd ${WRKSRC}/Compile/SW; ${MAKE_PROGRAM} test
post-install:
- cd ${WRKSRC}/Compile/SW; make install
+ cd ${WRKSRC}/Compile/SW; ${MAKE_PROGRAM} install
${INSTALL_DATA_DIR} ${PREFIX}/share/examples/bioperl
cd ${WRKSRC}/examples; ${GTAR} cf - . \
| (cd ${PREFIX}/share/examples/bioperl; ${GTAR} xf -)
diff --git a/biology/bioperl/pkg/PLIST b/biology/bioperl/pkg/PLIST
index c9fe1f000db..4e429081653 100644
--- a/biology/bioperl/pkg/PLIST
+++ b/biology/bioperl/pkg/PLIST
@@ -1,62 +1,4 @@
-@comment $NetBSD: PLIST,v 1.1.1.1 1999/04/16 14:43:36 rh Exp $
-lib/perl5/man/man3/Bio::Parse.3
-lib/perl5/man/man3/Bio::Root::Err.3
-lib/perl5/man/man3/Bio::Root::IOManager.3
-lib/perl5/man/man3/Bio::Root::Object.3
-lib/perl5/man/man3/Bio::Root::Utilities.3
-lib/perl5/man/man3/Bio::Root::Vector.3
-lib/perl5/man/man3/Bio::Root::Xref.3
-lib/perl5/man/man3/Bio::Seq.3
-lib/perl5/man/man3/Bio::SimpleAlign.3
-lib/perl5/man/man3/Bio::Tools::AlignFactory.3
-lib/perl5/man/man3/Bio::Tools::Blast.3
-lib/perl5/man/man3/Bio::Tools::Blast::HSP.3
-lib/perl5/man/man3/Bio::Tools::Blast::HTML.3
-lib/perl5/man/man3/Bio::Tools::Blast::Run::LocalBlast.3
-lib/perl5/man/man3/Bio::Tools::Blast::Run::Webblast.3
-lib/perl5/man/man3/Bio::Tools::Blast::Sbjct.3
-lib/perl5/man/man3/Bio::Tools::Fasta.3
-lib/perl5/man/man3/Bio::Tools::RestrictionEnzyme.3
-lib/perl5/man/man3/Bio::Tools::SeqAnal.3
-lib/perl5/man/man3/Bio::Tools::SeqPattern.3
-lib/perl5/man/man3/Bio::Tools::WWW.3
-lib/perl5/man/man3/Bio::Tools::pSW.3
-lib/perl5/man/man3/Bio::UnivAln.3
-lib/perl5/man/man3/bioperl.3
-lib/perl5/site_perl/Bio/Parse.pm
-lib/perl5/site_perl/Bio/Root/Err.pm
-lib/perl5/site_perl/Bio/Root/Global.pm
-lib/perl5/site_perl/Bio/Root/IOManager.pm
-lib/perl5/site_perl/Bio/Root/Object.pm
-lib/perl5/site_perl/Bio/Root/Utilities.pm
-lib/perl5/site_perl/Bio/Root/Vector.pm
-lib/perl5/site_perl/Bio/Root/Xref.pm
-lib/perl5/site_perl/Bio/Seq.pm
-lib/perl5/site_perl/Bio/SimpleAlign.pm
-lib/perl5/site_perl/Bio/Tools/AlignFactory.pm
-lib/perl5/site_perl/Bio/Tools/Blast.pm
-lib/perl5/site_perl/Bio/Tools/Blast/CHANGES
-lib/perl5/site_perl/Bio/Tools/Blast/HSP.pm
-lib/perl5/site_perl/Bio/Tools/Blast/HTML.pm
-lib/perl5/site_perl/Bio/Tools/Blast/Run/LocalBlast.pm
-lib/perl5/site_perl/Bio/Tools/Blast/Run/Makefile.PL
-lib/perl5/site_perl/Bio/Tools/Blast/Run/Webblast.pm
-lib/perl5/site_perl/Bio/Tools/Blast/Run/postclient.pl
-lib/perl5/site_perl/Bio/Tools/Blast/Sbjct.pm
-lib/perl5/site_perl/Bio/Tools/Fasta.pm
-lib/perl5/site_perl/Bio/Tools/RestrictionEnzyme.pm
-lib/perl5/site_perl/Bio/Tools/SeqAnal.pm
-lib/perl5/site_perl/Bio/Tools/SeqPattern.pm
-lib/perl5/site_perl/Bio/Tools/WWW.pm
-lib/perl5/site_perl/Bio/Tools/pSW.pm
-lib/perl5/site_perl/Bio/UnivAln.pm
-lib/perl5/site_perl/auto/bp_sw/autosplit.ix
-lib/perl5/site_perl/bioperl.pod
-lib/perl5/site_perl/bp_sw.pm
-lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/Bio/.packlist
-lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw/.packlist
-lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw/bp_sw.bs
-lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw/bp_sw.so
+@comment $NetBSD: PLIST,v 1.2 2000/08/27 07:10:59 jlam Exp $
share/examples/bioperl/blast/blast_config.pl
share/examples/bioperl/blast/blast_seq.pl
share/examples/bioperl/blast/example.table1
@@ -131,11 +73,3 @@ share/examples/bioperl/simplealign.pl
@dirrm share/examples/bioperl/blast/out
@dirrm share/examples/bioperl/blast
@dirrm share/examples/bioperl
-@dirrm lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw
-@dirrm lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/Bio
-@dirrm lib/perl5/site_perl/auto/bp_sw
-@dirrm lib/perl5/site_perl/Bio/Tools/Blast/Run
-@dirrm lib/perl5/site_perl/Bio/Tools/Blast
-@dirrm lib/perl5/site_perl/Bio/Tools
-@dirrm lib/perl5/site_perl/Bio/Root
-@dirrm lib/perl5/site_perl/Bio