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-rw-r--r--biology/biolibc-tools/Makefile10
-rw-r--r--biology/biolibc-tools/PLIST28
-rw-r--r--biology/biolibc-tools/distinfo8
3 files changed, 31 insertions, 15 deletions
diff --git a/biology/biolibc-tools/Makefile b/biology/biolibc-tools/Makefile
index 9ccd93c04e8..7bbaff06b4f 100644
--- a/biology/biolibc-tools/Makefile
+++ b/biology/biolibc-tools/Makefile
@@ -1,9 +1,8 @@
-# $NetBSD: Makefile,v 1.1 2021/08/31 15:55:16 bacon Exp $
+# $NetBSD: Makefile,v 1.2 2021/12/14 19:05:39 bacon Exp $
-DISTNAME= biolibc-tools-0.1.0.36
+DISTNAME= biolibc-tools-0.1.1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
-GITHUB_TAG= 0a781f7ec6566051382d7f4950fd673f73b7fb2f
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://github.com/auerlab/biolibc-tools
@@ -11,10 +10,13 @@ COMMENT= High-performance bioinformatics tools based on biolibc
LICENSE= 2-clause-bsd
BUILD_TARGET= depend all
+MAKE_ENV+= VERSION=${PKGVERSION}
INSTALL_TARGET= install-strip
+pre-build:
+ cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
+
.include "../../devel/xxhash/buildlink3.mk"
.include "../../devel/uthash/buildlink3.mk"
.include "../../biology/biolibc/buildlink3.mk"
-.include "../../devel/libxtend/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
diff --git a/biology/biolibc-tools/PLIST b/biology/biolibc-tools/PLIST
index 94e83cd7924..812e68d1b08 100644
--- a/biology/biolibc-tools/PLIST
+++ b/biology/biolibc-tools/PLIST
@@ -1,8 +1,22 @@
-@comment $NetBSD: PLIST,v 1.1 2021/08/31 15:55:16 bacon Exp $
-bin/fastq-derep.sh
-bin/fastx-derep
-bin/fastx2tsv
+@comment $NetBSD: PLIST,v 1.2 2021/12/14 19:05:39 bacon Exp $
+bin/blt
+libexec/biolibc-tools/chrom-lens
+libexec/biolibc-tools/extract-seq
+libexec/biolibc-tools/fasta2seq
+libexec/biolibc-tools/fastq-derep.sh
+libexec/biolibc-tools/fastx-derep
+libexec/biolibc-tools/fastx2tsv
+libexec/biolibc-tools/find-orfs
+libexec/biolibc-tools/gff2bed
libexec/biolibc-tools/uniq-seqs.awk
-man/man1/fastq-derep.sh.1
-man/man1/fastx-derep.1
-man/man1/fastx2tsv.1
+libexec/biolibc-tools/vcf-search
+man/man1/blt-chrom-lens.1
+man/man1/blt-extract-seq.1
+man/man1/blt-fasta2seq.1
+man/man1/blt-fastq-derep.sh.1
+man/man1/blt-fastx-derep.1
+man/man1/blt-fastx2tsv.1
+man/man1/blt-find-orfs.1
+man/man1/blt-gff2bed.1
+man/man1/blt-vcf-search.1
+man/man1/blt.1
diff --git a/biology/biolibc-tools/distinfo b/biology/biolibc-tools/distinfo
index d4fb5cd1a87..5686cd816e3 100644
--- a/biology/biolibc-tools/distinfo
+++ b/biology/biolibc-tools/distinfo
@@ -1,5 +1,5 @@
-$NetBSD: distinfo,v 1.3 2021/10/26 10:03:37 nia Exp $
+$NetBSD: distinfo,v 1.4 2021/12/14 19:05:39 bacon Exp $
-BLAKE2s (biolibc-tools-0.1.0.36-0a781f7ec6566051382d7f4950fd673f73b7fb2f.tar.gz) = 1a919142ac6a2fdec136ae63ca85f83885771ba7732586cdd8b4dd09b871bef7
-SHA512 (biolibc-tools-0.1.0.36-0a781f7ec6566051382d7f4950fd673f73b7fb2f.tar.gz) = 475fd700923e9e2aa660df80cd7cdb82f0b3386b6d9ebcd3518697616240af021bb5010ff53e885d2d1d582db291a614a7ecf2c5ac4c4e4883700f282fbfadc4
-Size (biolibc-tools-0.1.0.36-0a781f7ec6566051382d7f4950fd673f73b7fb2f.tar.gz) = 11611 bytes
+BLAKE2s (biolibc-tools-0.1.1.tar.gz) = 9b8d4999c641b0b5aaaef88102d59b4972b5f1a6b6782546e274128c57f19c98
+SHA512 (biolibc-tools-0.1.1.tar.gz) = cfd2e7bacef0093a87c28dd4fbab8ee7007e874ee638816c75f6df92dd436d13a1fb6d5faa8e97491711bece19b8bf7d3f5ed0301c732d6c86f4255872884ff6
+Size (biolibc-tools-0.1.1.tar.gz) = 21700 bytes