diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/arka/DESCR | 6 | ||||
| -rw-r--r-- | biology/arka/Makefile | 41 | ||||
| -rw-r--r-- | biology/arka/PLIST | 14 | ||||
| -rw-r--r-- | biology/arka/distinfo | 7 | ||||
| -rw-r--r-- | biology/arka/patches/patch-aa | 20 | ||||
| -rw-r--r-- | biology/arka/patches/patch-ab | 13 |
6 files changed, 101 insertions, 0 deletions
diff --git a/biology/arka/DESCR b/biology/arka/DESCR new file mode 100644 index 00000000000..d5fa76b4423 --- /dev/null +++ b/biology/arka/DESCR @@ -0,0 +1,6 @@ +Arka is a program that serves as a graphical interface for the programs from +the GP package. + +Furthermore, it has some interesting functions of it's own. The main scope +of the program is the manipulation and visualisation of DNA / RNA / protein +sequences. diff --git a/biology/arka/Makefile b/biology/arka/Makefile new file mode 100644 index 00000000000..5774e08f39f --- /dev/null +++ b/biology/arka/Makefile @@ -0,0 +1,41 @@ +# $NetBSD: Makefile,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ +# + +DISTNAME= arka-0.11 +CATEGORIES= biology +MASTER_SITES= http://bioinformatics.org/genpak/download/ +EXTRACT_SUFX= .tgz + +MAINTAINER= hdp@cs.nmsu.edu +HOMEPAGE= http://www.bioinformatics.org/genpak/ +COMMENT= Graphic interface for the programs from the GP package + +DEPENDS+= gp-[0-9]*:../../biology/gp + +USE_DIRS+= xdg-1.1 +USE_PKGINSTALL= YES + +CONF_FILES= ${PREFIX}/share/examples/arka/arkarc ${PKG_SYSCONFDIR}/arkarc +CPPFLAGS+= -DARKA_GLOBAL=\"${PKG_SYSCONFDIR}/arkarc\" +CPPFLAGS+= -DARKA_PROGRAMS=\"${PKG_SYSCONFDIR}/arkarc\" + +INSTALLATION_DIRS= bin man/man1 + +post-build: + cd ${WRKSRC} && ${GUNZIP_CMD} arka.1.gz + +do-install: + ${INSTALL_PROGRAM} ${WRKSRC}/arka ${PREFIX}/bin + ${INSTALL_MAN} ${WRKSRC}/arka.1 ${PREFIX}/man/man1 +.for f in arka_16x16.xpm arka_32x32.xpm + ${INSTALL_DATA} ${WRKSRC}/icons/${f} ${PREFIX}/share/pixmaps +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/arka +.for f in CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT TODO.TXT + ${INSTALL_DATA} ${WRKSRC}/${f} ${PREFIX}/share/doc/arka +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/examples/arka + ${INSTALL_DATA} ${WRKSRC}/arkarc ${PREFIX}/share/examples/arka + +.include "../../x11/gtk/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" diff --git a/biology/arka/PLIST b/biology/arka/PLIST new file mode 100644 index 00000000000..78344143409 --- /dev/null +++ b/biology/arka/PLIST @@ -0,0 +1,14 @@ +@comment $NetBSD: PLIST,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ +bin/arka +man/man1/arka.1 +share/doc/arka/CHANGES.TXT +share/doc/arka/INSTALL.TXT +share/doc/arka/LICENSE.TXT +share/doc/arka/README.TXT +share/doc/arka/TODO.TXT +share/examples/arka/arkarc +share/pixmaps/arka_16x16.xpm +share/pixmaps/arka_32x32.xpm +@comment in xdg-dirs: @dirrm share/pixmaps +@dirrm share/examples/arka +@dirrm share/doc/arka diff --git a/biology/arka/distinfo b/biology/arka/distinfo new file mode 100644 index 00000000000..9245737244e --- /dev/null +++ b/biology/arka/distinfo @@ -0,0 +1,7 @@ +$NetBSD: distinfo,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ + +SHA1 (arka-0.11.tgz) = 7b1e373cb7e74a70da8c2c423dd6d7f3fecd6960 +RMD160 (arka-0.11.tgz) = 203d155b292cd34cd00f36b4162756081f03a6fc +Size (arka-0.11.tgz) = 280123 bytes +SHA1 (patch-aa) = 97321d794aa8dbe525ac50eb8f2409572485aa56 +SHA1 (patch-ab) = 935e3100a86cc6b43ff62a202f6337765a003c6a diff --git a/biology/arka/patches/patch-aa b/biology/arka/patches/patch-aa new file mode 100644 index 00000000000..736b206756d --- /dev/null +++ b/biology/arka/patches/patch-aa @@ -0,0 +1,20 @@ +$NetBSD: patch-aa,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ + +--- src/Makefile.orig 2001-05-09 22:28:41.000000000 +0200 ++++ src/Makefile +@@ -1,5 +1,5 @@ + CC=gcc +-CFLAGS=`gtk-config --cflags` -Wall ++CFLAGS+=$(CPPFLAGS) `gtk-config --cflags` + + objects = komunikat.o main.o file.o interface.o genpak.o rcfile.o \ + graph.o graph3d.o help.o programs.o options.o misc.o seqed.o search.o \ +@@ -10,7 +10,7 @@ all: arka + mv arka .. + + arka: $(objects) +- gcc -o arka $(objects) `gtk-config --libs` -lm ++ gcc $(LDFLAGS) -o arka $(objects) `gtk-config --libs` -lm + + $(objects): main.h + diff --git a/biology/arka/patches/patch-ab b/biology/arka/patches/patch-ab new file mode 100644 index 00000000000..0b29500a3ab --- /dev/null +++ b/biology/arka/patches/patch-ab @@ -0,0 +1,13 @@ +$NetBSD: patch-ab,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ + +--- src/options.c.orig 2001-05-04 15:36:12.000000000 +0200 ++++ src/options.c +@@ -50,7 +50,7 @@ int options_initialize(opt_s *opt) { + opt->command_history_size = 20 ; + opt->file_history_size = 5 ; + +- opt->wdir = my_strdup(getenv("PWD")) ; ++ opt->wdir = getcwd(NULL, 0); + opt->wdir = realloc(opt->wdir, strlen(opt->wdir) + 2000) ; + strcat(opt->wdir, "/") ; + |