diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/bioperl/Makefile | 30 | ||||
| -rw-r--r-- | biology/bioperl/pkg/PLIST | 68 |
2 files changed, 17 insertions, 81 deletions
diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile index 1e40805a8c5..eab61448f0b 100644 --- a/biology/bioperl/Makefile +++ b/biology/bioperl/Makefile @@ -1,29 +1,31 @@ -# $NetBSD: Makefile,v 1.1.1.1 1999/04/16 14:43:35 rh Exp $ +# $NetBSD: Makefile,v 1.2 2000/08/27 07:10:59 jlam Exp $ # -DISTNAME= bioperl-0.04.4 -CATEGORIES= biology -MASTER_SITES= ftp://bio.perl.org/pub/DIST/ +DISTNAME= bioperl-0.04.4 +CATEGORIES= biology +MASTER_SITES= ftp://bio.perl.org/pub/DIST/ -MAINTAINER= packages@netbsd.org -HOMEPAGE= http://bio.perl.org/ +MAINTAINER= packages@netbsd.org +HOMEPAGE= http://bio.perl.org/ -USE_PERL5= yes +USE_PERL5= # defined +PERL5_PACKLIST= ${PERL5_SITEARCH}/auto/Bio/.packlist +PERL5_PACKLIST+= ${PERL5_SITEARCH}/auto/bp_sw/.packlist do-configure: - cd ${WRKSRC}; perl Makefile.PL - cd ${WRKSRC}/Compile/SW; perl Makefile.PL + cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PERL5} Makefile.PL + cd ${WRKSRC}/Compile/SW; ${SETENV} ${MAKE_ENV} ${PERL5} Makefile.PL pre-build: - cd ${WRKSRC}/Compile/SW/libs; make + cd ${WRKSRC}/Compile/SW/libs; ${MAKE_PROGRAM} post-build: - cd ${WRKSRC}/Compile/SW; make - cd ${WRKSRC}; make test - cd ${WRKSRC}/Compile/SW; make test + cd ${WRKSRC}/Compile/SW; ${MAKE_PROGRAM} + cd ${WRKSRC}; ${MAKE_PROGRAM} test + cd ${WRKSRC}/Compile/SW; ${MAKE_PROGRAM} test post-install: - cd ${WRKSRC}/Compile/SW; make install + cd ${WRKSRC}/Compile/SW; ${MAKE_PROGRAM} install ${INSTALL_DATA_DIR} ${PREFIX}/share/examples/bioperl cd ${WRKSRC}/examples; ${GTAR} cf - . \ | (cd ${PREFIX}/share/examples/bioperl; ${GTAR} xf -) diff --git a/biology/bioperl/pkg/PLIST b/biology/bioperl/pkg/PLIST index c9fe1f000db..4e429081653 100644 --- a/biology/bioperl/pkg/PLIST +++ b/biology/bioperl/pkg/PLIST @@ -1,62 +1,4 @@ -@comment $NetBSD: PLIST,v 1.1.1.1 1999/04/16 14:43:36 rh Exp $ -lib/perl5/man/man3/Bio::Parse.3 -lib/perl5/man/man3/Bio::Root::Err.3 -lib/perl5/man/man3/Bio::Root::IOManager.3 -lib/perl5/man/man3/Bio::Root::Object.3 -lib/perl5/man/man3/Bio::Root::Utilities.3 -lib/perl5/man/man3/Bio::Root::Vector.3 -lib/perl5/man/man3/Bio::Root::Xref.3 -lib/perl5/man/man3/Bio::Seq.3 -lib/perl5/man/man3/Bio::SimpleAlign.3 -lib/perl5/man/man3/Bio::Tools::AlignFactory.3 -lib/perl5/man/man3/Bio::Tools::Blast.3 -lib/perl5/man/man3/Bio::Tools::Blast::HSP.3 -lib/perl5/man/man3/Bio::Tools::Blast::HTML.3 -lib/perl5/man/man3/Bio::Tools::Blast::Run::LocalBlast.3 -lib/perl5/man/man3/Bio::Tools::Blast::Run::Webblast.3 -lib/perl5/man/man3/Bio::Tools::Blast::Sbjct.3 -lib/perl5/man/man3/Bio::Tools::Fasta.3 -lib/perl5/man/man3/Bio::Tools::RestrictionEnzyme.3 -lib/perl5/man/man3/Bio::Tools::SeqAnal.3 -lib/perl5/man/man3/Bio::Tools::SeqPattern.3 -lib/perl5/man/man3/Bio::Tools::WWW.3 -lib/perl5/man/man3/Bio::Tools::pSW.3 -lib/perl5/man/man3/Bio::UnivAln.3 -lib/perl5/man/man3/bioperl.3 -lib/perl5/site_perl/Bio/Parse.pm -lib/perl5/site_perl/Bio/Root/Err.pm -lib/perl5/site_perl/Bio/Root/Global.pm -lib/perl5/site_perl/Bio/Root/IOManager.pm -lib/perl5/site_perl/Bio/Root/Object.pm -lib/perl5/site_perl/Bio/Root/Utilities.pm -lib/perl5/site_perl/Bio/Root/Vector.pm -lib/perl5/site_perl/Bio/Root/Xref.pm -lib/perl5/site_perl/Bio/Seq.pm -lib/perl5/site_perl/Bio/SimpleAlign.pm -lib/perl5/site_perl/Bio/Tools/AlignFactory.pm -lib/perl5/site_perl/Bio/Tools/Blast.pm -lib/perl5/site_perl/Bio/Tools/Blast/CHANGES -lib/perl5/site_perl/Bio/Tools/Blast/HSP.pm -lib/perl5/site_perl/Bio/Tools/Blast/HTML.pm -lib/perl5/site_perl/Bio/Tools/Blast/Run/LocalBlast.pm -lib/perl5/site_perl/Bio/Tools/Blast/Run/Makefile.PL -lib/perl5/site_perl/Bio/Tools/Blast/Run/Webblast.pm -lib/perl5/site_perl/Bio/Tools/Blast/Run/postclient.pl -lib/perl5/site_perl/Bio/Tools/Blast/Sbjct.pm -lib/perl5/site_perl/Bio/Tools/Fasta.pm -lib/perl5/site_perl/Bio/Tools/RestrictionEnzyme.pm -lib/perl5/site_perl/Bio/Tools/SeqAnal.pm -lib/perl5/site_perl/Bio/Tools/SeqPattern.pm -lib/perl5/site_perl/Bio/Tools/WWW.pm -lib/perl5/site_perl/Bio/Tools/pSW.pm -lib/perl5/site_perl/Bio/UnivAln.pm -lib/perl5/site_perl/auto/bp_sw/autosplit.ix -lib/perl5/site_perl/bioperl.pod -lib/perl5/site_perl/bp_sw.pm -lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/Bio/.packlist -lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw/.packlist -lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw/bp_sw.bs -lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw/bp_sw.so +@comment $NetBSD: PLIST,v 1.2 2000/08/27 07:10:59 jlam Exp $ share/examples/bioperl/blast/blast_config.pl share/examples/bioperl/blast/blast_seq.pl share/examples/bioperl/blast/example.table1 @@ -131,11 +73,3 @@ share/examples/bioperl/simplealign.pl @dirrm share/examples/bioperl/blast/out @dirrm share/examples/bioperl/blast @dirrm share/examples/bioperl -@dirrm lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/bp_sw -@dirrm lib/perl5/site_perl/${MACHINE_ARCH}-netbsd/auto/Bio -@dirrm lib/perl5/site_perl/auto/bp_sw -@dirrm lib/perl5/site_perl/Bio/Tools/Blast/Run -@dirrm lib/perl5/site_perl/Bio/Tools/Blast -@dirrm lib/perl5/site_perl/Bio/Tools -@dirrm lib/perl5/site_perl/Bio/Root -@dirrm lib/perl5/site_perl/Bio |