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2012-06-03require bsd.prefs.mk before conditional check.obache2-2/+4
2012-06-02Fix broken build.dholland7-27/+207
(1) With gcc 4.5, cpp does not fold lines separated by a escaped newline in the output. Therefore when nasd_rpcgen runs its rpc definitions through cpp, what comes out contains syntax errors. The parser then reports these with SIGSEGV. First fix the cpp plumbing to use the cpp tool wrapper during build, and then have it use -traditional. (2) On amd64, roughly half the build thinks it's actually i386. Patch the other half to agree. This may not turn out to work, but it does build instead of dumping out bizarre compile errors.
2012-06-02Updated databases/mysql55 to 5.5.25adam1-1/+3
2012-06-02Changes 5.5.25:adam3-7/+18
* The --safe-mode server option now is deprecated and will be removed in MySQL 5.6. * Performance: InnoDB: Improved the algorithm related to adaptive flushing. This fix increases the rate of flushing in cases where compression is used and the data set is larger than the buffer pool, leading to eviction. * InnoDB: In a transaction using the REPEATABLE READ isolation level, an UPDATE or DELETE statement for an InnoDB table could sometimes overlook rows recently committed by other transactions. As explained in Section 14.3.9.2, “Consistent Nonlocking Reads”, DML statements within a REPEATABLE READ transaction apply to rows committed by other transactions, even if a query could not see those rows. * InnoDB: The Innodb_buffer_pool_pages_flushed status variable was incorrectly set to twice the value it should be. Its value should never exceed the value of Innodb_pages_written. * InnoDB: The error handling and message was improved for attempting to create a foreign key with a column referencing itself. The message suggested a potential problem with the data dictionary, when no such problem existed. * InnoDB: The CHECK TABLE statement could fail for a large InnoDB table due to a timeout value of 2 hours. For typical storage devices, the issue could occur for tables that exceeded approximately 200 or 350 GB, depending on I/O speed. The fix relaxes the locking performed on the table being checked, which makes the timeout less likely. It also makes InnoDB recognize the syntax CHECK TABLE QUICK, which avoids the possibility of the timeout entirely. * Replication: It was theoretically possible for concurrent execution of more than one instance of SHOW BINLOG EVENTS to crash the MySQL Server. * Replication: Statements using AUTO_INCREMENT, LAST_INSERT_ID(), RAND(), or user variables could be applied in the wrong context on the slave when using statement-based replication and replication filtering server options (see Section 16.2.3, “How Servers Evaluate Replication Filtering Rules”). * Replication: An INSERT into a table that has a composite primary key that includes an AUTO_INCREMENT column that is not the first column of this composite key is not safe for statement-based binary logging or replication. Such statements are now marked as unsafe and fail with an error when using the STATEMENT binary logging format. For more information, see Section 16.1.2.3, “Determination of Safe and Unsafe Statements in Binary Logging”, as well as Section 16.4.1.1, “Replication and AUTO_INCREMENT”.
2012-06-02Work around x11-links lossage with native X on NetBSD 5.dholland1-0/+20
x11-links rejects xf86vidmodeproto because it's too old according to the pkgsrc X xf86vidmodeproto bl3 file (which is at best dubious logic) and doesn't link it. Then the .pc file isn't available, so this package's configure script silently fails running pkg-config and sets XVIDTUNE_LIBS to empty. The build then fails at link time because no X libs at all have been requested. Fix it by feeding in the result of running the same pkg-config invocation outside pkgsrc. The fact that the native xf86vidmode is "too old" does not itself break the package.
2012-06-02Set USE_TOOLS instead of BUILD_DEPENDS to get csh, and use ${CSH}dholland1-5/+3
instead of "tcsh". This builds ok for me on NetBSD; if it turns out to cause trouble for anyone, revert it. The motivation was that the BUILD_DEPENDS accepted either tcsh or standalone-tcsh, and distbb was latching onto the latter and then failing trying to install it. If the package turns out to really need tcsh in some contexts, there are probably other ways to deal with this issue.
2012-06-02tv_sec isn't necessarily time_t. Fixes netbsd-5 build.dholland2-1/+19
2012-06-02Call time() correctly; fixes netbsd-5 build.dholland2-10/+24
2012-06-02Use BUILDLINK_TRANSFORM to remove -Werror=foo syntax not supported ondholland1-1/+5
netbsd-5.
2012-06-02Use BUILDLINK_TRANSFORM to drop unsupported -W options on netbsd-5.dholland1-1/+6
2012-06-02Clear PACKAGES in the build environment, as if it's set the build fails.dholland1-1/+2
2012-06-02Fix invalid version numbers.dholland1-3/+3
2012-06-02As the sqlite plugin in the PLIST is unconditional, and sqlite3 isdholland2-10/+6
innocuous and small compared to kde3, and built into netbsd-6 anyway, and the package finds sqlite3 regardless of whether it's buildlinked, always depend on sqlite3. Should fix build on netbsd-5. Remove commented-out traces of a sqlite3 option from options.mk. PKGREVISION++
2012-06-02bump PKGREV for geos shlib name changedrochner2-3/+4
2012-06-02bump pkgrev for geos shlib name changedrochner3-6/+7
2012-06-02update to 1.4.2drochner3-12/+15
changes: -bugfixes -optimizations -minor feature additions -translation updates approved by The Maintainer
2012-06-02update to 1.9.1drochner4-26/+8
changes: bugfixes approved by The Maintainer pkgsrc note: bumped ABI requirement in bl3 file due to geos shlib name change
2012-06-02shlib name changed -> bump ABI requirementdrochner1-2/+2
2012-06-02Note update of net/pear-SOAP package to 0.13.0.taca1-1/+2
2012-06-02Update pear-SOAP package to 0.13.0. Fix PR pkg/46520.taca2-6/+6
Changelog: * Rename QName::ns property to QName::prefix. * Fix parsing multipart/related responses (Bugs #14756, #14854). * Fix parsing certain WSDLs with attachments (Bill Blough, Bug #16968). * Use PCRE instead of ereg_* functions (Olle Jonsson, Bug #17726).] QA release Bug #11729 WSDL Local File loading Bug #14344 Use Net_Server in SOAP_Server_TCP Bug #14756 multipart/related response is not parsed Bug #14782 logic problem in SOAP_Base bulids multidimensional arrays instead of flat Bug #14854 multipart/related responses no longer handled correctly Bug #16968 Bad array assignment when using WSDL client Bug #17659 Assigning the return value of new by reference is deprecated Bug #17726 Patch: Using PCRE functions to avoid deprecated functions Bug #18458 Returning SOAP_Attachment in MIME Bug #18492 Wrong response when returning multiple results
2012-06-02Added security/p5-BSD-arc4random version 1.50 [bsiegert 2012-06-02]bsiegert1-1/+2
2012-06-02+ p5-BSD-arc4randombsiegert1-1/+2
2012-06-02Import BSD::arc4random from wip. From DESCR:bsiegert3-0/+34
This module provides a Perl API for the BSDs' arc4random(3) suite of functions and adds a few high-level functions, such as the new arc4random_uniform(3). The Perl functions are ithreads-safe (only if threads::shared is required). Scalars can be tied to this pak- kage, yielding uniformly distributed random numbers with an arbi- trary upper bound on read access, contributing to the RC4 entropy pool on write access. An exported global $RANDOM variable returns 15-bit unsigned random numbers, from [0; 32767], similar to mksh. Furthermore, Perl's internal PRNG is seeded with entropy obtained from the arc4random generator once on module load time.
2012-06-02Updated net/pear-Net_LDAP2 to 2.0.12obache1-1/+2
2012-06-02Update pear-Net_LDAP2 to 2.0.12.obache2-6/+6
per maintainer update request by PR 46517. ChangeLog: 2.0.12 Changelog: * inmproved performance with large search results * Fixed some minor issues with Net_LDAP2_Filter and Net_LDAP2->dnExists() * Added NOT filter to Net_LDAP2_Filter::create() so negating is more easily now 2.0.11 Changelog: * (doc issue) Fix for #17861: Missing komma in example * Fix for #18202: Adding attributes to a Fresh Entry saving and laterly updating fails 2.0.10 Changelog: * Added schema handling methods to make schema checks more easily accessible * Bugfix for #17245. The check in the code was not working properly. Schema checking is considered the users responsibility. If now an attribute is requested that is not set at the entry, an empty string is returned. * Bugfix for #17770. Some Net_LDAP2 files were included with relative path ("Util.php"), not absolute ("Net/LDAP2/Util.php"). * Bugfix for #17314. LDIF support for attributes with modifiers ("attr1;binary").
2012-06-02Updated net/p5-Net-Server to 2.002obache1-1/+2
2012-06-02Update p5-Net-Server to 2.002, for full IPv6 support.obache2-7/+6
PR 46515 by Francois Tigeot. 2.002 May 31 2012 - Make HTTP output header parsing more consistent - and catch more errors - Add exec_cgi and exec_trusted_perl methods to HTTP - Add bugfix for ipv=>"*" combined with UNIX sockets. (Mark Martinec) - Fix the SSL_test.t to use exit rather than quit so the parent departs 2.001 May 30 2012 - Bug fix wrong usage of File::Temp::tempfile. - Fix HTTP_COOKIES to be HTTP_COOKIE - Handle multiple header values better in HTTP - Add Log::Log4perl logging courtesy of TONVOON@cpan 2.000 May 30 2012 - Sorry for the amazingly long delay. This release represents change to much of the code base. Future patch submissions should be more promptly handled - Bring Net::Server::Proto::SSL back. It is now fully functional under all scenarios, including IPv4 and IPv6 - Change Proto interface to allow passing more information. This represents an internal API change. - Updates to the HUP mechanisms to make sure we rebind all types of ports correctly. - Add IPv6 integration via ::1 style addresses as well as the ipv configuration parameter (Mark Martinec) - Added graceful shutdown (Tatsuhiko Miyagawa) - Added hot deploy via TTIN and TTOU (Tatsuhiko Miyagawa) - Internal code retidying - Finish out support for connecting to ports by service name - Don't loose track of fork and prefork children on a hup - make sure to actively wait them off - Correct accept to take a classname, and optionally be called in array context - Cleanup numerous configuration issues. - Added sig_passthrough option to Fork, PreFork, and PreForkSimple servers allowing for arbitrary signals to propagate to children - Add syswrite/sysread support to SSLEAY (Sergey Zasenko). - Add PSGI module. - Many small accumulated bugfixes.
2012-06-02Updated math/py-gmpy to 1.15obache2-3/+3
2012-06-02Update py-gmpy to 1.15.obache3-14/+9
Based on PR 46507 by Wen Heping. * let to register egg-info. * all files in distfile are not DOS style EOL oter than Windows related files, so remove extract option for ZIP. GMPY 1.15 is a bug fix release. The following bugs were fixed: * Reference counting leak in divmod(x,0). * Fatal crash in remove(x,1). * Discontinue use of custom memory allocator. (Fixes compatibility with Sage.) * Allow up to base-62 integer conversion.
2012-06-02remove buildlink3.mk, this package have no contents to buildlink.obache1-13/+0
2012-06-02Updated math/py-networkx to 1.6obache2-3/+3
2012-06-02Update py-networkx to 1.6.obache3-37/+391
Based on PR 46506 by Wen Heping. * let to register egg-info. * marked as incompatible with python 2.5, as new features in 1.3. but not marked as compatible with 3.x, one file will not be compiled well both 3.1 and 3.2. Lease Log: Networkx-1.6 Release date: 20 November 2011 Highlights New functions for finding articulation points, generating random bipartite graphs, constructing adjacency matrix representations, forming graph products, computing assortativity coefficients, measuring subgraph centrality and communicability, finding k-clique communities, and writing JSON format output. New examples for drawing with D3 Javascript library, and ordering matrices with the Cuthill-McKee algorithm. More memory efficient implementation of current-flow betweenness and new approximation algorithms for current-flow betweenness and shortest-path betweenness. Simplified handling of "weight" attributes for algorithms that use weights/costs/values. See Version 1.6 notes and API changes. Updated all code to work with the PyPy Python implementation http://pypy.org which produces faster performance on many algorithms. For full details of the tickets closed for this release (added features and bug fixes) see: https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.6 API Changes See Version 1.6 notes and API changes: http://networkx.lanl.gov/reference/api_1.6.html Networkx-1.5 Release date: 4 June 2011 For full details of the tickets closed for this release see: https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.5 Highlights New features * Algorithms for generating and analyzing bipartite graphs * Maximal independent set algorithm * Erd?s-Gallai graphical degree sequence test * Negative edge cycle test * More memory efficient Dijkstra path length with cutoff parameter * Weighted clustering coefficient * Read and write version 1.2 of GEXF reader format * Neighbor degree correlation that handle subsets of nodes * In-place node relabeling * Many `weighted' graph algorithms now take optional parameter to use specified edge attribute (default=`weight') (ticket 509) * Test for distance regular graphs * Fast directed Erd?s-Renyi graph generator * Fast expected degree graph generator * Navigable small world generator * Waxman model generator * Geographical threshold graph generator * Karate Club, Florentine Families, and Davis' Women's Club graphs API Changes See Version 1.5 notes and API changes http://networkx.lanl.gov/reference/api_1.5.html Bug fixes * Fix edge handling for multigraphs in networkx/graphviz interface (ticket 507) * Update networkx/pydot interface for new versions of pydot (ticket 506), (ticket 535) * Fix negative cycle handling in Bellman-Ford (ticket 502) * Write more attributes with GraphML and GML formats (ticket 480) * Handle white space better in read_edgelist (ticket 513) * Better parsing of Pajek format files (ticket 524) (ticket 542) * Isolates functions work with directed graphs (ticket 526) * Faster conversion to numpy matrices (ticket 529) * Add graph[`name'] and use properties to access Graph.name (ticket 544) * Topological sort confused None and 0 (ticket 546) * GEXF writer mishandled weight=0 (ticket 550) * Speedup in SciPy version of PageRank (ticket 554) * Numpy PageRank node order incorrect + speedups (ticket 555) Networkx-1.4 Release date: 23 January 2011 New features * k-shell,k-crust,k-corona * read GraphML files from yEd * read/write GEXF format files * find cycles in a directed graph * DFS and BFS algorithms * chordal graph functions * Prim's algorithm for minimum spanning tree * r-ary tree generator * rich club coefficient * NumPy matrix version of Floyd's algorithm for all-pairs shortest path * read GIS shapefiles * functions to get and set node and edge attributes * and more, see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.4 API Changes * gnp_random_graph() now takes a directed=True|False keyword instead of create_using * gnm_random_graph() now takes a directed=True|False keyword instead of create_using Bug fixes * see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.4 Networkx-1.3 Release date: 28 August 2010 See: https://networkx.lanl.gov/trac/timeline New features * Works with Python versions 2.6, 2.7, 3.1, and 3.2 (but not 2.4 and 2.5). * Minimum cost flow algorithms * Bellman-Ford shortest paths * GraphML reader and writer * More exception/error types * Updated many tests to unittest style. Run with: "import networkx; networkx.test()" (requires nose testing package) * and more, see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.3 API Changes * minimum_spanning_tree() now returns a NetworkX Graph (a tree or forest) Bug fixes * see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.3
2012-06-02Updated www/mediawiki to 1.19.0obache2-3/+3
2012-06-02Update meidawiki to 1.19.obache3-193/+1024
PR 46505 by Wen Heping (take maintainership). Bump two branches, contains many bug fixes, new features, and some of them break compatibility, so for migration from 1.17 branch, please refer release notes: https://www.mediawiki.org/wiki/Release_notes/1.19 https://www.mediawiki.org/wiki/Release_notes/1.18
2012-06-02Updated pkgtools/pkglint to 4.109cheusov1-1/+2
2012-06-02Do not treat variable GNU_PROGRAM_PREFIX as a special one.cheusov2-4/+3
Dump version.
2012-06-02Updated sysutils/coreutils to 8.13nb2cheusov1-1/+2
2012-06-02Updated misc/gnuls to 8.13nb2cheusov1-1/+2
2012-06-02Updated archivers/gcpio to 2.6nb10cheusov1-1/+2
2012-06-02Updated archivers/gsharutils to 4.11.1nb2cheusov1-1/+2
2012-06-02Updated devel/diffutils to 3.2nb2cheusov1-1/+2
2012-06-02Updated devel/gindent to 2.2.9nb3cheusov1-1/+2
2012-06-02Updated devel/gmake to 3.82nb5cheusov1-1/+2
2012-06-02Updated devel/m4 to 1.4.16nb3cheusov1-1/+2
2012-06-02Updated editors/ed to 1.1nb2cheusov1-1/+2
2012-06-02Updated time/gnutime to 1.7nb1cheusov1-1/+2
2012-06-02Updated sysutils/findutils to 4.2.33nb3cheusov1-1/+2
2012-06-02Updated textproc/grep to 2.5.3nb3cheusov1-1/+2
2012-06-02Updated textproc/gsed to 4.2.1nb4cheusov1-1/+2
2012-06-02Updated archivers/gtar-base to 1.26nb2cheusov1-1/+2
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