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2020-06-29databases/db18: import db18-18.1.40ryoon12-0/+5943
Berkeley DB is an embeddable database system that supports keyed access to data. The software is distributed in source code form, and developers can compile and link the source code into a single library for inclusion directly in their applications. Developers may choose to store data in any of several different storage structures to satisfy the requirements of a particular application. In database terminology, these storage structures and the code that operates on them are called access methods. The library includes support for the following access methods: * B+tree: Stores keys in sorted order, using either a programmer-supplied ordering function or a default function that does lexicographical ordering of keys. Applications may perform equality or range searches. * Hashing: Stores records in a hash table for fast searches based on strict equality. Extended Linear Hashing modifies the hash function used by the table as new records are inserted, in order to keep buckets underfull in the steady state. * Fixed and Variable-Length Records: Stores fixed- or variable-length records in sequential order. Record numbers may be immutable or mutable, i.e., permitting new records to be inserted between existing records or requiring that new records be added only at the end of the database. This package privides Berkeley DB 18 released under GNU AGPL3.
2020-06-29go-kr-prettynikita1-1/+2
2020-06-29doc: Remove accidental additionsnia1-3/+1
2020-06-29Updated x11/qt5-qscintilla, x11/py-qt5-qscintillaadam1-1/+3
2020-06-29qt5-qscintilla py-qt5-qscintilla: updated to 2.11.5adam9-58/+97
QScintilla v2.11.5 has been released. This is a minor bug-fix release.
2020-06-29doc: Updated databases/db6 to 6.2.32ryoon1-1/+2
2020-06-29db6: Update to 6.2.32ryoon7-124/+48
* Suggested by Jesus Cea. * Remove patch for FreeBSD 10 or later. Changelog: Changes between version 12.1.6.2.23 and version 12.1.6.2.32 Modified the ex_rep_base example to accept IPv6 addresses. [#24371] Fixed a bug where SQL authentication APIs might raise assertion failures. [#24598] The SQLite user authentication extension now always requires encryption. To build with the authentication extension, encryption must be enabled. Otherwise, it results in a compiler error. To convert a database to require authentication, the database must be encrypted. sqlite3_user_authenticate() now always returns SQLITE_AUTH if called on a database that does not require authentication. [#24598] Fixed a bug where an application might hang because it could not obtain a TAS lock when running Linux on Sparc architecture. [#24805] Added tests memp009 and mut004. [#24974] When the number of free mutexes is low, removed databases and closed unnamed in-memory databases are purged from the memory pool to free mutexes. [#24974] Fixed a bug where built-in atomic functions are used only when --enable-cxx is specified. [#24974] Fixed a possible crash when using the Java API and slices. [#24988] Added cross-compile support for detecting built-in atomic functions. [#25055] Fixed undefined symbol errors for configurations including --enable-dtrace and -enable-perfmon_statistics when replication is also enabled. [#25061] Added the db_convert utility program which converts the byte order of all databases in database files. [#25086] Increased the number of instances in which failchk can successfully clean the environment without requiring full recovery after a thread crashes while using Berkeley DB. [#25087] Added DPL APIs to BDB Java client driver. [#25089] Attempting to open an environment while it is being recovered now returns a new error message, which includes the time. [#25204] Improved db_verify's handling of corrupted database files. [#25239] Adjusted configure scripts to handle FreeBSD 10 or greater. [#25251] Fixed a bug where setting the absolute path of a file on Windows could result in the file being created on the wrong disk. [#25284] Syncing a database with external files will now also sync the meta database associated with the external files. [#25284] Add support for -with-mutex=BSD/OSSpinLockTry, to avoid using the undocumented spin_lock_try function, which is not permitted on iOS. [#25342] Fixed a bug preventing some changes to external files performed through the DB_STREAM API from replicating to the clients. [#25432] Fixed a bug where automatic log removal did not work on Windows Mobile 6.5. [#25449] Fixed bugs where printed statistics might contain "unknown" flags. [#25461] Fixed a bug where hot backup of queue extent files did not follow the original directory structure. [#25545] Fixed a bug where ADO .Net package had debug pre-processors for release configurations. [#25549] Added PRAGMA statistics, which prints out statistics about the database and its environment. [#25550] Added PRAGMA statistics_files, which redirects output from the statistics PRAGMA to a file. [#25550] Internal Berkeley DB messages are now redirected to the same file where internal Berkeley DB error messages are redirected. [#25568] Fixed a bug that could cause a client undergoing internal initialization to fail to request all the necessary logs for a correct recovery. The major symptom of this bug was that some client database files were left with empty pages that would later cause log sequence errors or other failures. [#25624] Added a new field in the per-thread statistics output: the number of locked mutexes. [#25690] The -c option of db_hotbackup can now work with replication manager applications. The -c option cannot be used with base replication applications. [#25702] Fixed a bug where the configure script may fail to find the JNI include directories on Mac OS X. [#25713] Fixed a bug where mutexes could not be acquired on arm64-v8a Android systems. [#25752] Fixed a bug where the JAVACFLAGS environment variable was not passed to the JDBC driver. [#25752] Fixed a bug where clients in the replication group might panic during synchronization with the master. [#25800] Fixed possible segfaults when running db_verify with external files. [#25920] Added Visual Studio 2015 solution files to the SQL ADO.NET package. [#25946] Fixed a bug where setting initial number of lockers might cause segfault. [#26085] Fixed a bug where client specific log records resulted in incorrect calculation of subsequent log offset. This would later result in a DB panic on master. [#26090]
2020-06-29go-kr-prettynikita1-1/+2
2020-06-29devel/go-kr-pretty: import go-kr-pretty-0.2.0nikita5-0/+57
Go package pretty provides pretty-printing for Go values.
2020-06-29Updated devel/xxhash, misc/stellariumadam1-1/+3
2020-06-29stellarium: updated to 0.20.2adam3-10/+10
0.20.2: The major changes of this version: - Many changes in AstroCalc tool and core of Stellarium - Many changes in scripting engline and Script Console - Many changes in Oculars and Satellites plugins - Updated DSO catalog
2020-06-29xxhash: updated to 0.7.4adam3-42/+23
xxHash v0.7.4 - Finalizing XXH3 and XXH128 xxHash v0.7.4 is the last evolution of xxh3 and xxh128, primarily designed to finalize the algorithm. It is considered release candidate for v0.8.0, which means that if all goes right, this version will rebranded v0.8.0, almost "as is", within the next few weeks, after receiving sufficient feedback. v0.8.0 is the official version after which XXH3 and XXH128 are considered "stabilized", meaning that return values will never change given the same input and seed, making the hash suitable for long-term storage and transmission. Beyond these "final touches", the new version also brings a few notable improvements.
2020-06-29doc: Updated biology/gnome-chemistry-utils to 0.14.16ryoon2-3/+3
2020-06-29doc: Restore some linesryoon1-1/+12
2020-06-29doc: Added devel/py-cpplint version 1.5.1wiz1-1/+2
2020-06-29devel/Makefile: + py-cpplintwiz1-1/+2
2020-06-29devel/py-cpplint: import py-cpplint-1.5.1wiz5-0/+56
Cpplint is a command-line tool to check C/C++ files for style issues following Google's C++ style guide. Cpplint is developed and maintained by Google Inc. While Google maintains cpplint, Google is not (very) responsive to issues and pull requests, this fork aims to be (somewhat) more open to add fixes to cpplint to enable fixes, when those fixes make cpplint usable in wider contexts.
2020-06-29doc: Updated lang/py-cmake-language-server to 0.1.2wiz2-3/+3
2020-06-29py-cmake-language-server: update to 0.1.2.wiz2-7/+7
Changes: not found.
2020-06-29doc: Updated devel/cppcheck to 2.1wiz1-1/+2
2020-06-29cppcheck: update to 2.1.wiz2-9/+17
2.1 This is a minor release. We have tweaked build scripts. * When you use USE_Z3=yes, we will handle new versions of z3 better. If you have an old z3 library and get compilation problems you will need to add a z3_version.h in externals. * The cmake scripts were updated. There was a couple of bug fixes. New check: * for "expression % 1" the result is always 0. 2.0 Overview The command line is not changed drastically. Your old cppcheck scripts should work as before. Compiling: There is a new dependency Z3. When compiling with the Makefile it is highly recommended to use "USE_Z3=yes". Improved clang-tidy integration Several fixes to; improve parsing detect more bugs with existing checks fix false alarms Clang import Clang is a C/C++ compiler that has a very robust and well made parser. Cppcheck will always use its internal parser by default. However there is now an option to use the Clang parser instead. It is recommended that you use the default internal Cppcheck parser unless you notice that it fails to parse your code properly (syntax errors, strange false alarms). Bug hunting There is a new "soundy" analysis in Cppcheck that should detect most bugs. You should expect false alarms, however the false alarms will not be overwhelming. This new "soundy" analysis is not intended to replace normal Cppcheck analysis. There are use cases where false alarms can not be tolerated. We have added 1 checker and that checks for division by zero: It detects all "integer division by zero" bugs in the Juliet test suite. It detects all "division by zero" bugs in the ITC test suite. There was 28 division by zero CVEs published in 2019 for C/C++ open source projects, and we could quickly see that 21 of the bugs are found by Cppcheck. There is no CVE bug that we know Cppcheck fails to diagnose. But there are 7 CVEs that would require additional investigation to establish if it is really detected or not. You can read more about this analysis in the "Bug hunting" chapter in the manual.
2020-06-29doc: Added games/love11 version 11.3nia2-13/+5
2020-06-29gnome-chemistry-utils: Update to 0.14.16ryoon8-369/+354
Changelog: Version 0.14.16: GChemPaint: * Do not show buttons for non yet implemented tools. Version 0.14.15: GCCV library: * Don't use the abs() function on unsigned numbers. Other: * Updated appdata files. Version 0.14.14: Mozilla plugin: * Fix build. Version 0.14.13: GChemPaint: * Optional use of Lasem to display maths. * Fix rendering with gtk+ >= 3.20. * Fix crash with atom charges larger than 1. * Fix crash when deleting a bond outside a molecule. [#48256] Gnumeric plugin: * Add monoisotopicmass function in gnumeric and more. Databases: * Update names for elements 113, 115, 117 and 118. Version 0.14.12: GChemPaint: * Enhanced Chemdraw formats support. [sr #108952] * Optional use of Lasem to display maths. * Fix rendering with gtk+ >= 3.20. GChemCalc: * Don't crash on "Ac" string. [#47366] Version 0.14.11: GChemPaint: * Fix an infinite loop condition in retrosyntheses alignment. * Don't crash when importing an invalid string. [Redhat bug #1285154] * Fix drawing when zoomed. * Fix various runtime errors. * Fix crash when creating a reaction with no product. * Enhanced Chemdraw formats support. * Fix embedding of a whole molecule inside brackets. [#47224] GChemTable: * Don't crash when showing an already existing chart. [Redhat bug #1302135] GCrystal: * Fix build with gcc-6. [Redhat bug #1307546] GCrystal and GChem3D: * Don't crash when rendering to memory (images and print). [#47169] Other: * Added keywords to desktop files. * Updated appdata files. Version 0.14.10: GChemPaint: * Fix an object bounds issue. Mozilla plugin: * Supports the npapi-sdk package as requirement. Other: * Fixed typos in appdata files. Version 0.14.9: GChemPaint: * Ensure that the document size is always updated. [#43091] 3d viewer and GCrystal: * Fix rotation. [#42977] (patch from Toni Andjelkovic) All applications: * Add appdata files. Version 0.14.8 GChemPaint: * Fix drawing with Gtk+ >= 3.10. Version 0.14.7 GCrystal: * Fix crash in dialogs with recent Gtk+. Mozilla plugin: * Fix crashers for 2D and 3D molecules. Version 0.14.6 3d viewer: * Avoid empty entries in recent list. CGchemPaint: * Restore .mol files support. * Fix CML import (also affected 3d viewer and >GCrystal). * Fix BMP export. GCrystal: * Fix test order in lines code. [#41261] GSpectrum: * Fix access to uninitialized data. * Don' double free a string. GOffice component: * Don't crash when editing after saving a GChemPaint object. Mozilla plugin: * Fix supported mime-types list. (see Debian bug #716961) Other: * Fix build on FreeBSD (Koop Mast). [#41256] Version 0.14.5 GChemPaint: * Make adding template work again. Version 0.14.4 GChemPaint: * Do not use a NULL atom properties. [#40194] Version 0.14.3 GChemPaint: * Really close the window on delete event. * Don't crash when aligning ungrouped objects. GChemTable: * Fix crash when using masses in a graph. * Fix graph behavior after edition. All: * Make sure to not create a C++ locale from a NULL string. Version 0.14.2 GChemPaint: * Fix crash when loading some molecules (was introduced in 0.14.1). Version 0.14.1 GChemPaint: * Do not allow a mesomery destruction when inside a reaction. * Fix molecule deletion inside a mesomery. * Fix reactant deletion inside a reaction. * Don't crash when a mesomery inside a reaction is destroyed. * Check molecule consistency when loading, avoids a stack overflow. * Enhanced representaion of chiral molecules imported from CML and other formats. * Fix crash when deleting a cyclic bond. GCrystal: * Fix row selection operations order in grids. Version 0.14.0 GChemPaint: * Fix reaction construction. * Fix non bonding electron pairs. Version 0.13.99 GChemPaint: * Fix squiggle bonds period. * Allow brackets around a mesomery. * Allow a mesomery inside a reaction. * Fixed some meomory access issues. * Fixed crash when loading a group. * Fixed mesomery construction. * Fixed crash when ungrouping. Version 0.13.98 GChemPaint: * Don't freeze after an aborted molecules merge. * Initialize the bond order for the Newman projection tool. * Don't crash when adding brackets around a fragment. * Fix undoing a molecule partial flip. * Fix bracket stoichiometry index position after a transform. * Fix explicit lone pairs count evaluation. Version 0.13.92 GChemCalc * Updated the documentation. GChemPaint: * Fix View::BuildSVG() and View::BuildEPS() which were missing the trailing 0. * Fix misleading error message while saving. * Fix loading of arrows inside a group. [#27032] GCrystal: * Apply element change to all slected atoms. * Updated the documentation. GSpectrum: * Add "Response factor" as supported unit. * Fixed widgets spacing. * Updated the documentation. GChemTable: * Updated the documentation. Version 0.13.91 3d viewer: * Show all menu items when a molecule is loaded from the command line. * Updated user documentation. GChemPaint: * Don't crash on startup. All: * Fix localization issues. * Fixed modal message boxes behavior. Version 0.13.90 3d viewer: * Fix import from pdb files. [#36582] GCrystal: * Fix infinite loop condition. [#36583] * Fix atomic radius change issue. GChemTable: * Fix languages translation. Version 0.13.7 GChemPaint: * Fixed crash when selecting the alignment item inside a mechanism step. [#35626] GCrystal: * Fixed loading CIF files using uptodate space groups descriptions. Other: * License is now GPL version 3 (except for the OpenBabel related code). * Fix build on big endian machines (Dan Horak). [#36175] * Updated API documentation. Version 0.13.6 GChemPaint: * fixed text position serialization. [#34947] * add some support for Newman projections. * accept some multisteps reactions. Goffice component: * Add support for 3D molecular structures. Other: * Fixed pixmaps installation directory. [#35272] * fixed build with ->l,--no-undefined. [patch #7677] Version 0.13.5 3d viewer: * Import from InChI or SMILES. * Export to GChemPaint and GChemCalc. * Generates InChI, InChiKey and SMILES. * Add access to databases. GChemPaint: * Brackets inside a molecule accept a stoichiometry coefficient. GCrystal: * Use multiple selection in atoms and lines dialogs. GSpectrum: * Allow markup in combo boxes and axes titles. Goffice component: * Add support for crystal structures. Other: * Fixed one more OpenGL related crasher. Version 0.13.4 All: * Ported to Gtk+-3.0. GCrystal: * Use the new GcrGrid item in atoms, lines and cleavages dialogs. * Make these and size dialogs instant apply. GChemTable: * Use a more complete tip window for elements. Version 0.13.3 GChemPaint: * Fixed build with gcc-4.6. [#32363] * Allow colored atomic symbols on a per-document basis. * Brackets tool now working, not perfectly though. Other: * Don't use POLLRDHUP when not defined. [#32768] * Split libgcu so that libgcu itself never calls gtk+ directly. Version 0.13.2 GChemPaint: * Do not allow document changes using keyboard while dragging the mouse. [#31812] * Don't add new molecules when undoing a mechanism arrow deletion. [#32433] * Removed the Wikipedia tool which was obsolete. * Reorganized molecule contextual menu with new 3D options and databases access. Other: * OpenBabel support has been moved to a separate process and greatly enhanced, specially for 3D export from gchempaint. * A lot of bugs have been fixed. Version 0.13.1 GSpectrum: * Loads NUTS files. * Transforms FID to spectrum. Version 0.13.0 GChemPaint: * New "lasso" tool to allow partial selections. * New "brackets" tool (doesn't work yet). Other: * libgcr: new library for GCrystal. * Fixed all bugs discovered in the 0.12 banch.
2020-06-29go-kr-textnikita1-1/+2
2020-06-29games: Add love11. Based on work by myself and cfkoch in wipnia11-16/+113
LOVE is a framework for making 2D games in the Lua programming language. LOVE is totally free, and can be used in anything from friendly open-source hobby projects, to evil, closed-source commercial ones.
2020-06-29Add textproc/go-kr-text version 0.2.0nikita6-1/+75
Go package for manipulating paragraphs of text.
2020-06-29go-orgnikita1-1/+2
2020-06-29go-org: pkgversion_norevnikita1-2/+2
2020-06-29Add textproc/go-org version 1.1.0nikita6-1/+125
Org mode parser with html & pretty printed org rendering in Go.
2020-06-29Update devel/apache-maven to 3.6.3.yyamano2-3/+3
2020-06-29go-gift: use pkgversion_norevnikita1-2/+2
2020-06-29changes: go-ptynikita1-1/+2
2020-06-29Add devel/go-pty version 1.1.11nikita6-1/+89
Pty is a Go package for using unix pseudo-terminals.
2020-06-29changes: go-giftnikita1-1/+2
2020-06-29Add graphics/go-gift version 1.2.1nikita6-1/+140
Package gift provides a set of useful image processing filters with no external dependencies outside of the Go standard library. SUPPORTED FILTERS: Transformations - Crop(rect image.Rectangle) - CropToSize(width, height int, anchor Anchor) - FlipHorizontal() - FlipVertical() - Resize(width, height int, resampling Resampling) - ResizeToFill(width, height int, resampling Resampling, anchor Anchor) - ResizeToFit(width, height int, resampling Resampling) - Rotate(angle float32, backgroundColor color.Color, interpolation Interpolation) - Rotate180() - Rotate270() - Rotate90() - Transpose() - Transverse() Adjustments & effects - Brightness(percentage float32) - ColorBalance(percentageRed, percentageGreen, percentageBlue float32) - ColorFunc(fn func(r0, g0, b0, a0 float32) (r, g, b, a float32)) - Colorize(hue, saturation, percentage float32) - ColorspaceLinearToSRGB() - ColorspaceSRGBToLinear() - Contrast(percentage float32) - Convolution(kernel []float32, normalize, alpha, abs bool, delta float32) - Gamma(gamma float32) - GaussianBlur(sigma float32) - Grayscale() - Hue(shift float32) - Invert() - Maximum(ksize int, disk bool) - Mean(ksize int, disk bool) - Median(ksize int, disk bool) - Minimum(ksize int, disk bool) - Pixelate(size int) - Saturation(percentage float32) - Sepia(percentage float32) - Sigmoid(midpoint, factor float32) - Sobel() - Threshold(percentage float32) - UnsharpMask(sigma, amount, threshold float32)
2020-06-29openbabel: Fix PLISTryoon1-2/+2
2020-06-29Update apache-maven to 3.6.3. Closes PR pkg/55221.yyamano3-30/+30
The patch is provided by Vicente Chaves. Thank you! Changes from Maven 3.6.2 to 3.6.3 * This is a regression release to fix some critical issues shipped with 3.6.2. * Some license issues on binary distribution have been fixed. * This Maven distribution is now Reproducible: if you download Maven source archive (apache-maven-3.6.3-src.zip or .tar.gz), build it on Windows with JDK 8 using following command: See https://maven.apache.org/docs/3.6.3/release-notes.html for the detailed issue list. Changes from Maven 3.6.1 to 3.6.2 * This release focuses mostly performance improvements, better memory footprint, and less CPU usage. * We are continuing to convert Maven Core to use JSR 330 annotations instead of Plexus (still not finished, see MNG-5577). * New support for 'release' qualifier (see MNG-6655). * The toolchain.xml file supports environment variables (see MNG-6665). See https://maven.apache.org/docs/3.6.2/release-notes.html for the detailed issue list. Changes from Maven 3.6.0 to 3.6.1 * An issue has been fixed causing multiple executions of plugin goals, related to using parallel build options like mvn plugin:goal -T 4. This resulted in duplicated executions of phases. This has been fixed with MNG-5965. * NullPointerException related to call in parallel build like mvn -T 1C clean javadoc:aggregate MNG-5705 * A performance issue related to artifact transfer has been found related to WAGON-537. It has been solved via the update to Maven Wagon 3.3.1. * There had been issues related calling Maven script like this: mvn -f .. * Having parentheses within the path, which has been fixed with MNG-6346. * Script can break having special characters as part of the path, which has been solved with MNG-6256. * Issue related to the Maven Resolver API which broke some IDEs (for example https://youtrack.jetbrains.com/issue/IDEA-201282); this has been fixed by MNG-6538. * Issue related to missing event for ToolchainsBuildingResult on EventSpy MNG-6558. * Issue related to support Java 9+ ClassLoader.findClass(String moduleName, String name) in Mojos. This has been fixed with MNG-6543. * Improvement about the memory consumption has been done with MNG-6571. * Issue related to relative parent POM resolution failing in 3.5.0 with complex multimodule builds has been fixed with MNG-6261. * Missing export for org.slf4j.event.Level has been done with MNG-6618 See https://maven.apache.org/docs/3.6.1/release-notes.html for the detailed issue list. # Changes from Maven 3.5.4 to 3.6.0 * There had been issues related to the project discoverytime which has been increased in previous version which influenced some of our users. This should have been fixed MNG-6311, MNG-6383 and MNG-6412. * The output in the reactor summary has been improved MNG-6391 cause it confused people. * There was an issue related to the classpath ordering MNG-6415 in Maven which can cause issues which has been fixed. See https://maven.apache.org/docs/3.6.0/release-notes.html for the detailed issue list.
2020-06-29mbedtls: Add KERN_ARND support.nia4-5/+89
Motivation: the default behaviour of reopening /dev/urandom repeatedly for every 128 bytes of entropy required is _exceedingly_ slow on NetBSD. Not helped is using fread(), which assumes a long-lived file and buffers excessively. This change makes the standard gen_entropy tool run in milliseconds instead of seconds when it generates 48K of randomness. Not only that, but sysctl is a lot more robust in e.g. chroots, resource limited processes, etc. Risk: On NetBSD, the security properties of the previous and current behaviour are identical. Upstreamed: https://github.com/ARMmbed/mbedtls/pull/3423 Bump PKGREVISION.
2020-06-29bootstrap: Overhaul Darwin version selection.jperkin1-15/+16
With the upcoming Big Sur release we can't assume that the major version will always be 10. Creating a combined major and minor version number also allows us to simplify and future-proof some tests. Should be no functional change.
2020-06-29Updated net/terraform, net/terraform-provider-awsadam1-1/+3
2020-06-29terraform-provider-aws: updated to 2.68.0adam2-7/+7
v2.68.0: FEATURES: New Data Source: aws_efs_access_points New Resource: aws_wafv2_web_acl_logging_configuration ENHANCEMENTS: data-soruce/aws_ami: Add arn attribute data-source/aws_customer_gateway: Add arn attribute data-source/aws_ebs_snapshot: Add arn attribute data-source/aws_vpc_endpoint: Add arn attribute data-source/aws_vpc_endpoint_service: Add arn attribute data-source/aws_vpn_gateway: Add arn attribute resource/aws_ami: Add arn attribute and plan-time validations to architecture, volume_type and virtualization_type arguments resource/aws_ami_copy: Add arn attribute resource/aws_ami_from_instance: Add arn attribute resource/aws_customer_gateway: Add arn attribute and plan-time validations for bgp_asn, ip_address, and type arguments resource/aws_default_network_acl: Add arn attribute and plan-time validations for ingress and egress configuration block arguments resource/aws_ebs_snapshot: Add arn attribute resource/aws_ebs_snapshot: Support resource import resource/aws_ebs_snapshot_copy: Add arn attribute resource/aws_ec2_traffic_mirror_session: Add arn attribute resource/aws_ecs_service: Support deployment_controller configuration block type argument value of EXTERNAL (support external deployments) resource/aws_ecs_task_definition: Add efs_volume_configuration configuration block authorization_config, transit_encryption, and transit_encryption_port arguments (support EFS Access Points and transit encryption) resource/aws_elasticsearch_domain: Ultrawarm can now be enabled without re-creating the resource resource/aws_glue_catalog_database: Add arn attribute resource/aws_iot_policy: Support resource import resource/aws_iot_topic_rule: Add error_action configuration block resource/aws_network_acl: Add arn attribute and plan-time validations for ingress and egress configuration block arguments resource/aws_placement_group: Add arn attribute resource/aws_ses_receipt_filter: Add arn attribute and plan-time validations for all arguments resource/aws_vpn_connection: Add arn attribute resource/aws_vpc_endpoint: Add arn attribute resource/aws_vpc_endpoint_service: Add arn attribute resource/aws_vpn_gateway: Add arn attribute BUG FIXES: resource/aws_batch_compute_environment: Ensure desired_vcpus is fully optional and wait for updates resource/aws_batch_compute_environment: Remove resource from Terraform state when not found instead of returning error resource/aws_cloudtrail: Properly configure single event_selector with no data_resource and read_write_type of ReadOnly or WriteOnly resource/aws_cloudtrail: Prevent InvalidEventSelectorsException error when removing all event_selector configuration resource/aws_default_route_table: Validate CIDR blocks for misalignment before attempting to create the route to ensure Terraform can read the information after EC2 API canonicalization resource/aws_default_route_table: Ensure empty string ("") validation in cidr_block and ipv6_cidr_block arguments continues to work for Terraform 0.11 support resource/aws_ecs_service: Add plan-time validation and prevent panics with empty type argument in ordered_placement_strategy configuration block resource/aws_ecs_task_definition: Prevent showing API ordering differences in container_definitions environment variables during update plans resource/aws_elasticsearch_domain: Ensure empty string ("") validation in ebs_options volume_type argument continues to work for Terraform 0.11 support resource/aws_iot_policy: Ensure name argument updates recreate the resource resource/aws_route: Validate CIDR blocks for misalignment before attempting to create the route to ensure Terraform can read the information after EC2 API canonicalization resource/aws_route: Ensure empty string ("") validation in destination_cidr_block and destination_ipv6_cidr_block arguments continues to work for Terraform 0.11 support resource/aws_route_table: Validate CIDR blocks for misalignment before attempting to create the route to ensure Terraform can read the information after EC2 API canonicalization resource/aws_route_table: Ensure empty string ("") validation in cidr_block and ipv6_cidr_block arguments continues to work for Terraform 0.11 support resource/aws_spot_fleet_request: Prevent crash with missing placement information resource/aws_vpc_endpoint: Skip ModifyVpcEndpoint API call on tags only updates resource/aws_vpc_endpoint: Wait for acceptance when auto_accept is enabled resource/aws_wafv2_web_acl: Prevent unexpected UpdateWebACL API errors on tags only updates
2020-06-29doc: Updated net/rclone to 1.52.2leot2-3/+3
2020-06-29rclone: Update to 1.52.2leot2-8/+7
Changes: 1.52.2 ------ * Bug Fixes * build * Fix docker release build action (Nick Craig-Wood) * Fix custom timezone in Docker image (NoLooseEnds) * check: Fix misleading message which printed errors instead of differences (Nick Craig-Wood) * errors: Add WSAECONNREFUSED and more to the list of retriable Windows errors (Nick Craig-Wood) * rcd: Fix incorrect prometheus metrics (Gary Kim) * serve restic: Fix flags so they use environment variables (Nick Craig-Wood) * serve webdav: Fix flags so they use environment variables (Nick Craig-Wood) * sync: Fix --track-renames-strategy modtime (Nick Craig-Wood) * Drive * Fix not being able to delete a directory with a trashed shortcut (Nick Craig-Wood) * Fix creating a directory inside a shortcut (Nick Craig-Wood) * Fix --drive-impersonate with cached root_folder_id (Nick Craig-Wood) * SFTP * Fix SSH key PEM loading (Zac Rubin) * Swift * Speed up deletes by not retrying segment container deletes (Nick Craig-Wood) * Tardigrade * Upgrade to uplink v1.1.1 (Caleb Case) * WebDAV * Fix free/used display for rclone about/df for certain backends (Nick Craig-Wood)
2020-06-29terraform: updated to 0.12.28adam2-8/+7
v0.12.28: BUG FIXES: build: build the 0.12 version of Terraform with Go 1.12.13, rather than 0.13 Terraform's 1.14.2 v0.12.27: BUG FIXES: backend/remote: fix panic when there's a connection error to the remote backend
2020-06-29doc: Updated biology/openbabel to 3.1.1ryoon1-1/+2
2020-06-29openbabel: Update to 3.1.1ryoon9-274/+244
* Depends on boost. If you have boost, cmake detects boost and it causes build failure. Changelog: 3.1.1 This version primarily reflects fixes for packaging on Linux and FreeBSD relative to 3.1.0. No features or significant bug fixes were involved. 3.1.0 This version represents additional API and is backwards-compatible with the 3.0 release. Significant features and fixes Fixed tautomer code (by timvdm #2171) New functionality: Support for periodic boundary conditions. See additional option -p for MMCIF format, and write option 'g' for CIF. (by bbucior, #1853) New functionality: Add distance geometry method (by n-yoshikawa, #1875, by timvdm #2158) Fixed crashes with new 3D coordinate generation (by timvdm #2149 and ghutchis #2150) New features and improvements New file format: Wiswesser Line Notation reader from Roger Sayle (by baoilleach, #2084) New option: Add the --neutralize operation to convert charged atoms to neutral (by baoilleach, #2109) Update GAS CONSTANT to 2018 CODATA recommended value (by e-kwsm, #2045) Support #0 in SMARTS so that asterisks can be matched (by baoilleach, #2079) Bring back support for lowercase elements and D/T in GetAtomicNum(). (by baoilleach, #2100) Change docstrings of add/delete hydrogens to better reflect their functionality (by baoilleach, #2110) Support kekulization of aromatic sulfoxides (by baoilleach, #2121) Enable casting to StereoBase in the Python bindings (by baoilleach, #2124) OBBuilder: Add error message for ring/rigid fragments with all zero coords. (by timvdm, #2149) R script updates (by khoran, #2145) Be more strict when parsing charges in SMILES (by baoilleach, #2132) Improve tools/obconformer.cpp (by e-kwsm, #2154) Bug fixes Fix CMake error with R and C# bindings (by ghutchis, #2051) Rename MAESTRO extensions from uppercase to lowercase (by baoilleach, #2053) Fix file format docstrings that were causing problems with Sphinx or GUI (by baoilleach, #2054) Fix BUILD_SHARED=OFF (by dkoes, #2056) Fix import of openbabel (by e-kwsm, #2058) Update for Open Babel 3 (by e-kwsm, #2060) Fix maeparser compile error with some Boost configs (by fredrikw, #2076) Find or build maeparser & coordgen libraries (by ricrogz, #2064) Fix issue #2095, caused by incorrect application of protonated SMARTS (by au1985, #2102) Fix issue #1794, UFF atom typing for deuterium (by ghutchis, #2114) Fix segfault on SMI to InChI conversion when using "-d" (by timvdm, #2115) Correct the path to the openbabel-python.cpp (by baoilleach, #2119) Remove fragments with zero coordinates - fixes #2144. (by ghutchis, #2150) Fix issue #2125 - Zero occupancy in cif file treated as 1.0. (by orex, #2136) Fix #2071 - obrms parser segmentation fault (by e-kwsm, #2073) Fix #2098 - OBDistanceGeometry is unavailable to users (by n-yoshikawa, #2105) Set MAEPARSER_BUILD_SHARED_LIBS (fix #2089) (by e-kwsm, #2155) Fix the import of Tkinter in Python 3+ (by mrakitin, #2157) Fix for segault (with regression test) (by dkoes, #2162) Follow-up with missing spelling fixes from #2163 (by mrakitin, #2166) Prefer std::fabs resolves build problem on mac-current (by ghutchis, #2168) Fix distance geometry stereo issues (by timvdm, #2158) Merge of "Improve OBConversion::WriteString() and WriteFile() initialization" (adalke) #1923 (by baoilleach, #2176) Fix output format in the cifformat writer (by afonari, #2170) Development/Build/Install improvements Avoid using namespace in headers (by e-kwsm, #2055) Remove babel doc (by e-kwsm, #2057) Do not hard-code Open Babel major version for include directory (by e-kwsm, #2059) Patched to build on NetBSD (by voidpin, #2093) Update download link (by njzjz, #2094) Fix GitHub ISSUE_TEMPLATE (by RMeli, #2082) Define OpenBabel3_LIBRARY (by dkoes, #2086) Initial GitHub action - misspell-fixer (by ghutchis, #2163) Automated GitHub builds (by ghutchis, #2165)
2020-06-29doc: Updated devel/nspr to 4.26ryoon1-1/+2
2020-06-29nspr: Update to 4.26ryoon2-7/+7
Changelog: NSPR 4.26 contains the following changes: - PR_GetSystemInfo supports a new flag PR_SI_RELEASE_BUILD to get information about the operating system build version. - Better support parallel building on Windows. - The internal release automatic script requires python 3.
2020-06-29bootstrap: Set some default variables.jperkin1-75/+8
Saves having to duplicate them for every OS, and also removes some obsolete settings, should be no functional change.
2020-06-29Correct sense of condition.nia2-4/+4
please supply one bottle of club mate to nia alarie, london