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2012-11-01Rename log to my_log to avoid conflict with libm.joerg2-1/+372
2012-11-01Fix C99 inline usage.joerg2-1/+19
2012-11-01Fix 64bit time_t issue. Fix inline usage. Bump revision.joerg3-8/+29
2012-11-01Add missing include and return value.joerg3-15/+39
2012-11-01Fix C99 inline usage.joerg2-1/+19
2012-11-01Apply some void love.joerg2-7/+42
2012-11-01Patch from Jan-Jaap van der Heijden for IRIXsjg1-2/+2
2012-11-01libedit in older NetBSD is too old. Use the readline package instead.mlelstv1-1/+6
2012-11-01Updated graphics/cairo to 1.12.6nb3wiz1-1/+2
2012-11-01Bring back previous patch in correct version to fix SHM part ofwiz7-12/+190
build on NetBSD-5 with native Xorg. Additionally, disable GL support since NetBSD-5's MesaLib is too old and, according to upstream, cairo-gl "is only really being experimented with currently by toy applications". Bump PKGREVISION. Tested by Andreas Gustafsson and David Brownlee.
2012-11-01Added biology/plinkseq version 0.08asau1-1/+2
2012-11-01+ plinkseqasau1-1/+2
2012-11-01Import PLINK/SEQ version 0.08 as biology/plinkseqasau4-0/+46
Packaged by Jason Bacon for pkgsrc-wip. PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing and genotyping projects, particularly whole-exome and whole-genome studies. It is independent of (but designed to be complementary to) the existing PLINK package.
2012-10-31Sort options and their descriptions.wiz1-16/+16
2012-10-31Fix xref, sort sections, use more markup, remove superfluous Pp.wiz1-10/+10
2012-10-31Updated emulators/yabause to 0.9.11.1nb9wiz1-1/+2
2012-10-31Put gtk and qt in a mutual-exclusive group, and switch to qt by default,wiz2-12/+13
since that's preferred by upstream. From diro@nixsyspaus.org in PR 47148. Bump PKGREVISION.
2012-10-31Update HOMEPAGE, from diro@nixsyspaus.org in PR 47148.wiz1-4/+3
2012-10-31Fix COMMENT, from diro@nixsyspaus.org in PR 47148.wiz1-2/+2
2012-10-31Update to the latest version in the rt3 train. Contains security updates:spz4-15/+16
3.8.15 Release Notes This release resolves a number of security vulnerabilities. It resolves CVE-2012-4730, CVE-2012-4732, CVE-2012-4734, CVE-2012-4735, and CVE-2012-4884. In addition to these security fixes, RT 3.8.15 contains support for partitioned PGP messages. 3.8.14 Release Notes This release contains two fixes related to the 3.8.12 security release. Access to search results URLs is now CSRF whitelisted, based on user feedback. An error in rt-email-dashboards has been corrected. 3.8.13 Release Notes This release contains an important bugfix over the 3.8.12 security release: * Fix sending email with the 'perl-script' mod_perl handler, by ensuring that STDIN was always on FD 0 before calling IPC::Open2. This failure showed as either SIGPIPE or abnormal exit codes when running sendmail. * Fix for "Undefined value assigned to typeglob" and "Bad file descriptor: core_output_filter" errors caused by the above change, by ensuring that both FD 0 and FD 1 are prevented from being claimed by Apache. This error only arose with the perfork MPM and mod_perl <= 2.0.4.
2012-10-31+ netatalk-3.0.1dholland1-1/+2
2012-10-31Markup to prevent "e.g." from being misinterpreted as the end of a sentence.apb2-10/+10
(Not bumping the version number for this.)
2012-10-31Add the ability for libkver to override all four of ostype, osrelease,apb8-52/+696
machine, and machine_arch. Add a helper script to simplify use of libkver. Set VERSION=0.7. An earlier version of this change was reviewed by seb@NetBSD.org.
2012-10-31Don't lie to pkgsrc: this is not a GNU configure script.wiz1-2/+3
2012-10-31Updated graphics/cairo to 1.12.6nb2wiz1-1/+2
2012-10-31Remove previous two patches again, since they make cairo fail on NetBSD-6.wiz4-162/+6
Reported by abs. Bump PKGREVISION.
2012-10-31Add two build dependencies needed for creating the *.8 man pages.wiz1-1/+4
2012-10-31Drop superfluous PKG_DESTDIR_SUPPORT, "user-destdir" is default these days.asau1461-3969/+1463
2012-10-31Updated parallel/openmpi to 1.6.3asau1-1/+2
2012-10-31Update to OpenMPI 1.6.3asau2-6/+6
Version 1.6.3 is a minor bugfix release. All users are encouraged to upgrade to v1.6.3 when possible. Note that v1.6.3 is ABI compatible with the entire v1.5.x and v1.6.x series, but is not ABI compatible with the v1.4.x series. See http://www.open-mpi.org/software/ompi/versions/ for a description of Open MPI's release methodology. Here is a list of changes in v1.6.3 as compared to v1.6.2: - Fix mpirun --launch-agent behavior when a prefix is specified. Thanks to Reuti for identifying the issue. - Fixed memchecker configury. - Brought over some compiler warning squashes from the development trunk. - Fix spawning from a singleton to multiple hosts when the "add-host" MPI_Info key is used. Thanks to Brian Budge for pointing out the problem. - Add Mellanox ConnextIB IDs and max inline value. - Fix rankfile when no -np is given. - FreeBSD detection improvement. Thanks to Brooks Davis for the patch. - Removed TCP warnings on Windows. - Improved collective algorithm selection for very large messages. - Fix PSM MTL affinity settings. - Fix issue with MPI_OP_COMMUTATIVE in the mpif.h bindings. Thanks to Ake Sandgren for providing a patch to fix the issue. - Fix issue with MPI_SIZEOF when using CHARACTER and LOGICAL types in the mpi module. Thanks to Ake Sandgren for providing a patch to fix the issue.
2012-10-31Respect user settings of not using builtin termcap/curses.asau1-2/+2
2012-10-31Add closing "]".asau1-2/+2
2012-10-30Ignore subversion if detected (don't install experimental tool nmap-update)pettai1-2/+4
2012-10-30Add more patches from upstream to get further in build on NetBSD-5.wiz3-4/+160
2012-10-30Note update of editors/vim-*morr1-1/+5
2012-10-30Update to patchlevel 712.morr9-1917/+56
Changes: 7.3.654 creating Vim dictionary from Python an empty key might be used 7.3.655 64 bit MingW xpm .a file is missing 7.3.656 internal error in :pyeval 7.3.657 Python bindings silently truncate string values containing NUL 7.3.658 NUL bytes truncate strings when converted from Python 7.3.659 recent Python changes are not tested 7.3.660 ":help !" jumps to help for ":!" 7.3.661 (after 7.3.652) SEGV in Python code 7.3.662 can't build Ruby interface with Ruby 1.9.3 7.3.663 end of color scheme name not clear in E185 7.3.664 buffer overflow in unescaping multi-byte characters 7.3.665 MSVC 11 is not supported 7.3.666 Win32.mak can't be found 7.3.667 unused variables in Perl interface 7.3.668 loading Perl dynamically still uses static library 7.3.669 when building with Cygwin loading Python dynamically fails 7.3.670 tiny memory leak when throwing exception in Python 7.3.671 more Python code can be shared between Python 2 and 3 7.3.672 not possible to lock/unlock lists in Python interface 7.3.673 "gN" while 'selection' is "exclusive" misses one character 7.3.674 can't compile with Lua/dyn on Cygwin 7.3.675 accessing uninitialized memory with a very long file name 7.3.676 Ruby compilation on Windows 32 bit doesn't work 7.3.677 buf_spname() is used inconsistently 7.3.678 Ruby .so name may not be correct 7.3.679 Ruby detection uses Config, newer Ruby versions use RbConfig 7.3.680 some files missing in the list of distributed files 7.3.681 list of distributed files picks up backup files 7.3.682 (after 7.3.677) compiler complains about incompatible types 7.3.683 ":python" may crash when vimbindeval() returns None 7.3.684 "make test" does not delete lua.vim 7.3.685 no test for what patch 7.3.673 fixes 7.3.686 cannot use CTRL-\ e mapping when entering an expression 7.3.687 test 16 fails when $DISPLAY is not set 7.3.688 Python 3.3 is not supported 7.3.689 MzScheme and Lua may use a NULL string 7.3.690 crash with directory name equal to maximum path length 7.3.691 state specific to the Python thread is discarded 7.3.692 can't build GTK version with GTK 2.0 7.3.693 can't make 'softtabstop' follow 'shiftwidth' 7.3.694 'shiftwidth' is not so easy to use in indent files 7.3.695 balloon cannot show multi-byte text 7.3.696 message about added spell language can be wrong 7.3.697 leaking resources when setting GUI font 7.3.698 Python 3 does not preserve state beween commands 7.3.699 manually set 'ttymouse' is overruled by automatic detection 7.3.700 cannot detect URXVT and SGR mouse support 7.3.701 MS-Windows: Crash with stack overflow when setting 'encoding' 7.3.702 nmake from VS6 service pack 6 is not recognized 7.3.703 when 'undofile' is reset the hash is computed unnecessarily 7.3.704 repeating "cgn" does not always work correctly 7.3.705 mouse features are not in alphabetical order 7.3.706 (after 7.3.697) can't build Motif version 7.3.707 (after 7.3.701) library name with non-latin characters fails 7.3.708 filler lines above the first line may be hidden 7.3.709 compiler warning for unused argument 7.3.710 (after 7.3.704) "fn" is broken 7.3.711 (after 7.3.688) vim.current.buffer is not available 7.3.712 nmake from VS2010 SP1 is not recognized pkgsrc changes: - take maintainership of package - switch to single tarball, created from vim's hg, instead of downloading > 700 files - which resulted in changes in PLIST in vim-share - some minor changes to DESCR files (add more vim guis) - reset PKGREVISION on vim-gtk2 - add new files to vim-lang
2012-10-30Note that gnuradio works with swig 2.gdt1-1/+2
2012-10-30Updated mail/exim to 4.80.1abs1-1/+2
2012-10-30Updated misc/vttest to 20120506shattered2-3/+3
2012-10-30Update to vttest-20120506; 7 years worth of changes omitted.shattered2-6/+6
2012-10-30Note update of devel/RTFMmorr1-1/+2
2012-10-30Update to RTFM 2.4.5.morr2-6/+6
It contains security fix for bug, which can be exploited by malicious users to bypass certain security restrictions (CVE-2012-4731).
2012-10-30mention updatedrochner2-3/+3
2012-10-30+rhythmbox-gtk3drochner1-1/+2
2012-10-30add a pkg for rhythmbox-2.98 which is based on gobject-introspectiondrochner4-0/+838
instead of py-gtk still somewhat minimalistic, but plays files and streams for me
2012-10-30Updated mail/exim to 4.80.1abs2-7/+6
Exim version 4.80.1 ------------------- PP/01 SECURITY: protect DKIM DNS decoding from remote exploit. CVE-2012-5671 This, or similar/improved, will also be change PP/11 of 4.81. See: https://secunia.com/advisories/51098/
2012-10-30update to 3.4.3drochner4-13/+13
this switches to the current stable release branch (source and binary compatible afaict)
2012-10-30allow PKG_CONFIG_PATH to be set by the pkg, neededdrochner1-2/+2
for gobject-introspection users
2012-10-30Documentation suitable for yelp requires itstool to build.prlw11-1/+3
2012-10-30Updated games/onscripter to 20121029tsutsui1-1/+2
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