pkgsrc - [no description]

Age	Commit message (Collapse)	Author	Files	Lines
2021-10-26	biology: Replace RMD160 checksums with BLAKE2s checksums	nia	1	-2/+2
	All checksums have been double-checked against existing RMD160 and SHA512 hashes
2021-10-07	biology: Remove SHA1 hashes for distfiles	nia	1	-2/+1

2021-05-24	*: recursive bump for perl 5.34	wiz	1	-2/+2

2020-08-31	*: bump PKGREVISION for perl-5.32.	wiz	1	-2/+2

2020-01-26	all: migrate some SourceForge homepage URLs back from https to http	rillig	1	-2/+2
	https://mail-index.netbsd.org/pkgsrc-changes/2020/01/18/msg205146.html In the above commit, the homepage URLs were migrated from http to https, assuming that SourceForge would use the same host names for both http and https connections. This assumption was wrong. Their documentation at https://sourceforge.net/p/forge/documentation/Custom%20VHOSTs/ states that the https URLs use the domain sourceforge.io instead. To make the homepages from the above commit reachable again, pkglint has been extended to check for reachable homepages. This check is only enabled when the --network command line option is given. Each of the homepages that referred to https://$project.sourceforge.net before was migrated to https://$project.sourceforge.io (27), and if that was not reachable, to the fallback URL http://$project.sourceforge.net (163).
2020-01-18	all: migrate several HOMEPAGEs to https	rillig	1	-2/+2
	pkglint --only "https instead of http" -r -F With manual adjustments afterwards since pkglint 19.4.4 fixed a few indentations in unrelated lines. This mainly affects projects hosted at SourceForce, as well as freedesktop.org, CTAN and GNU.
2019-11-02	biology: align variable assignments	rillig	1	-2/+2
	pkglint -Wall -F --only aligned --only indent -r
2019-08-11	Bump PKGREVISIONs for perl 5.30.0	wiz	1	-2/+2

2018-08-22	Recursive bump for perl5-5.28.0	wiz	1	-2/+2

2017-12-27	Re-add patch to bring timeval definition and select prototype into scope.	he	3	-2/+19
	Bump PKGREVISION.
2017-12-17	biology/bwa: Update to 0.7.17	bacon	4	-34/+39
	Numerous bug fixes, enhancements, and new command-line options ok wiz@
2017-02-14	Add missing include.	joerg	2	-1/+14

2016-07-09	Bump PKGREVISION for perl-5.24.0 for everything mentioning perl.	wiz	1	-2/+2

2015-12-12	Fix int types and network libs on SunOS	wiedi	3	-2/+31

2015-11-07	Unconditionally uses <emmintrin.h>, so restrict to x86.	dholland	1	-4/+4

2015-11-02	Add SHA512 digests for distfiles for biology category.	agc	1	-1/+2
	Existing SHA1 digests verified, all found to be the same on the machine holding the existing distfiles (morden). Existing SHA1 digests retained for now as an audit trail.
2015-10-14	Import biology/bwa as bwa-0.7.9a.	leot	4	-0/+40
	Packaged in pkgsrc-wip by Jason Bacon. BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome.