pkgsrc - [no description]

Age	Commit message (Collapse)	Author	Files	Lines
2017-01-19	Convert all occurrences (353 by my count) of	agc	1	-4/+4
	MASTER_SITES= site1 \ site2 style continuation lines to be simple repeated MASTER_SITES+= site1 MASTER_SITES+= site2 lines. As previewed on tech-pkg. With thanks to rillig for fixing pkglint accordingly.
2015-11-02	Add SHA512 digests for distfiles for biology category.	agc	1	-1/+2
	Existing SHA1 digests verified, all found to be the same on the machine holding the existing distfiles (morden). Existing SHA1 digests retained for now as an audit trail.
2014-10-09	Remove pkgviews: don't set PKG_INSTALLATION_TYPES in Makefiles.	wiz	1	-3/+1

2013-07-21	Update to 3.0	wen	4	-79/+40
	Add LICENSE Add more distfile mirrors Upstream changelog please visit: http://selab.janelia.org/software/hmmer3/3.0/RELEASE-NOTES
2012-09-11	"user-destdir" is default these days	asau	1	-2/+1

2009-07-16	Fix patch-aa sum.	joerg	1	-2/+2

2009-07-08	user-destdir support	joerg	2	-9/+14

2009-05-16	fetch from gentoo mirror.	zafer	1	-2/+2

2009-05-16	update homepage and master site. new master needs active ftp. it doesn't ↵	zafer	1	-3/+3
	work with EPSV. commented out.
2007-02-22	Whitespace cleanup, courtesy of pkglint.	wiz	1	-2/+2
	Patch provided by Sergey Svishchev in private mail.
2005-12-05	Fixed pkglint warnings. The warnings are mostly quoting issues, for	rillig	1	-2/+2
	example MAKE_ENV+=FOO=${BAR} is changed to MAKE_ENV+=FOO=${BAR:Q}. Some other changes are outlined in http://mail-index.netbsd.org/tech-pkg/2005/12/02/0034.html
2005-05-23	Removed trailing white-space.	rillig	1	-5/+5

2005-04-11	Remove USE_BUILDLINK3 and NO_BUILDLINK; these are no longer used.	tv	1	-2/+1

2005-02-22	Add RMD160 digests in addition to the SHA1 ones.	agc	1	-1/+2

2004-12-01	Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483.	minskim	2	-7/+8
	While here, enable pkgviews installation. Changes: -:- hmmsearch intermittently failed on Swissprot searches, on some platforms (reports on AMD/Linux; Mac OS/X). (#h25) -:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT, and could explode to very large allocations when searching with large sequences. (#h26) -:- technical improvements in handing dsq's (digitized sequences); "bug" has no visible effects, except when compiling on different platforms. (#h27) -:- typo fix in P7Forward() recursion; typo may have had minor effect on calculated scores. (#h28) -:- hmmalign now includes --outformat and --oneline option for specifying different output alignment formats than the default Stockholm.
2004-08-23	Remove unnecessary -p following MKDIR commands.	ben	2	-6/+6

2004-08-16	Make hmmer honor $MKDIR for cross-platform install.	ben	3	-10/+44
	Addresses pr#26650 from Georg Schwarz.
2004-04-11	Convert to buildlink3 and correct a spelling error in DESCR.	snj	2	-3/+3

2004-01-20	Move WRKSRC definition away from the first paragraph in a Makefile.	agc	1	-2/+2

2003-09-26	Add trailing slash to HOMEPAGE to placate pkglint.	wiz	1	-2/+2

2003-09-26	Initial import of hmmer, one of the many packages provided by	jschauma	5	-0/+74
	brook at biology dot nmsu dot edu and his team at NMSU. HMMER is an implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries. HMMER takes multiple sequence alignement as input and builds statistical model called "Hidden Markov Model" which can be used as a query into a sequence database to find and/or align additional homologues of the sequence family.