pkgsrc - [no description]

Age	Commit message (Collapse)	Author	Files	Lines
2015-11-02	Add SHA512 digests for distfiles for biology category.	agc	1	-1/+2
	Existing SHA1 digests verified, all found to be the same on the machine holding the existing distfiles (morden). Existing SHA1 digests retained for now as an audit trail.
2012-09-11	"user-destdir" is default these days	asau	1	-3/+1

2008-03-03	Mechanical changes to add full DESTDIR support to packages that install	jlam	1	-4/+6
	their files via a custom do-install target.
2007-02-22	Whitespace cleanup, courtesy of pkglint.	wiz	1	-2/+2
	Patch provided by Sergey Svishchev in private mail.
2005-06-16	Create directories before installing files into them.	jlam	1	-1/+2

2005-05-23	Removed trailing white-space.	rillig	1	-11/+11

2005-02-22	Add RMD160 digests in addition to the SHA1 ones.	agc	1	-1/+2

2004-01-20	Move WRKSRC definition away from the first paragraph in a Makefile.	agc	1	-2/+3

2003-09-26	Rats. Re-import ``align'' as ``pdbalign'', as that's the package's name.	jschauma	8	-0/+117
	Given a GCG multiple sequence alignment file (a GCG MSF file), which a includes a sequence of known structure, the program pdbalign maps the sequence variability onto the known structure. The central premise is of course, that for a closely related family of proteins (sequence ID > 40%) the 3-D structures will not be significantly different.pdbdist calculates the distance from each atom in the pdb file to each atom in the ligand and records the minimum in the temperature field for that atom record.distalign reads the output from pdbdist and also the original GCG MSF file and produces an MSF file annotated with a measure of sequence variability and the distance of the residue at that position (of the sequence of known structure) from the ligand.