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2021-03-31py-cutadapt: updated to 3.4adam2-7/+7
v3.4 (2021-03-30) ----------------- * :issue:`481`: An experimental single-file Windows executable of Cutadapt is `available for download on the GitHub "releases" page <https://github.com/marcelm/cutadapt/releases>`_. * :issue:`517`: Report correct sequence in info file if read was reverse complemented * :issue:`517`: Added a column to the info file that shows whether the read was reverse-complemented (if ``--revcomp`` was used) * :issue:`320`: Fix (again) "Too many open files" when demultiplexing
2021-03-08py-cutadapt: updated to 3.3adam2-7/+7
v3.3: * :issue:`504`: Fix a crash on Windows. * :issue:`490`: When ``--rename`` is used with ``--revcomp``, disable adding the ``rc`` suffix to reads that were reverse-complemented. * Also, there is now a ``{rc}` template variable for the ``--rename`` option, which is replaced with "rc" if the read was reverse-complemented (and the empty string if not). * :issue:`512`: Fix issue :issue:`128` once more (the “Reads written” figure in the report incorrectly included both trimmed and untrimmed reads if ``--untrimmed-output`` was used). * :issue:`515`: The report is now send to stderr if any output file is written to stdout
2021-02-11py-cutadapt: fix CATEGORY, mark as not for 2.7 and 3.6, use ALTERNATIVESadam3-6/+11
2021-02-08biology/py-cutadapt: import py38-cutadapt-3.2bacon4-0/+76
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.