summaryrefslogtreecommitdiff
path: root/biology/py-mol
AgeCommit message (Collapse)AuthorFilesLines
2020-10-12math/blas, math/lapack: Install interchangeable BLAS systembacon1-2/+2
Install the new interchangeable BLAS system created by Thomas Orgis, currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and Apple's Accelerate.framework. This system allows the user to select any BLAS implementation without modifying packages or using package options, by setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details. This commit should not alter behavior of existing packages as the system defaults to Netlib BLAS/LAPACK, which until now has been the only supported implementation. Details: Add new mk/blas.buildlink3.mk for inclusion in dependent packages Install compatible Netlib math/blas and math/lapack packages Update math/blas and math/lapack MAINTAINER approved by adam@ OpenBLAS, cblas, and lapacke will follow in separate commits Update direct dependents to use mk/blas.buildlink3.mk Perform recursive revbump
2020-04-27py-mol: use buildlink for py-numpyadam1-3/+2
2020-03-08*: recursive bump for libffiwiz1-2/+2
2019-09-02Changed PYTHON_VERSIONS_INCOMPATIBLE to PYTHON_VERSIONS_ACCEPTED; needed for ↵adam1-2/+2
future Python 3.8
2019-08-30Switch packages using GLUT to FreeGLUT.nia1-3/+3
Start building FreeGLUT with GLUT compatibility on. - GLUT's maintainance state is much worse than FreeGLUT's, with no substanital commits since 2011. - GLUT can no longer be consider a core component of Mesa or X11. - Nobody except us seems to be using it... Other vendors still shipping GLUT: - GoboLinux, T2 SDE, PLD Linux Revbump packages using GLUT or freeglut by default.
2019-05-29Revbump after updating graphics/glewadam1-2/+2
2019-04-26fix some whitespace, mostly introduced in the previousmaya1-2/+2
python 3.4 / 3.5 removal commit.
2019-04-26Omit mentions of python 34 and 35, after those were removed.maya1-2/+2
- Includes some whitespace changes, to be handled in a separate commit.
2018-07-03extend PYTHON_VERSIONS_ for Python 3.7adam1-2/+2
2017-01-01Add python-3.6 to incompatible versions.wiz1-2/+2
2016-08-28Remove unnecessary PLIST_SUBST and FILES_SUBST that are now providedwiz1-3/+1
by the infrastructure. Mark a couple more packages as not ready for python-3.x.
2016-07-09Remove python33: adapt all packages that refer to it.wiz1-2/+2
2015-12-05Extend PYTHON_VERSIONS_INCOMPATIBLE to 35adam1-2/+2
2015-11-02Add SHA512 digests for distfiles for biology category.agc1-1/+2
Existing SHA1 digests verified, all found to be the same on the machine holding the existing distfiles (morden). Existing SHA1 digests retained for now as an audit trail.
2015-04-25Recursive revbump following MesaLib update, categories a through f.tnn1-2/+2
2014-05-09Mark packages that are not ready for python-3.3 also not ready for 3.4,wiz1-2/+2
until proven otherwise.
2014-02-17Add standard comment to not-ready-for-python line.wiz1-2/+2
2014-02-17Mark as not ready for python-3.x.wiz2-9/+11
While here, slightly clean up Makefile and fix conflict with itself by adding ${PYVERSSUFFIX} to pymol binary. Bump PKGREVISION.
2014-01-18Convert to versioned_dependencies.mk for Pmw.wiz1-2/+4
2013-06-04Try to fix the fallout caused by the fix for PR pkg/47882. Part 3:tron1-2/+2
Recursively bump package revisions again after the "freetype2" and "fontconfig" handling was fixed.
2013-06-03Bump freetype2 and fontconfig dependencies to current pkgsrc versions,wiz1-1/+2
to address issues with NetBSD-6(and earlier)'s fontconfig not being new enough for pango. While doing that, also bump freetype2 dependency to current pkgsrc version. Suggested by tron in PR 47882
2013-05-09Make the gross hack even more gross to ensure the destdir installationjoerg1-3/+3
works.
2013-04-14Update to pymol 1.5.0.1:joerg3-9/+38
- bug fixes - improvements to performance and render quality
2013-02-16Recursive bump for png-1.6.wiz1-2/+2
2012-10-04Bump revision for packages with changed CONFLICTS (PYTHON_SELF_CONFLICT)cheusov1-2/+2
2012-10-03CONFLICTS between python modulescheusov1-2/+3
2012-09-11"user-destdir" is default these daysasau1-3/+1
2012-04-08All supported python versions in pkgsrc support eggs, so removewiz1-2/+2
${PLIST.eggfile} from PLISTs and support code from lang/python.
2012-04-08Remove python24 and all traces of it from pkgsrc.wiz1-3/+1
Remove devel/py-ctypes (only needed by and supporting python24). Remove PYTHON_VERSIONS_ACCEPTED and PYTHON_VERSIONS_INCOMPATIBLE lines that just mirror defaults now. Miscellaneous cleanup while editing all these files.
2012-02-07Add csh scripts to REPLACE_CSH and add USE_TOOLS+=csh:runsbd1-2/+5
Bump PKGREVISION
2011-11-01Recursive bump for graphics/freetype2 buildlink addition.sbd1-1/+2
2011-10-28python24 is not acceptable.obache1-1/+3
2011-10-27Update py-mol to 1.4.1.obache3-39/+238
many improvements and bug fixes.
2011-01-13png shlib name changed for png>=1.5.0, so bump PKGREVISIONs.wiz1-2/+2
2010-06-13Bump PKGREVISION for libpng shlib name change.wiz1-2/+4
Also add some patches to remove use of deprecated symbols and fix other problems when looking for or compiling against libpng-1.4.x.
2009-07-08user-destdir supportjoerg1-3/+6
2009-06-14Remove @dirrm entries from PLISTsjoerg1-44/+1
2009-03-05Remove PYBINMODULE. All it did was mark some packages as not availablejoerg1-2/+1
on some platforms that lacked shared library support in the past. The list hasn't been maintained at all and the gain is very limited, so just get rid of it.
2008-04-25Update PYTHON_VERSIONS_COMPATIBLEjoerg1-2/+1
- assume that Python 2.4 and 2.5 are compatible and allow checking for fallout. - remove PYTHON_VERSIONS_COMPATIBLE that are obsoleted by the 2.3+ default. Modify the others to deal with the removals.
2007-08-12Reimport biology/pymol as py-mol, and change its PKGNAME to follow thewiz4-0/+834
python-in-pkgsrc standards. Add conflict with old pkgname. Keep PKGREVISION even though the package has a new name to confuse the users less.