Age | Commit message (Collapse) | Author | Files | Lines | |
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2020-03-26 | Fix portability | joerg | 2 | -1/+15 | |
2019-05-11 | biology/vsearch: Upgrade to 2.13.4 | bacon | 7 | -99/+10 | |
pkgsrc patches incorporated into upstream release | |||||
2019-05-10 | biology/vsearch: import vsearch-2.13.3 | bacon | 8 | -0/+173 | |
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads. The aim of this project is to create an alternative to the USEARCH tool developed by Robert C. Edgar (2010). |