summaryrefslogtreecommitdiff
path: root/biology/vsearch
AgeCommit message (Collapse)AuthorFilesLines
2020-03-26Fix portabilityjoerg2-1/+15
2019-05-11biology/vsearch: Upgrade to 2.13.4bacon7-99/+10
pkgsrc patches incorporated into upstream release
2019-05-10biology/vsearch: import vsearch-2.13.3bacon8-0/+173
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads. The aim of this project is to create an alternative to the USEARCH tool developed by Robert C. Edgar (2010).