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2014-06-02DB_File was first released with perl 5obache1-2/+2
2014-06-02perl>=5.19.6 contains Module::Build>0.42obache1-5/+5
perl>=5.10.1 contains ExtUtils::Manifest>=1.52 perl>=5.8.1 contains Storable>=2.05
2014-05-29Bump for perl-5.20.0.wiz7-12/+14
Do it for all packages that * mention perl, or * have a directory name starting with p5-*, or * depend on a package starting with p5- like last time, for 5.18, where this didn't lead to complaints. Let me know if you have any this time.
2014-05-09Mark packages that are not ready for python-3.3 also not ready for 3.4,wiz1-2/+2
until proven otherwise.
2014-05-05Recursive revbump from x11/pixmanryoon3-5/+6
Fix PR pkg/48777
2014-04-17__BSD_VISIBLE is needed on FreeBSD for PF_INET.asau2-5/+19
2014-04-07SunOS has rpc/xdr.h and builds xtcformat.so too.fhajny1-0/+2
2014-02-20Update biology/bioperl to 1.6.923.fhajny6-133/+153
Way too many changes (0.7.0 was released in 2001!). See changelog at: https://github.com/bioperl/bioperl-live/blob/master/Changes
2014-02-20Add p5-Bio-ASN1-EntrezGenefhajny1-1/+2
2014-02-20Import biology/p5-Bio-ASN1-EntrezGene.fhajny3-0/+25
Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez Gene genome databases (http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It parses an ASN.1-formatted Entrez Gene record and returns a data structure that contains all data items from the gene record.
2014-02-17Add standard comment to not-ready-for-python line.wiz1-2/+2
2014-02-17Mark as not ready for python-3.x.wiz2-9/+11
While here, slightly clean up Makefile and fix conflict with itself by adding ${PYVERSSUFFIX} to pymol binary. Bump PKGREVISION.
2014-02-08fix build on SunOSwiedi7-2/+140
2014-01-18Convert to versioned_dependencies.mk for Pmw.wiz1-2/+4
2014-01-01Recursive PKGREVISION bump for libgcrypt-1.6.0 shlib major bump.wiz1-2/+2
2013-12-10Add socket libraries on SunOS. Patch from Sebastian Wiedenroth.jperkin1-1/+6
2013-11-29Fix extraction of rpath options from Fortran linker.joerg2-8/+40
2013-10-30Update to chemtool 1.6.14asau2-7/+6
Fixes and enhancements in chemtool 1.6.14 - Updated configure script to support ARM64. - Fixed potential crash during EPS output. - Fixed detection of openbabel 2.3.x
2013-10-10Recursive revbump from pango-1.36.0ryoon3-6/+6
2013-10-09Use CMake builtin variable for mandir.obache3-6/+5
2013-09-02Revbump after cairo updateadam3-6/+6
2013-07-21Update to 3.0wen4-79/+40
Add LICENSE Add more distfile mirrors Upstream changelog please visit: http://selab.janelia.org/software/hmmer3/3.0/RELEASE-NOTES
2013-07-03Revbump from devel/libexecinfo/builtin.mk.ryoon1-2/+2
2013-06-06Bump PKGREVISION for libXft changes for NetBSD native X support onwiz3-6/+6
NetBSD 6, requested by tron.
2013-06-04Try to fix the fallout caused by the fix for PR pkg/47882. Part 3:tron4-8/+8
Recursively bump package revisions again after the "freetype2" and "fontconfig" handling was fixed.
2013-06-03Bump freetype2 and fontconfig dependencies to current pkgsrc versions,wiz4-7/+8
to address issues with NetBSD-6(and earlier)'s fontconfig not being new enough for pango. While doing that, also bump freetype2 dependency to current pkgsrc version. Suggested by tron in PR 47882
2013-05-31Bump all packages for perl-5.18, thatwiz6-11/+12
a) refer 'perl' in their Makefile, or b) have a directory name of p5-*, or c) have any dependency on any p5-* package Like last time, where this caused no complaints.
2013-05-09Make the gross hack even more gross to ensure the destdir installationjoerg1-3/+3
works.
2013-05-09Fix missing include. Don't use libstdc++ implementation detail.joerg5-3/+44
Free correct variable. Bump revision.
2013-05-06When using C++11 or libc++, prefer <memory> and <unordered_map> withoutjoerg4-1/+74
the tr1 namespace.
2013-04-29Add a number of includes hidden by libstdc++'s name space pollution.joerg2-1/+14
2013-04-14Update to pymol 1.5.0.1:joerg3-9/+38
- bug fixes - improvements to performance and render quality
2013-04-08Revert pkglint-induced nonsense.asau1-22/+26
2013-04-07Edited DESCR in the case of:rodent1-26/+22
File too long (should be no more than 24 lines). Line too long (should be no more than 80 characters). Trailing empty lines. Trailing white-space. Trucated the long files as best as possible while preserving the most info contained in them.
2013-04-06Various MASTER_SITES-related fixes.rodent1-2/+2
2013-04-06".for variable names should not contain uppercase letters"rodent3-11/+11
2013-04-01Leave a note about Tk dependency so that the story doesn't repeat.asau1-1/+4
Skip interpreter check for tkmolrender.
2013-04-01Revert. It doesn't require Tk to be functional.asau1-2/+2
2013-04-01Mark as not MAKE_JOBS safe.sbd1-1/+2
2013-04-01Add PLIST.Linux with extra file.sbd2-2/+4
Bump PKGREVISION.
2013-04-01Use PKGMANDIRsbd3-5/+6
2013-04-01Uses wish at runtime.sbd1-2/+2
2013-04-01Skip the interpreter ckeck on the demo script.sbd1-1/+3
2013-04-01Use host_alias for file paths (as it doesn't contain '-gnu').sbd2-8/+29
2013-03-26Fix build against newer protocol buffers library.asau3-1/+80
Regenerate source from missing protocol description fetched from: https://bitbucket.org/statgen/plinkseq/raw/976c492c6e11e81aa798e2c4c20bcf17ea4073a1/lib/variant.proto https://bitbucket.org/statgen/plinkseq/raw/976c492c6e11e81aa798e2c4c20bcf17ea4073a1/lib/pp.proto Bump PKGREVISION.
2013-03-16+ mpqcasau1-1/+2
2013-03-16Import MPQC 2.3.1 as biology/mpqcasau8-0/+308
MPQC is the Massively Parallel Quantum Chemistry Program. It computes properties of atoms and molecules from first principles using the time independent Schroedinger equation. It runs on a wide range of architectures ranging from single many-core computers to massively parallel computers. Its design is object oriented, using the C++ programming language. Capabilities * Closed shell, unrestricted and general restricted open shell Hartree-Fock energies and gradients * Closed shell, unrestricted and general restricted open shell density functional theory energies and gradients * Second order open shell perturbation theory (OPT2[2]) and Z-averaged perturbation theory (ZAPT2) energies. * Second order closed shell Moller-Plesset perturbation theory energies and gradients. * Second order Moller-Plesset perturbation theory including an R12/F12 correlation factor. Energies of closed- and open-shell systems are supported. * Explicitly-correlated R12/F12 coupled-cluster methods via interface to Psi3 code and via native (experimental) implementation. * Explicitly-correlated multireference methods (MRCI, CASPT2) via interfaces to GAMESS and MOLCAS codes. * Robust internal coordinate geometry optimizer that efficiently optimizes molecules with many degrees of freedom. Nearly arbitrary internal coordinate constraints can be handled.
2013-02-16Recursive bump for png-1.6.wiz4-8/+8
2013-01-26Revbump after graphics/jpeg and textproc/icuadam1-2/+2
2013-01-19Add missing buildlink3s implied by openmotif but not lesstif.riastradh1-2/+4
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