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path:
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biology
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Commit message (
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Author
Files
Lines
2021-02-08
biology/Makefile: Add py-cutadapt
bacon
1
-1
/
+2
2021-02-08
biology/py-cutadapt: import py38-cutadapt-3.2
bacon
4
-0
/
+76
2021-02-08
biology/Makefile: Add py-dnaio
bacon
1
-1
/
+2
2021-02-08
biology/py-dnaio: import py38-dnaio-0.5.0
bacon
4
-0
/
+51
2021-02-08
biology/bedtools: Update to 2.30.0
bacon
7
-20
/
+76
2021-01-22
biology/Makefile: Add bedtools
bacon
1
-1
/
+2
2021-01-22
biology/bedtools: import bedtools-2.29.2
bacon
6
-0
/
+159
2021-01-21
biology/Makefile: Add bowtie2
bacon
1
-1
/
+2
2021-01-21
biology/bowtie2: import bowtie2-2.4.2
bacon
6
-0
/
+131
2021-01-20
biology/Makefile: Add fastqc
bacon
1
-1
/
+2
2021-01-20
biology/fastqc: import fastqc-0.11.9
bacon
4
-0
/
+301
2021-01-01
*: Recursive revbump from boost-1.75.0
ryoon
6
-8
/
+12
2020-12-18
Add biology/molsketch
pin
1
-1
/
+2
2020-12-18
biology/molsketch: import version 0.7.0
pin
4
-0
/
+184
2020-12-04
Revbump packages with a runtime Python dep but no version prefix.
nia
5
-10
/
+10
2020-11-05
*: Recursive revbump from textproc/icu-68.1
ryoon
4
-8
/
+8
2020-11-05
*: Recursive revbump from textproc/icu-68.1
ryoon
2
-4
/
+4
2020-11-04
openbabel: do not download dependencies during build
bsiegert
4
-41
/
+43
2020-11-03
New package, coordgenlibs-1.4.2.
bsiegert
6
-1
/
+76
2020-11-03
New package, maeparser-1.4.2.
bsiegert
6
-1
/
+60
2020-11-01
(biology/openbabel) Regen PLIST
mef
1
-2
/
+2
2020-10-12
math/blas, math/lapack: Install interchangeable BLAS system
bacon
4
-10
/
+10
2020-09-25
gnome-chemistry-utils: fix builds
gutteridge
1
-2
/
+5
2020-09-06
bioperl: update to 1.7.7.
wiz
3
-26
/
+13
2020-09-06
p5-Bio-ASN1-EntrezGene: update to 1.73.
wiz
2
-9
/
+9
2020-08-31
*: bump PKGREVISION for perl-5.32.
wiz
16
-30
/
+32
2020-08-17
*: revbump after fontconfig bl3 changes (libuuid removal)
leot
5
-8
/
+10
2020-08-10
biology/R-popbio: import R-popbio-2.7
brook
4
-1
/
+26
2020-07-30
kallisto: remove patches that were removed from distinfo during update
wiz
2
-58
/
+0
2020-07-27
biology/bcftools: Upgrade to 1.10.2
bacon
6
-36
/
+157
2020-07-26
biology/samtools: Upgrade to 1.10
bacon
4
-20
/
+119
2020-07-23
biology/kallisto: Upgrade to 0.46.1
bacon
3
-18
/
+15
2020-07-22
bioloty/htslib: Correct bl2 (ABI bump, not API)
bacon
2
-4
/
+6
2020-07-22
biology/htslib: Upgrade to 1.10.2
bacon
7
-17
/
+198
2020-06-29
gnome-chemistry-utils: Update to 0.14.16
ryoon
8
-369
/
+354
2020-06-29
openbabel: Fix PLIST
ryoon
1
-2
/
+2
2020-06-29
openbabel: Update to 3.1.1
ryoon
9
-274
/
+244
2020-06-02
Revbump for icu
adam
6
-12
/
+12
2020-05-25
biology/ncbi-blast+: document possible array[char] bug
rillig
1
-1
/
+7
2020-05-25
biology/fastp: document possible array[char] bug
rillig
1
-1
/
+7
2020-05-22
revbump after updating security/nettle
adam
2
-4
/
+4
2020-05-20
mark packages that fail with -Werror=char-subscripts
rillig
1
-1
/
+8
2020-05-16
biology/canu: fix build on NetBSD-8.0-x86_64
rillig
2
-1
/
+21
2020-05-16
biology/canu: fix SUBST blocks to actually find the Java code
rillig
1
-17
/
+7
2020-05-14
biology/canu: don't try to chmod system binaries
rillig
1
-2
/
+2
2020-05-06
revbump after boost update
adam
2
-4
/
+4
2020-05-03
biology/arka: document 2 instances of char as array index
rillig
1
-1
/
+4
2020-05-02
openbabel: fix build on SunOS
wiedi
4
-3
/
+23
2020-04-27
py-mol: use buildlink for py-numpy
adam
1
-3
/
+2
2020-04-12
Recursive revision bump after textproc/icu update
adam
1
-2
/
+2
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