summaryrefslogtreecommitdiff
path: root/biology
AgeCommit message (Collapse)AuthorFilesLines
2009-09-23honour PKGMANDIRtnn2-6/+9
2009-09-14update master_sites. remove ftp.ebi.ac.uk. file has been removed.zafer1-3/+2
2009-09-05Update to Chemtool 1.6.12.asau4-32/+11
Changes since previous package: Chemtool-1.6.12 (June 7, 2009) This release contains another round of fixes for label positioning and clipping of bonds around labels. The pen color button has been replaced by a drop-down menu, and a "white" pen for drawing on colored backgrounds has been added. Chemtool now automatically resizes its main window on small (netbook) screens, and it can also be used in an non-interactive mode to create postscript (etc.) output from previously created chemtool structure files. The Polish translation has been updated, and a new Bulgarian translation has been added. Chemtool-1.6.11 (August 26, 2007) This release contains numerous fixes for label positioning and sub/superscript kerning. Bond length and zoom factor are now stored with the drawing, bond clipping of multiple bonds was improved and new special key sequences for circled plus and minus symbols were added. The configuration dialog now lists gtklp among the supported print commands. Source layout and build system were reorganized to make addition of translations easier, and a Portuguese localization file was added. Chemtool-1.6.10 (April 8th, 2007) This release adds PNG export, round brackets, text output in east-european locales and some new templates. Several bugs related to special character handling in GTK2, screen display of labels and exporting to EPS and SVG have been fixed. The configuration dialog has been redone and now includes support for kprinter, and the labeling shortcuts no longer interfere with GTK's menu accelerators.
2009-08-25Change default for zip extraction to leave files as they are.wiz1-2/+2
Previously, zip extraction by default converted to lower case. Fix some packages that need it and remove -L from some packages that manually set it.
2009-08-09Update to 14.4:wiz3-8/+9
Changes: This release adds a feature that can automatically choose food quantities when a meal is to have a particular amount of fat, protein, or carbohydrate. Currently, you can modify a food quantity from the meal list by typing the food number and a new quantity. For example, "2 100g" means change food #2 to 100 grams. This feature allows the user to type "protein", "carb", or "fat" instead of an explicit new quantity. For example, "2 carb" indicates that you want the second food's quantity changed so that the meal's Daily Value for non-fiber carb is satisfied. * 14.3 Changes: This release modifies the default polyunsaturated fat reference values. * 14.2 Changes: This release revises the default fatty acid reference values. * 14.1 Changes: This release updates the Omega-3 defaults. * 14.0 Changes: This release introduces the new USDA Nutrient Database SR21, and allows current nut installations to have their existing meal records reinterpreted with the new database.
2009-07-22Remove USE_DIRS from pkgsrc.wiz1-2/+1
Shared directories can now be created independently by the pacakges needing them and will be removed automatically by pkg_delete when empty. Packages needing empty directories can use the @pkgdir command in PLIST. Discussed and ok'd in thread starting at http://mail-index.netbsd.org/tech-pkg/2009/06/30/msg003546.html
2009-07-16Not MAKE_JOBS_SAFE.joerg1-1/+2
2009-07-16Fix patch-aa sum.joerg1-2/+2
2009-07-08user-destdir supportjoerg1-3/+6
2009-07-08user-destdir supportjoerg1-4/+6
2009-07-08user-destdir supportjoerg5-25/+40
2009-07-08user-destdirjoerg1-5/+6
2009-06-30Mark packages as MAKE_JOBS_SAFE=no that failed in a bulk build withjoerg1-1/+3
MAKE_JOBS=2 and worked without.
2009-06-14Drop @unexec, pkg_delete will do the right thing.joerg1-2/+1
2009-06-14Remove @dirrm entries from PLISTsjoerg21-122/+21
2009-06-12Made the Makefile simpler.rillig2-10/+7
Removed unnecessary .gz suffix from man pages.
2009-05-19Use standard location for LICENSE line (in MAINTAINER/HOMEPAGE/COMMENTwiz1-2/+2
block). Uncomment some commented out LICENSE lines while here.
2009-05-16update homepage, update master site.zafer1-3/+3
2009-05-16fetch from gentoo mirror.zafer1-2/+2
2009-05-16update homepage and master site. new master needs active ftp. it doesn't ↵zafer1-3/+3
work with EPSV. commented out.
2009-05-16update master site.zafer2-4/+4
2009-05-16update master site and homepage.zafer1-3/+3
2009-05-16update master sitezafer1-2/+2
2009-04-28Add master site. Remove broken ones. OK'd by obache.zafer1-4/+3
2009-03-05Remove PYBINMODULE. All it did was mark some packages as not availablejoerg1-2/+1
on some platforms that lacked shared library support in the past. The list hasn't been maintained at all and the gain is very limited, so just get rid of it.
2009-02-17Reset maintainer, mail bouncedjoerg1-2/+2
2008-11-10Bump PKGREVISION for libXaw API depends bump due to libXaw8 removal.wiz1-2/+2
2008-10-19Bump the PKGREVISION for all packages which depend directly on perl,he1-2/+2
to trigger/signal a rebuild for the transition 5.8.8 -> 5.10.0. The list of packages is computed by finding all packages which end up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl, or PERL5_PACKLIST defined in their make setup (tested via "make show-vars VARNAMES=...").
2008-10-11updated to MUMmer3.20schwarz5-45/+25
2008-09-12Add license, and rewrite RESTRICTED based on it (basically similar).gdt1-2/+2
2008-06-20Add DESTDIR support.joerg1-3/+6
2008-06-12Add DESTDIR support.joerg1-7/+9
2008-05-26Second round of explicit pax dependencies. As reminded by tnn@,joerg5-12/+19
many packages used to use ${PAX}. Use the common way of directly calling pax, it is created as tool after all.
2008-05-25Explicitly add pax dependency in those Makefiles that use it (or havejoerg1-2/+2
patches to add it). Drop pax from the default USE_TOOLS list. Make bsdtar the default for those places that wanted gtar to extract long links etc, as bsdtar can be built of the tree.
2008-05-18Fix typo intoroduced by mechanical DESTDIR fix.obache1-2/+2
noticed by Hasso Tepper in PR 38687.
2008-04-25Update PYTHON_VERSIONS_COMPATIBLEjoerg1-2/+1
- assume that Python 2.4 and 2.5 are compatible and allow checking for fallout. - remove PYTHON_VERSIONS_COMPATIBLE that are obsoleted by the 2.3+ default. Modify the others to deal with the removals.
2008-04-07Fix DESTDIR installation.joerg1-4/+3
2008-04-04Fix DESTDIR installation.joerg1-4/+2
2008-03-09Add misc/dvtm, biology/mopac, emulators/yabause.tnn1-1/+2
2008-03-09Import mopac-7.0 as pkgsrc/biology/mopac.tnn8-0/+193
Mopac is semiempirical molecular energy calculation program for chemistry and physics. From pkgsrc-wip, original from PR pkg/18046 by Osamu OISHI.
2008-03-03Mechanical changes to add full DESTDIR support to packages that installjlam16-87/+128
their files via a custom do-install target.
2008-01-30Update nut to 13.2. Should close PR 34466.obache6-33/+25
Pkgsrc changes: Add DESTDIR support. Recent changes (cannot available changes from 10.18 to 12.6 anymore). 13.2: This release makes minor changes to the analysis reset and food suggestion functions. 13.1: This release changes some fatty acid defaults to allow more saturated fat when eating low-carb, and to raise the maximum amount of long-chain Omega-3. 13.0: This release introduces the new USDA Nutrient Database SR20 and allows current NUT installations to have their existing meal records reinterpreted with the new database. 12.7: This release uses a new food name abbreviation algorithm so that food names are more informative and less cryptic.
2008-01-19Reset maintainer on his request.wiz1-2/+2
2007-12-29Update MASTER_SITES and HOMEPAGE. From Zafer Aydogan.wiz1-3/+3
2007-11-06Old MASTER_SITES was no longer working.reed1-2/+2
Fix from Zafer in PR #37270.
2007-08-13Added mk/misc/category.mk, which contains the definitions that are onlyrillig1-2/+2
useful for category Makefiles, as opposed to bsd.pkg.subdir.mk, which is also relevant for the top-level directory. Adjusted the category Makefiles.
2007-08-12Finish move of pymol to py-mol.wiz5-834/+2
2007-08-12Reimport biology/pymol as py-mol, and change its PKGNAME to follow thewiz4-0/+834
python-in-pkgsrc standards. Add conflict with old pkgname. Keep PKGREVISION even though the package has a new name to confuse the users less.
2007-08-11Fix path to python. Use postive PYTHON_VERSIONS_ACCEPTED.joerg1-3/+6
Bump revision. XXX Should be renamed to follow python module naming convention.
2007-06-08Remove dead MASTER_SITES. From Zafer Aydogan.wiz1-5/+3
generated by cgit v1.2.3 (git 2.39.1) at 2024-11-25 11:01:06 +0000