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2017-11-13Update to 1.1.0wen3-832/+1241
Upstream changes: 1.1.0: (doi: 10.5281/zenodo.165135) - General: * Read support for Guralp Compressed Format (GCF) waveform data, obspy.io.gcf (see #1449) * Read support for Reftek 130 (rt130) waveform data, obspy.io.reftek (see #1433) * Add Nordic format (s-file) read/write (see #1517) * Read and write support for events in the SCARDEC catlogue format (see #1391). * Read support for IASPEI ISF ISM 1.0 Bulletin event data, (see #1946) * Write support for AH (Ad Hoc version 1) format (see #1754) * Client to access the Nominal Response Library (NRL) (see #1185). * `obspy.read_inventory()` can now read dataless SEED and RESP files (see #1185). * change version number scheme for scenarios when no official version number can be determined (see #1889 and #1916) * Support for the IRIS Federator and EIDAWS FDSNWS web routing services (see #1779 and #1919). - obspy.core: * UTCDateTime is now based on nanoseconds (long) instead of a unix timestamp in microseconds (float) - resulting in higher precision and support for years 1-9999 (see #1325) * Ensure that Trace.data is always C-contiguous in memory (see #1732) * Event/ResourceIdentifier is now object aware, meaning even if two objects share a resource_id the distinct objects will be returned with the get_referred_object method provided both are still in scope. If one of the objects gets garbage collected, however, a warning will be issued and the behavior will be the same as before (see #1644). * Better error message when attempting to write invalid QuakeML resource ids (see #1699). * Stream/Trace.write() can now autodetect file format from file extension (see #1321). * New convenience property `.matplotlib_date` for `UTCDateTime` objects to get matplotlib datetime float representation (which can be used in time-based matplotlib axes, e.g. by Stream.plot(); see #1339). * Trace.times() has new options `type` and `reftime` to support fetching an array of sampletimes in various different timing varieties ("relative": the old default, float relative to trace starttime or `reftime` in seconds; "utcdatetime": absolute times as UTCDateTime objects; "timestamp": array of float POSIX timestamps, compare `UTCDateTime.timestamp`; "matplotlib": array of float matplotlib dates, useful for plotting on matplotlib time axes; see #1307) * A trace's stats.network/station/location/channel can now also be set in one line using a SEED ID string (e.g. `trace.id = "GR.FUR..HHZ"`, see #1439). * Instrument correction for response list stages originating from inventory objects (see #1514). * `Stream.rotate(...)` can now also be used to rotate unaligned channels to Z-N-E, given an Inventory (see #1310) * Non finite floats (NaN, inf, -inf) can now no longer be set for all event objects (see #1597). * Instrument responses can now also be calculated for a given list of frequencies (see #1598). * Order of extra tags for event type classes serialized to QuakeML can now be controlled by using an OrderedDict (see #1617) * Bode plots can now optionally plot the phase in degrees (see #1763). * `Stream.select()` now also works on the component level if channels only have one letter (see #1847). * Now strips all invalid characters from the temporary filenames used for downloading data using the `read_X()` methods (see #1958). - obspy.clients.earthworm: * Much faster trace unpacking (see #1762). - obspy.clients.fdsn: * empty SEED codes (e.g. ``network=''``) will now be properly sent to the server as options and not omitted, which led to wildcard matching (for details see #1578) * The mass downloader now has `exclude_networks` and `exclude_stations` arguments to not download certain pieces of data. (see #1305) * The mass downloader can now download stations that are part of a given inventory object. * The mass downloader now also works with restricted data. (See #1350) * No data (HTTP 204) responses now raise `FDSNNoDataException` rather than the more general `FDSNException`. * Fixing cross implementation of bulk waveform and station requests (see #1685). * Adding mappings for the TEXNET (see #1852) and the ICGC (see #1902) services. * Support for the non-standard EIDA token authentication (see #1928). - obspy.imaging: * The functionality behind the `obspy-scan` command line script has been refactored into a `Scanner` class so that it can be reused in custom workflows. (see #1444) - obspy.imaging.cm: * new colormap: viridis_white. This is a modification of viridis that goes to white instead of yellow but remains perceptually uniform. It is especially useful for printing when an image should merge with the white background. - obspy.imaging.waveform: * Support for filling the wiggles when plotting sections (horizontal and vertical, see #1445). - obspy.io.arclink: * Read support for Arclink Inventory XML (see #1539) * default for `route` parameter in metadata requests is changed to `False` (see #1756) - obspy.io.ascii: * Custom formatting of sample values when writing SLIST and TSPAIR. - obspy.io.datamark: * Renamed without deprectation to obspy.io.win to match its original name. Datamark is a datalogger, saving the WIN format. - obspy.io.gse2: * Read support for GSE2.0 bulletin (see #1528) - obspy.io.nlloc: * Also parse author information and COMMENT line (see #1484) * Fix reading hypocenter files created by NonLinLoc versions of the 6.0.x beta branch (see #1760 and #1783) - obspy.io.quakeml: * Read and write support for nested custom tags (see #1463) * Fix some minor bugs that could lead to empty stub elements, e.g. like empty MomentTensor when reading and later writing again a QuakeML file with a FocalMechanism but no MomentTensor, potentially resulting in QuakeML files that breach the QuakeML schema (see #1896) - obspy.io.seiscomp: * Read and write support for SC3ML event (see #1638 and #1848) * Fix bug where files with arbitrary publicIDs and files with missing depth, latitude, longitude, or elevation tags could not be read (see #1817) - obspy.io.stationtxt: * Write support for stationtxt format (see #1466) - obspy.io.stationxml: * Read and write support for custom tags (see #1024) * No longer add the (unused) time zone field to StationXML datetimes to follow the example of big data centers. (see #1572) * Level of detail can be specified during inventory write (see #1830) using the level keyword (one of: network, station, channel, response). * Skip empty and incomplete channels during reading (see #1839, #1840). - obspy.io.segy: * Fixing an issue when comparing two still packed SEG-Y trace headers (see #1735). * Iterative reading of large SEG-Y and SU files with `obspy.io.segy.segy.iread_segy` and `obspy.io.segy.segy.iread_su`. (see #1400). * Write correct revision number (see #1737). * Textual headers will now always contain the file revision number and the end header mark if nothing else exists at these positions (see #1738). * The SEG-Y format detection now also checks the format version number (see #1781). * Enable reading SEG-Y files that have day of year 0 in trace header (see #1722). * Write textual file headers also if given as a text string (see #1811, #1813). - obspy.io.css: * Read support for NNSA KB Core format waveform data. (see #1332) - obspy.io.mseed: * New generic get_flags() utility function able to retrieve statistics about all fixed header flags and the timing quality. This makes the get_timing_and_data_quality() function obsolete which is thus deprecated and will be removed with the next release. The get_flags() function is also much faster. (see #1141) * Always hook up the libmseed logging to its Python counterpart to avoid some rare segfaults. (see #1658) * Update to libmseed v2.19.5 (see #1703, #1780, #1939). * Correctly read MiniSEED files with a data offset of 48 bytes (see #1540). * InternalMSEEDReadingError now called InternalMSEEDError and InternalMSEEDReadingWarning now called InternalMSEEDWarning as both can now also be raised in non-reading contexts (see #1658). * Should no-longer segfault with arbitrarily truncated files (see #1728). * Will now raise an exception when attempting to directly read mini-SEED files larger than 2048 MiB (#1746). * `.stats.mseed` attributes are no longer per-file but per-trace where applicable (see #1782). * `get_record_information()` - Don't fail if the word order is invalid. - obspy.io.nlloc: * Set preferred origin of event (see #1570) - obspy.io.nordic: * Add Nordic format (s-file) read/write (see #1517) - obspy.io.win: * see obspy.io.datamark. - obspy.io.xseed: * Added azimuth and dip to the get_coordinates() function. (see #1315) * Fixing some issues with the get_resp() output on Python 3 (see #1748). * Can now also parse RESP files (see #1185). * Can transform responses in the Parser object to ObsPy Inventory objects (see #1185). - obspy.scripts: * obspy-scan command line script now also plots and prints overlaps alongside gaps (see #1366) * obspy-plot now has option to disable min/max plot (see #1583) - obspy.signal: * fixed a bug in calibration.rel_calib_stack (resulting amplitude response had wrong scaling if using non-default "overlap_fraction", see #1821) * fixed a bug in coincidence_trigger() with event templates. when a template with mismatching SEED ID was encountered all following (potentially valid) templates were skipped as well (see #1850) * New obspy.signal.quality_control module to compute quality metrics from MiniSEED files. (see #1141) * New correlate function for calculating the cross-correlation function (new implementation based on Scipy). To calculate the shift of the maximum of the cross correlation use xcorr_max. The old xcorr function is deprecated but currently still exists (see #1585). * New obspy.signal.regression module to compute linear regressions, with or without weights, with or without allowing for an intercept. (see #1716, #1747) * add new plotting capabilities to PPSD (temporal variations per frequency and spectrogram-like plot) and also make underlying processed PSDs available via `PPSD.psd_values` property (see #1327) * Fixed bug in `rotate2zne()` for non-orthogonal configurations (see #1913, #1927). * Fixed build warnings in evalresp, partially backported from evalresp 4.0.6 (see #1939). - obspy.taup: * Add obspy.taup.taup_geo.calc_dist_azi, a function to return the distance, azimuth and backazimuth for a source - receiver pair. (see #1538) * Fixing calculations through very small regional models. (see #1761) * Updated ray path plot method, added travel time plot method, and wrapper functions for both ray path and travel time plotting. (see #1501, #1877)
2017-10-08osm2pgsql: update to 0.94.0wiedi2-9/+7
Release 0.94.0, a new stable branch This is the last release which will support old-style multipolygons. Upgrading to this version requires a reimport for the slim table changes. Major changes since 0.92.0 are - Coordinates are now stored unprojected in slim tables, and an osmium dense file array is used for flat nodes. This dense file array can be read by other libosmium-based programs. - Libosmium is used for geometry building instead of GEOS This offers speed increases, improves code, and avoids relying on a large library for a small portion of its functionality. Other changes are - Tile expiry has been rewritten, fixing bugs, including one that dropped large portions of expiry lists. - Node tags are no longer stored in slim tables, consistent with flat-nodes. THis reduces space required for --slim imports without --flat-nodes. - A default database name of gis is no longer assumed. An explicit -d option is recommended if compatibility with 0.92 and earlier.
2017-10-07gama: update to 1.19gdt1-4/+3
Version 1.19 June 2017 * fixed a bug introduced in 1.16, reported by Pierre Bosser <pierre.bosser@ensta-bretagne.fr>. Implicit value of covariance band in XML adjustment output is -1 (full bandwidth).
2017-10-03*: Recursive PKGREVISION bump for vala 0.38 update.wiz1-2/+2
2017-10-03Update geography/mapcode to 2.5.4.fhajny2-8/+8
- Added encodeLatLonToSelectedMapcode as a convenience for languages that use the C library, but have difficulties dealing with multi-dimensional arrays (like Swift).
2017-09-29geography/py-geojson: update to 2.3.0kleink2-7/+7
2.3.0 (2017-09-18) ------------------ - Add ``__getitem__`` methods to sequence-like objects - https://github.com/frewsxcv/python-geojson/pull/103
2017-09-28py-country: update to 17.9.23adam2-8/+10
17.9.23: - Update to iso-codes 3.76
2017-09-28gdal-lib: revbump for geos update (gdal abuses C++ API)gdt1-2/+2
2017-09-28Update to 3.6.2gdt4-27/+27
Changes in 3.6.2 2017-07-25 - Bug fixes / improvements - Fix exception in UnaryUnion of collection of touching polygons (#837) - Allow building against python 3 (#774) - Fix build with android-ndk and other compilers (#799) - Allows compiling with -Wpointer-bool-conversion (#638) - Fix unhandled exception on invalid fp operation (#811) - Fix overloaded virtual print in DirectedEdge* (#812) - AppVeyor CI build added (#813) - Clean up numerous MSVC warnings, notably C4275 and C4589 (#814) - Bump CMake version to 3.0.0 (#817) - Fix leaks in WKT parser (#830) Changes in 3.6.1 2016-12-24 - Bug fixes / improvements - Fix GEOSSTRtree_nearest_r signature and add implementation (#796) - Fix --static-clibs and --static-cclibs returns from geos-config - Fix WKB representation of empty polygon (#680). - Fix empty GEOSSimplify return on inner ring collapse (#741) Changes in 3.6.0 2016-10-25 - Important / Breaking Changes: - The PHP binding moved to its own repository: http://git.osgeo.org/gogs/geos/php-geos (#765) - New things: - CAPI: GEOSGeom_{get,set}UserData (Rashad Kanavath) - CAPI: GEOSGeom_{set,get}Precision (#713) - CAPI: GEOSMinimumRotatedRectangle and GEOSMinimumWidth (#729, Nyall Dawson) - CAPI: GEOSSTRtree_nearest (#768, Dan Baston) - CAPI: GEOSMinimumClearance and GEOSMinimumClearanceLine (#776, Dan Baston) - C++ API changes: - Automatic memory management for GeometryFactory objects
2017-09-28Update to 1.19gdt3-33/+5
gama now requires c++11. It's likely that 1.18 did also, but that this was less obvious. Besides items noted in upstream NEWS, two pkgsrc patches were applied upstream. Version 1.19 June 2017 * fixed a bug introduced in 1.16, reported by Pierre Bosser <pierre.bosser@ensta-bretagne.fr>. Implicit value of covariance band in XML adjustment output is -1 (full bandwidth).
2017-09-25Reduce namespace pollution.joerg3-1/+51
2017-09-18py-geojson: update to 2.2.0adam2-7/+7
2.2.0: - Allow constructing geojson objects from geojson objects
2017-09-18revbump for requiring ICU 59.xmaya16-32/+32
2017-09-16Reset maintainerwiz3-6/+6
2017-09-12Fix opencpn on armbouyer3-3/+24
For some reason ocpnDC::DrawEllipse is miscompiled on NetBSD 8.0_BETA earmv7hf: for the tail call to dc->DrawEllipse() the compiler emits a bx instruction, but forgets to load the address of the function in the register. Add a memory barrier to works around this problem by avoiding the tail-call optimisation. Other similar functions in this file are properly compiled ... Bump PKGREVISION
2017-09-12geography/py-geojson: update to 2.1.0adam3-11/+8
2.1.0: - Implement validation for GeometryCollection 2.0.0: - Rewrite of validation mechanism (breaking change).
2017-09-09Another day, another C++ syntax change.dholland2-1/+17
2017-09-09Make this compile.dholland1-1/+11
- since it got changed to depend on swig2, have it run swig2. - since it got changed to use guile20, add guile20's include path.
2017-09-06Update HOMEPAGEgdt1-2/+2
2017-09-06Comment out dead sites.wiz10-20/+20
2017-09-03Follow some redirects.wiz1-2/+2
2017-09-03Comment out dead MASTER_SITES/HOMEPAGEs.wiz1-2/+2
2017-09-03Fix HOMEPAGE.wiz1-3/+2
2017-08-27PkgSrc: Renamed geography/py-pycountry to geography/py-countryadam8-704/+698
17.5.14: Update to iso-codes 3.75, which fixes 13389 again. (bad parent codes for GB). Switch from building on drone.io (discontinued service) to bitbucket’s Pipelines. Update pytest dependencies to get rid of API warnings. 17.01.08: Update to iso-codes 3.73, which fixes 13389 (bad parent codes for CZ). 17.01.02: Return empty lists from the subdivision database if the country exists but does not have any subdivisions. Fixes 13374. Some typo fixes. Thanks to @VictorMireyev. Update to iso-codes-3.72.
2017-08-24Revbump for boost updateadam8-14/+16
2017-08-24Revbump for boost updateadam2-4/+4
2017-08-24We need -Wl,-Bsymbolic in the linker flags for NetBSD too, not only linux.bouyer15-94/+70
The reason is that a plugin may include its private version of some code that opencpn also has in its source. Without -Bsymbolic the plugin may use the objects from opencpn instead of its version, and which do not match the includes it was compiled with, and bad things happens. bump PKGREVISIONs
2017-08-24Update opencpn to 4.8.0.bouyer5-54/+327
As a successor to OpenCPN Version 4.6.1, OpenCPN Version 4.8.0 contains several incremental corrections and improvements. Among them are: - Expanded integrated vector graphics icon set for improved rendering of waypoints and routes.
2017-08-16Comment out dead sites.wiz1-3/+3
2017-08-01Update py-geojson to 1.3.5.kleink2-7/+7
1.3.5 (2017-04-24) ------------------ - Changed the validator to allow elevation - https://github.com/frewsxcv/python-geojson/pull/92
2017-08-01Comment out some dead HOMEPAGEs.wiz1-2/+2
2017-08-01Update HOMEPAGE. Set LICENSE.wiz1-2/+3
2017-07-10Update to 2.64wen2-8/+7
Upstream changes: 2.64 2017-04-23 - Update some POD - No functional changes from 2.63_001 dev release 2.63_001 2017-04-17 - Add no_cache option to new method following discussion at http://www.perlmonks.org/?node_id=1188065 2.62 2017-01-08 - Add rlib to TEST_REQUIRES in Makefile.PL to avoid some cygwin test failures
2017-07-07Update to 20170611. Changes since previous:bouyer2-8/+8
add wind and weather alarms
2017-07-07Update to 1.4.Changes since 1.3:bouyer2-8/+8
Various fixes, mostly for PIL and EBL
2017-06-21Update to TeXlive 2017markd6-65/+77
Updated print/tex-paralist{,-doc} to 2.7 Updated print/tex-pdfpages{,-doc} to 0.5h Updated print/tex-plain to 3.141592653.43076 Updated print/tex-platex{,-doc} to 2017 Updated print/tex-polski{,-doc} to 1.3.4 Updated print/tex-preview{,-doc} to 11.90 Updated print/tex-program{,-doc} to 3.3.14 Updated graphics/tex-pst-3dplot{,-doc} to 2.04 Updated graphics/tex-pst-barcode{,-doc} to 0.16a Updated graphics/tex-pst-circ{,-doc} to 2.14 Updated geography/tex-pst-geo{,-doc} to 2.06 Updated graphics/tex-pst-node{,-doc} to 1.39 Updated graphics/tex-pst-pdf{,-doc} to 1.2c Updated graphics/tex-pst-plot{,-doc} to 1.79 Updated graphics/tex-pst-tools{,-doc} to 0.06 Updated graphics/tex-pst-tree{,-doc} to 1.13 Updated graphics/tex-pstricks{,-doc} to 2.73a Updated graphics/tex-pstricks-add{,-doc} to 3.83 Updated print/tex-ptex-base{,-doc} to 2017 Updated fonts/tex-ptex-fonts{,-doc} to 2017
2017-06-13bring back geos buildlink as it is still requiredwiedi1-1/+2
2017-06-10Update osm2pgsql to 0.92.1wiedi5-45/+30
Release 0.92.1 This fixes two important bugs which impacted relations with excessive members and consuming updates with the multi backend Release 0.92.0, a new stable branch Major changes since 0.90.0 are - PostgreSQL 9.1 + PostGIS 2.0 or later are now required, which has allowed performance improvements and cleanups - EPSG 3857 is now default. You can get the old behavior by manually specifying 900913 - Invlid geometries are re-checked for validity after buffering, instead of assuming GEOS returns a valid geom Other changes are - A new option to change the max bbox size at which polygons will expire all the tiles in them, not just the boundary - Behavior fixes for C transforms and tables with no columns - More numeric datatypes are allowed for table columns in C tagtransforms - Lua is now required by default - Code fixes, particularly replacement of C memory management
2017-06-05Recursive revbump from lang/perl5 5.26.0ryoon9-16/+18
2017-06-01Fix 64bit time_t. Bump PKGREVISIONbouyer3-3/+19
2017-05-29Recursive bump for lang/valawiz1-2/+2
2017-05-03Convert CXXFLAGS setting C++ standard to USE_LANGUAGES.jperkin1-8/+2
2017-04-30Recursive revbump from boost updateryoon10-19/+20
2017-04-22Revbump after icu updateadam16-32/+32
2017-04-18Add patch missed from the 20170414 update. This caused the build to failbouyer1-0/+12
so no change to PKGREVISION.
2017-04-18Fix build for non-x86 hosts (don't assume non-linux is i386!)bouyer2-7/+30
2017-04-14Update URLs for new OpenCPN web sitebouyer4-8/+8
2017-04-14Add opencpn-plugin-statusbarbouyer1-1/+2
2017-04-14Add opencpn-plugin-statusbar version 20170414bouyer5-0/+94
OpenCPN is a free software (GPLv2) project to create a concise chart plotter and navigation software, for use underway or as a planning tool. OpenCPN is developed by a team of active sailors using real world conditions for program testing and refinement. The status bar plugin provides customizable, easier to read output text and lower cpu usage than the builtin statusbar.
2017-04-14Update to 20170414. Changes since last version:bouyer2-10/+11
update alberg35 polar, more descriptive error message and a few other small fixes