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2020-10-12math/blas, math/lapack: Install interchangeable BLAS systembacon1-2/+3
Install the new interchangeable BLAS system created by Thomas Orgis, currently supporting Netlib BLAS/LAPACK, OpenBLAS, cblas, lapacke, and Apple's Accelerate.framework. This system allows the user to select any BLAS implementation without modifying packages or using package options, by setting PKGSRC_BLAS_TYPES in mk.conf. See mk/blas.buildlink3.mk for details. This commit should not alter behavior of existing packages as the system defaults to Netlib BLAS/LAPACK, which until now has been the only supported implementation. Details: Add new mk/blas.buildlink3.mk for inclusion in dependent packages Install compatible Netlib math/blas and math/lapack packages Update math/blas and math/lapack MAINTAINER approved by adam@ OpenBLAS, cblas, and lapacke will follow in separate commits Update direct dependents to use mk/blas.buildlink3.mk Perform recursive revbump
2019-08-08Update all R packages to canonical form.brook1-6/+4
The canonical form [1] of an R package Makefile includes the following: - The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as needed), and CATEGORIES. - HOMEPAGE is not present but defined in math/R/Makefile.extension to refer to the CRAN web page describing the package. Other relevant web pages are often linked from there via the URL field. This updates all current R packages to this form, which will make regular updates _much_ easier, especially using pkgtools/R2pkg. [1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
2019-07-31R-gstat: update to version 2.0.2.brook2-11/+14
Update to the canonical form of an R package and fix the LICENSE field.
2018-07-28Remove MASTER_SITES= from individual R package Makefiles.brook1-2/+1
Each R package should include ../../math/R/Makefile.extension, which also defines MASTER_SITES. Consequently, it is redundant for the individual packages to do the same. Package-specific definitions also prevent redefining MASTER_SITES in a single common place.
2017-07-10Don't hard-code dependency on g95. It seems unnecessary as well.joerg1-2/+1
From Thomas Orgis.
2016-02-25Update to 1.1.2wen2-7/+10
Add missing DEPENDS Upstream changes: Changes in version 1.1-2 (2016-02-22) fixed memcpy for overlapping regions error, found in valgrind checks by Brian Ripley fixed a few more (small) memory leaks Changes in version 1.1-1 (2016-02-19) Further cleaned up C source code, got rid of lex and yacc files Improve fit.variogram to choose initial values for range, sill and nugget before fitting, and fit over a range of model types allow NA values in vgm Fixed https://github.com/edzer/gstat/issues/1 Changes in version 1.1-0 (2015-10-17) remove meschach matrix library, rewrote interface, link to R's lapack improve notification in case of singular matrices remove all C code that was not used by R package gstat add Makevars, remove configure remove links to ai-geostats.org wrap fit.StVariogram example in dontrun Changes in version 1.0-26 (2015-08-26) use ordered spatial index when selecting nearest strongest correlated neighbours in local kriging to avoid warning of spacetime update spatio-temporal geostatitics vignettes; add R Journal draft add spatio-temporal PM10 interpolation movie (mp4)
2015-11-03Add SHA512 digests for distfiles for math categoryagc1-1/+2
Problems found locating distfiles: Package dfftpack: missing distfile dfftpack-20001209.tar.gz Package eispack: missing distfile eispack-20001130.tar.gz Package fftpack: missing distfile fftpack-20001130.tar.gz Package linpack: missing distfile linpack-20010510.tar.gz Package minpack: missing distfile minpack-20001130.tar.gz Package odepack: missing distfile odepack-20001130.tar.gz Package py-networkx: missing distfile networkx-1.10.tar.gz Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz Package quadpack: missing distfile quadpack-20001130.tar.gz Otherwise, existing SHA1 digests verified and found to be the same on the machine holding the existing distfiles (morden). All existing SHA1 digests retained for now as an audit trail.
2013-01-24Update to 1.0.15wen2-7/+7
Upstream changes: 2012-12-14 10:03 BenediktGraeler * pkg/demo/stkrige.R: - updated demo stkrige.R 2012-12-10 17:36 EdzerPebesma * pkg/tests/Examples/gstat-Ex.Rout.save: examples check 2012-12-10 17:30 EdzerPebesma * pkg/R/gstat.formula.R, pkg/R/gstat.formula.predict.R, pkg/R/predict.gstat.R: added checking of factor levels, as lm() does it. 2012-12-03 14:11 EdzerPebesma * pkg/DESCRIPTION: date 2012-11-28 20:04 BenediktGraeler * gstat_1.0-15.zip, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R, pkg/inst/doc/st.Rnw, pkg/man/fit.StVariogram.Rd, pkg/man/variogramSurface.Rd: - updated the vignette "st" to meet the new implementations 2012-11-22 14:41 BenediktGraeler * gstat_1.0-15.zip, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R, pkg/man/fit.StVariogram.Rd, pkg/man/variogramSurface.Rd: - added a simplified sumMetric model having only a joint nugget - added the metric model including a spatio-temporal anisotropy 2012-11-21 17:01 BenediktGraeler * ., gstat_1.0-15.zip, pkg/man/variogramSurface.Rd: - added compiled windows version gstat_1.0-15.zip - fixed example in variogramSurface.Rd 2012-11-21 16:14 BenediktGraeler * pkg/R/krige0.R, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R, pkg/man/variogramSurface.Rd: - added man/variogramSurface.Rd - fixed prodSum model in R/krige0.R and R/stVariogramModels.R - updated demo/stkrige.R 2012-11-20 20:02 EdzerPebesma * pkg/NAMESPACE, pkg/R/krige.R, pkg/R/krige0.R, pkg/demo/00Index, pkg/demo/stkrige.R, pkg/tests/Examples/gstat-Ex.Rout.save: added stkrige demo; polished krige for ST method. 2012-11-20 17:53 EdzerPebesma * pkg/DESCRIPTION: update 2012-11-20 14:27 BenediktGraeler * pkg/man/fit.StVariogram.Rd: - fixed versioning issues 2012-11-20 14:26 BenediktGraeler * pkg/man/krige.Rd: 2012-11-20 11:07 BenediktGraeler * pkg/NAMESPACE, pkg/R/krige0.R, pkg/R/stVariogramModels.R, pkg/man/fit.StVariogram.Rd, pkg/man/krige.Rd: - added functio fit.StVariogram - added sumMetric covariance model handling as well STSDF 2012-11-19 10:22 EdzerPebesma * pkg/NAMESPACE, pkg/R/krige0.R, pkg/R/variogramST.R, pkg/man/krige.Rd: added krige method; cleaned up NAMESPACE, changed call to zoo into as.zoo 2012-11-16 14:11 BenediktGraeler * pkg/R/krige0.R, pkg/R/stVariogramModels.R: - added automated fitting of some StVariograms (separable, productSum, sumMetric) 2012-11-13 15:40 BenediktGraeler * pkg/R/krige0.R: added support for the product-sum model in spatio-temporal kriging 2012-11-12 18:20 EdzerPebesma * pkg/DESCRIPTION, pkg/NAMESPACE, pkg/tests/Examples, pkg/tests/Examples/gstat-Ex.Rout.save, pkg/tests/windst.R, pkg/tests/windst.Rout.save: updated imports; Imports spacetime (>=1.0-0); added examples check. 2012-11-11 15:04 EdzerPebesma * pkg/DESCRIPTION, pkg/NAMESPACE, pkg/R/fit.variogram.R, pkg/R/fit.variogram.reml.R, pkg/R/gstat.debug.R, pkg/R/load.variogram.model.R, pkg/R/predict.gstat.R, pkg/R/set.R, pkg/R/variogram.default.R, pkg/R/variogramLine.R, pkg/R/vgm.R, pkg/R/zzz.R, pkg/tests/blockkr.Rout.save, pkg/tests/covtable.Rout.save, pkg/tests/cv.Rout.save, pkg/tests/cv3d.Rout.save, pkg/tests/fit.Rout.save, pkg/tests/krige0.Rout.save, pkg/tests/line.Rout.save, pkg/tests/merge.Rout.save, pkg/tests/na.action.Rout.save, pkg/tests/rings.Rout.save, pkg/tests/sim.Rout.save, pkg/tests/unproj.Rout.save, pkg/tests/variogram.Rout.save, pkg/tests/vdist.Rout.save, pkg/tests/windst.R, pkg/tests/windst.Rout.save: moved zoo, xts and spacetime from Depends: into Imports: changed all .Call() calls to follow the new format without quotes. 2012-11-10 22:56 EdzerPebesma * pkg/tests/unproj.Rout.save, pkg/tests/windst.Rout.save: updated test outputs 2012-11-10 21:06 EdzerPebesma * pkg/DESCRIPTION: added rgeos in Suggests: 2012-11-10 16:13 EdzerPebesma * pkg/R/krige.R, pkg/man/fulmar.Rd, pkg/man/vv.Rd, pkg/tests/krige0.Rout.save, pkg/tests/windst.Rout.save: updated manual pages; first attempts for S/T idw in krige.R (untested!) updated test outputs 2012-11-08 20:42 EdzerPebesma * pkg/demo/fulmar.R, pkg/demo/gstat3D.R, pkg/demo/wind.R: updated / corrected demos 2012-10-28 19:01 EdzerPebesma * pkg/src/s.c, pkg/tests/krige0.Rout.save, pkg/tests/windst.Rout.save: s.c: removed #ifdef WIN32; tests: update to 2.15.2 2012-10-28 18:41 EdzerPebesma * pkg/man/krige.Rd: added idw(formula, ST) method alias 2012-10-15 20:34 EdzerPebesma * pkg/data/vv.rda: new st variogram, with zero spatial lags 2012-10-15 20:01 EdzerPebesma * pkg/R/variogramST.R: computes pure time variogram, for zero space lag. 2012-10-14 21:26 EdzerPebesma * pkg/R/krige.R, pkg/R/variogram.ST.R, pkg/R/variogramST.R, pkg/man/variogram.Rd, pkg/src/s.c, pkg/src/sem.c: some work on zero distance semivariances, variogramST still needs more work. 2012-10-06 16:09 EdzerPebesma * pkg/DESCRIPTION, pkg/R/fit.variogram.R, pkg/inst/ChangeLog, pkg/tests/unproj.Rout.save, pkg/tests/windst.Rout.save: version change; fit.variogram now fits Err models, too. 2012-09-12 14:21 EdzerPebesma * pkg/R/fit.variogram.R: for variogramCloud fitting, np shoud be 1 2012-09-12 14:20 EdzerPebesma * pkg/R/fit.variogram.R, pkg/R/fit.variogram.reml.R, pkg/R/gstat.debug.R, pkg/R/krige0.R, pkg/R/load.variogram.model.R, pkg/R/predict.gstat.R, pkg/R/set.R, pkg/R/variogram.default.R, pkg/R/variogramLine.R, pkg/R/vgm.R, pkg/R/zzz.R: added PACKAGE="gstat" argument to all .Call or .C calls; allow fit.variogram to fit to variogramCloud objects 2012-07-24 17:40 EdzerPebesma * pkg/tests/unproj.Rout.save: version update 2012-07-23 13:59 EdzerPebesma * pkg/demo/lhs.R: replaced non-ASCII character 2012-07-01 22:36 EdzerPebesma * makefile, pkg/DESCRIPTION, pkg/src/s.c: version update; #include <S.h>; added -Wall to checking 2012-06-18 14:06 EdzerPebesma * pkg/R/show.vgms.R, pkg/src/chfactor.c, pkg/src/copy.c, pkg/src/data.c, pkg/src/err.c, pkg/src/fit.c, pkg/src/getest.c, pkg/src/hsehldr.c, pkg/src/init.c, pkg/src/ivecop.c, pkg/src/lex.c, pkg/src/lufactor.c, pkg/src/machine.c, pkg/src/mapio.c, pkg/src/matop.c, pkg/src/meminfo.c, pkg/src/memory.c, pkg/src/msim.c, pkg/src/norm.c, pkg/src/parse.c, pkg/src/polygon.c, pkg/src/predict.c, pkg/src/pxop.c, pkg/src/qrfactor.c, pkg/src/sem.c, pkg/src/solve.c, pkg/src/sparse.c, pkg/src/sprow.c, pkg/src/submat.c, pkg/src/utils.c, pkg/src/vecop.c, pkg/src/version.c, pkg/tests/unproj.Rout.save, pkg/tests/windst.Rout.save: removed all warnings that would result from using -Wall; updated two test outputs. 2012-06-16 20:52 EdzerPebesma * pkg/R/show.vgms.R, pkg/R/vgm.R: as.groups in show.vgms() now works, too. 2012-06-16 16:38 EdzerPebesma * pkg/R/show.vgms.R, pkg/man/show.vgms.Rd: added as.groups argument; typo 2012-06-16 15:37 EdzerPebesma * pkg/R/show.vgms.R, pkg/R/vgm.R, pkg/man/show.vgms.Rd: show.vgms now accepts sill, range and nugget to be vectors of length > 1 2012-05-31 19:06 EdzerPebesma * makefile, pkg/DESCRIPTION, pkg/tests/unproj.R: version; took out gstat.org 2012-05-01 17:32 EdzerPebesma * pkg/man/jura.Rd: url; more comments 2012-05-01 17:28 EdzerPebesma * pkg/man/jura.Rd: comments from David Rossiter 2012-04-30 20:33 EdzerPebesma * standalone/makefile, standalone/makefile.in, standalone/src/version.h: removed configure target 2012-04-30 19:42 EdzerPebesma * pkg/man/oxford.Rd: reference to jpg corrected, noted by David Rossiter 2012-04-30 12:54 EdzerPebesma * attic/S/makefile, makefile, pkg/DESCRIPTION, pkg/inst/ChangeLog, pkg/src/block.c, pkg/src/block.h, pkg/src/chfactor.c, pkg/src/config.hin, pkg/src/copy.c, pkg/src/debug.h, pkg/src/defs.h, pkg/src/direct.c, pkg/src/err.c, pkg/src/fit.h, pkg/src/gcdist.c, pkg/src/gcdist.h, pkg/src/getest.h, pkg/src/gls.h, pkg/src/glvars.c, pkg/src/glvars.h, pkg/src/hsehldr.c, pkg/src/lm.c, pkg/src/lufactor.c, pkg/src/machine.c, pkg/src/machine.hin, pkg/src/mapio.c, pkg/src/mapio.h, pkg/src/matop.c, pkg/src/matrix.h, pkg/src/matrix2.h, pkg/src/meminfo.c, pkg/src/meminfo.h, pkg/src/msim.c, pkg/src/msim.h, pkg/src/nsearch.c, pkg/src/nsearch.h, pkg/src/parse.c, pkg/src/parse.h, pkg/src/plot.h, pkg/src/polygon.c, pkg/src/polygon.h, pkg/src/pqueue.c, pkg/src/pqueue.h, pkg/src/predict.h, pkg/src/random.h, pkg/src/read.h, pkg/src/reml.c, pkg/src/reml.h, pkg/src/report.h, pkg/src/sem.c, pkg/src/sim.h, pkg/src/solve.c, pkg/src/sparse.h, pkg/src/stat.c, pkg/src/stat.h, pkg/src/userio.c, pkg/src/userio.h, pkg/src/utils.c, pkg/src/utils.h, pkg/src/vario.h, pkg/src/vario_fn.c, pkg/src/vario_fn.h, pkg/src/vario_io.c, pkg/src/vario_io.h, pkg/src/version.h, pkg/tests/cv.Rout.save, pkg/tests/cv3d.Rout.save, standalone/meschach/machine.h, standalone/src/s.h, standalone/src/version.h: added missing src files; increased version number. 2012-04-30 11:46 EdzerPebesma * COPYING, ChangeLog, ChangeLog.cvs, README, S, TODO, aclocal.m4, attic/S, attic/S/R/gstat/src/config.w32, attic/S/R/gstat/src/machine.w32, attic/S/TODO, configure, configure.in, install-sh, makefile, makefile.in, pkg/src/config.w32, pkg/src/machine.w32, standalone/COPYING, standalone/ChangeLog, standalone/ChangeLog.cvs, standalone/README, standalone/aclocal.m4, standalone/configure, standalone/configure.in, standalone/install-sh, standalone/makefile, standalone/makefile.in: further cleanup and code move 2012-04-30 11:31 EdzerPebesma * S/R/gstat/CHANGES, S/R/gstat/DESCRIPTION, S/R/gstat/INDEX, S/R/gstat/LICENCE, S/R/gstat/NAMESPACE, S/R/gstat/aclocal.m4, S/R/gstat/cleanup, S/R/gstat/configure, S/R/gstat/configure.in, S/R/gstat/configure.win, S/R/gstat/inst, S/R/gstat/makefile.in, S/data, S/demo, S/man, S/src, S/tests, cmd, include, lib, meschach, pkg, pkg/CHANGES, pkg/DESCRIPTION, pkg/INDEX, pkg/LICENCE, pkg/NAMESPACE, pkg/R, pkg/R/fit.lmc.R, pkg/R/fit.lmc.q, pkg/R/fit.variogram.R, pkg/R/fit.variogram.gls.R, pkg/R/fit.variogram.gls.q, pkg/R/fit.variogram.q, pkg/R/fit.variogram.reml.R, pkg/R/fit.variogram.reml.q, pkg/R/get.contr.R, pkg/R/get.contr.q, pkg/R/gstat.R, pkg/R/gstat.cv.R, pkg/R/gstat.cv.q, pkg/R/gstat.debug.R, pkg/R/gstat.debug.q, pkg/R/gstat.formula.R, pkg/R/gstat.formula.predict.R, pkg/R/gstat.formula.predict.q, pkg/R/gstat.formula.q, pkg/R/gstat.q, pkg/R/hscat.R, pkg/R/hscat.q, pkg/R/image.data.frame.R, pkg/R/image.data.frame.q, pkg/R/krige.R, pkg/R/krige.cv.R, pkg/R/krige.cv.q, pkg/R/krige.q, pkg/R/krige0.R, pkg/R/krige0.q, pkg/R/krigeTg.R, pkg/R/krigeTg.q, pkg/R/load.variogram.model.R, pkg/R/load.variogram.model.q, pkg/R/map.to.lev.R, pkg/R/map.to.lev.q, pkg/R/ossfim.R, pkg/R/ossfim.q, pkg/R/panel.pointPairs.R, pkg/R/panel.pointPairs.q, pkg/R/plot.gstatVariogram.R, pkg/R/plot.gstatVariogram.q, pkg/R/plot.pointPairs.R, pkg/R/plot.pointPairs.q, pkg/R/plot.variogramCloud.R, pkg/R/plot.variogramCloud.q, pkg/R/predict.gstat.R, pkg/R/predict.gstat.q, pkg/R/print.gstat.R, pkg/R/print.gstat.q, pkg/R/print.variogram.R, pkg/R/print.variogram.q, pkg/R/print.variogramCloud.R, pkg/R/print.variogramCloud.q, pkg/R/print.variogramModel.R, pkg/R/print.variogramModel.q, pkg/R/set.R, pkg/R/set.q, pkg/R/show.vgms.R, pkg/R/show.vgms.q, pkg/R/smenu.R, pkg/R/spplot.R, pkg/R/spplot.q, pkg/R/variogram.ST.R, pkg/R/variogram.default.R, pkg/R/variogram.default.q, pkg/R/variogram.formula.R, pkg/R/variogram.formula.q, pkg/R/variogram.gstat.R, pkg/R/variogram.gstat.q, pkg/R/variogramLine.R, pkg/R/variogramLine.q, pkg/R/variogramST.R, pkg/R/variogramST.q, pkg/R/vgm.R, pkg/R/vgm.panel.R, pkg/R/vgm.panel.q, pkg/R/vgm.q, pkg/R/xyz2img.R, pkg/R/xyz2img.q, pkg/R/zzz.R, pkg/R/zzz.q, pkg/aclocal.m4, pkg/cleanup, pkg/configure, pkg/configure.in, pkg/configure.win, pkg/data, pkg/demo, pkg/inst, pkg/makefile.in, pkg/man, pkg/src, pkg/src/data.c, pkg/src/data.h, pkg/src/defaults.h, pkg/src/direct.h, pkg/src/err.h, pkg/src/ext_dbase.h, pkg/src/fit.c, pkg/src/getest.c, pkg/src/gls.c, pkg/src/init.c, pkg/src/ivecop.c, pkg/src/lex.c, pkg/src/lex.h, pkg/src/lex.l, pkg/src/lm.h, pkg/src/memory.c, pkg/src/meschach, pkg/src/meschach/dmacheps.c, pkg/src/meschach/fmacheps.c, pkg/src/meschach/maxint.c, pkg/src/norm.c, pkg/src/predict.c, pkg/src/pxop.c, pkg/src/qrfactor.c, pkg/src/random.c, pkg/src/read.c, pkg/src/s.c, pkg/src/s.h, pkg/src/select.c, pkg/src/select.h, pkg/src/sem.h, pkg/src/sim.c, pkg/src/sparse.c, pkg/src/sparse2.h, pkg/src/sprow.c, pkg/src/submat.c, pkg/src/vario.c, pkg/src/vecop.c, pkg/src/version.c, pkg/src/zmatrix.h, pkg/src/zmatrix2.h, pkg/tests, src, standalone, standalone/cmd, standalone/include, standalone/lib, standalone/meschach, standalone/src, standalone/src/version.h: code reorganization; moving R package to pkg, standalone stuff to standalone 2012-04-09 17:22 EdzerPebesma * S/R/gstat/inst/ChangeLog, S/makefile: update 2012-03-25 14:46 EdzerPebesma * S/R/gstat/DESCRIPTION: added dependency to zoo and xts 2012-01-20 08:04 EdzerPebesma * S/src/plot.variogramCloud.q: r-sig-geo question from Tom Gottfried, 11/03/2011 2012-01-19 21:12 EdzerPebesma * S/R/gstat/inst/ChangeLog, S/src/plot.variogramCloud.q, src/s.c: minor memory leak fix. 2011-12-19 14:33 EdzerPebesma * S/man/variogram.Rd: added note that variogram.default may not be a very good entry point (likely lacking critical documentation) 2011-12-12 17:06 EdzerPebesma * S/src/krige0.q, S/tests/blockkr.Rout.save, S/tests/covtable.Rout.save, S/tests/cv.Rout.save, S/tests/cv3d.Rout.save, S/tests/fit.Rout.save, S/tests/krige0.Rout.save, S/tests/line.Rout.save, S/tests/merge.Rout.save, S/tests/na.action.Rout.save, S/tests/rings.Rout.save, S/tests/sim.Rout.save, S/tests/unproj.Rout.save, S/tests/variogram.Rout.save, S/tests/vdist.Rout.save, S/tests/windst.R, S/tests/windst.Rout.save: updated tests output (novel zoo warning)
2012-04-15Update to gstat v1.0-10, add LICENSE, and regularize package files.brook3-13/+12
2009-12-11Update to the latest version of the module along with R updateadam2-14/+13
2008-10-14Update R-gstat to 0.9.51markd2-8/+9
many bug fixes
2007-10-25Remove empty PLISTs from pkgsrc since revision 1.33 of plist/plist.mkjlam1-1/+0
can handle packages having no PLIST files.
2007-02-22Whitespace cleanup, courtesy of pkglint.wiz1-6/+6
Patch provided by Sergey Svishchev in private mail.
2006-02-05Recursive revision bump / recommended bump for gettext ABI change.joerg1-1/+2
2005-11-04Imported R-gstat from pkgsrc-wip.rillig4-0/+27
uni- and multivariable geostatistical modelling, prediction and simulation variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and map plotting utility functions.
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