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The canonical form [1] of an R package Makefile includes the
following:
- The first stanza includes R_PKGNAME, R_PKGVER, PKGREVISION (as
needed), and CATEGORIES.
- HOMEPAGE is not present but defined in math/R/Makefile.extension to
refer to the CRAN web page describing the package. Other relevant
web pages are often linked from there via the URL field.
This updates all current R packages to this form, which will make
regular updates _much_ easier, especially using pkgtools/R2pkg.
[1] http://mail-index.netbsd.org/tech-pkg/2019/08/02/msg021711.html
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Update to the canonical form of an R package and fix the LICENSE
field.
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Each R package should include ../../math/R/Makefile.extension, which also
defines MASTER_SITES. Consequently, it is redundant for the individual
packages to do the same. Package-specific definitions also prevent
redefining MASTER_SITES in a single common place.
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Upstream changes:
gtools 3.5.0 - 2015-04-28
-------------------------
New Functions:
- New roman2int() functon to convert roman numerals to integers
without the range restriction of utils::as.roman().
- New asc() and chr() functions to convert between ASCII codes and
characters. (Based on the 'Data Debrief' blog entry for 2011-03-09
at http://datadebrief.blogspot.com/2011/03/ascii-code-table-in-r.html).
- New unByteCode() and unByteCodeAssign() functions to convert a
byte-code functon to an interpeted code function.
- New assignEdgewise() function for making assignments into locked
environments. (Used by unByteCodeAssign().)
Enhacements:
- mixedsort() and mixedorder() now have arguments 'decreasing',
'na.last', and 'blank.last' arguments to control sort ordering.
- mixedsort() and mixedirdeR() now support Roman numerals via the
arguments 'numeric.type', and 'roman.case'. (Request by David
Winsemius, suggested code changes by Henrik Bengtsson.)
- speed up mixedorder() (and hence mixedsort()) by moving
suppressWarnings() outside of lapply loops. (Suggestion by Henrik
Bengtsson.)
- The 'q' argument to quantcut() now accept an integer
indicating the number of equally spaced quantile groups to
create. (Suggestion and patch submitted by Ryan C. Thompson.)
Bug fixes:
- Removed stray browser() call in smartbind().
- ddirichlet(x, alpha) was incorrectly returning NA when for any i,
x[i]=0 and alpha[i]=1. (Bug report by John Nolan.)
Other changes:
- Correct typographical errors in package description.
gtools 3.4.2 - 2015-04-06
-------------------------
New features:
- New function loadedPackages() to display name, version, and path of
loaded packages (package namespaces).
- New function: na.replace() to replace missing values within a
vector with a specified value.`
Bug fixes:
- Modify keywords() to work properly in R 3.4.X and later.
gtools 3.4.1 - 2014-05-27
-------------------------
Bug fixes:
- smartbind() now converts all non-atomic type columns (except factor)
to type character instead of generating an opaque error message.
Other changes:
- the argument to ASCIIfy() is now named 'x' instead of 'string'.
- minor formatting changes to ASCIIfy() man page.
gtools 3.4.0 - 2014-04-14
-------------------------
New features:
- New ASCIIfy() function to converts character vectors to ASCII
representation by escaping them as \x00 or \u0000 codes.
Contributed by Arni Magnusson.
gtools 3.3.1 - 2014-03-01
-------------------------
Bug fixes:
- 'mixedorder' (and hence 'mixedsort') not properly handling
single-character strings between numbers, so that '1a2' was being
handled as a single string rather than being properly handled as
c('1', 'a', '2').
gtools 3.3.0 - 2014-02-11
-------------------------
New features:
- Add the getDependencies() function to return a list of dependencies
for the specified package(s). Includes arguments to control whether
these dependencies should be constructed using information from
locally installed packages ('installed', default is TRUE), avilable
CRAN packages ('available', default is TRUE) and whether to include
base ('base', default=FALSE) and recommended ('recommended', default
is FALSE) packages.
Bug fixes:
- binsearch() was returning the wrong endpoint & value when the found
value was at the upper endpoint.
gtools 3.2.1 - 2014-01-13
-------------------------
Bug fixes:
- Resolve circular dependency with gdata
gtools 3.2.0 - 2014-01-11
-------------------------
New features:
- The keywords() function now accepts a function or function name as
an argument and will return the list of keywords associated with the
named function.
- New function stars.pval() which will generate p-value significance
symbols ('***', '**', etc.)
Bug fixes:
- R/mixedsort.R: mixedorder() was failing to correctly handle numbers
including decimals due to a faulty regular expression.
Other changes:
- capture() and sprint() are now defunct.
gtools 3.1.1 - 2013-11-06
-------------------------
Bug fixes:
- Fix problem with mixedorder/mixedsort when there is zero or one
elements in the argument vector.
gtools 3.1.0 - 2013-09-22
-------------------------
Major changes:
- The function 'addLast()' (deprecated since gtools 3.0.0) is no
longer available, and has been marked defunct.
Bug fixes:
- Modified 'mixedorder()' to use Use 'suppressWarnings() instead of
'options(warn=-1)'. This will avoid egregious warning messages when
called from within a nested environment, such as when run from
within 'knitr'
gtools 3.0.0 - 2013-07-06
-------------------------
Major changes:
- The function 'addLast()' has been deprecated because it directly
manipulates the global environment, which is expressly prohibited by
the CRAN policies.
- A new function, 'lastAdd()' has been created to replace 'addLast()'.
The name has been changed because the two functions require
different syntax. 'addLast()' was used like this:
byeWorld <- function() cat("\nGoodbye World!\n")
addLast(byeWorld)
The new 'lastAdd()' function is used like this:
byeWorld <- function() cat("\nGoodbye World!\n")
.Last <- lastAdd(byeWorld)
Bug fixes:
- Update checkRVersion() to work with R version 3.0.0 and later.
Other changes:
- Remove cross-reference to (obsolete?) moc package
- The function 'assert()' (deprecated since gtools 2.5.0) is no longer
available and has been marked defunct.
gtools 2.7.1 - 2013-03-17
-------------------------
Bug fixes:
- smartbind() was not properly handling factor columns when the first
data frame did not include the relevant column.
gtools 2.7.0 - 2012-06-19
-------------------------
New features:
- smartbind() has a new 'sep' argument to allow specification of the
character(s) used to separate components of constructed column names
- smartbind() has a new 'verbose' argument to provide details on how
coluumns are being processed
Bug fixes:
- smartbind() has been enhanced to improve handling of factor and
ordered factor columns.
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Problems found locating distfiles:
Package dfftpack: missing distfile dfftpack-20001209.tar.gz
Package eispack: missing distfile eispack-20001130.tar.gz
Package fftpack: missing distfile fftpack-20001130.tar.gz
Package linpack: missing distfile linpack-20010510.tar.gz
Package minpack: missing distfile minpack-20001130.tar.gz
Package odepack: missing distfile odepack-20001130.tar.gz
Package py-networkx: missing distfile networkx-1.10.tar.gz
Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz
Package quadpack: missing distfile quadpack-20001130.tar.gz
Otherwise, existing SHA1 digests verified and found to be the same on
the machine holding the existing distfiles (morden). All existing
SHA1 digests retained for now as an audit trail.
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gtools 2.5.0
------------
New features:
- Add checkRVersion() function to determin if a newer version of R is
available.
- Deprecated assert() in favor of base::stopifnot
Bug fixes:
- Fix bug in binsearch() identified by 2.6.0 R CMD CHECK
Other changes:
- Improve text explanation of how defmacro() and strmacro() differ from
function().
- Update definitions of odd() and even() to use modulus operator
instead of division.
gtools 2.4.0
------------
- Add binsearch() function, previously in the genetics() package.
gtools 2.3.1
------------
- Add ask() function to prompt the user and collect a single response.
gtools 2.3.0
------------
- Update email address for Greg
- Add new 'smartbind' function, which combines data frames
efficiently, even if they have different column names.
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can handle packages having no PLIST files.
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Various R programming tools
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