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2017-09-14Update eigen3 to 3.3.4prlw11-6/+6
Changes that might impact existing code Eigen 3.3 fixes a few shortcomings that might impact existing code: * Eigen 3.3 clarifies the usage of the Index type in SparseMatrix, PermutationMatrix, Transpositions, as detailed below. * The normalize and normalized methods will now leave their input unchanged if its norm is 0 or too close to 0. Previously this resulted in a vector containing NaNs or infinities. * internal::significant_decimals_impl is deprecated and users of custom scalar types are encouraged to overload NumTraits<>::digits10(). In Eigen 3.3, the evaluation mechanism of expressions has been completely rewritten. c.f. http://eigen.tuxfamily.org/index.php?title=3.3 Looks as though C++11 support was added and Eigen 2 support removed. Detailed changelog: http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.4
2016-09-13Update eigen3 to 3.2.9prlw11-7/+6
Eigen 3.2.9 Released on July 18, 2016 Changes since 3.2.8: * Main fixes and improvements: + Improve numerical robustness of JacobiSVD (backported from 3.3) + Bug 1017: prevents underflows in makeHouseholder + Fix numerical accuracy issue in the extraction of complex eigenvalue pairs in real generalized eigenvalue problems. + Fix support for vector.homogeneous().asDiagonal() + Bug 1238: fix SparseMatrix::sum() overload for un-compressed mode + Bug 1213: workaround gcc linking issue with anonymous enums. + Bug 1236: fix possible integer overflow in sparse-sparse product + Improve detection of identical matrices when applying a permutation (e.g., mat = perm * mat) + Fix usage of nesting type in blas_traits. In practice, this fixes compilation of expressions such as A*(A*A)^T + CMake: fixes support of Ninja generator + Add a StorageIndex typedef to sparse matrices and expressions to ease porting code to 3.3 (see http://eigen.tuxfamily.org/index.php?title=3.3#Index_typedef) + Bug 1200: make aligned_allocator c++11 compatible (backported from 3.3) + Bug 1182: improve generality of abs2 (backported from 3.3) + Bug 537: fix compilation of Quaternion with Apples's compiler + Bug 1176: allow products between compatible scalar types + Bug 1172: make valuePtr and innerIndexPtr properly return null for empty sparse matrices. + Bug 1170: skip calls to memcpy/memmove for empty inputs. * Others: + Bug 1242: fix comma initializer with empty matrices. + Improves support for MKL's PARDISO solver. + Fix a compilation issue with Pastix solver. + Add some missing explicit scalar conversions + Fix a compilation issue with matrix exponential (unsupported MatrixFunctions module). + Bug 734: fix a storage order issue in unsupported Spline module + Bug 1222: fix a compilation issue in AutoDiffScalar + Bug 1221: shutdown some GCC6's warnings. + Bug 1175: fix index type conversion warnings in sparse to dense conversion. Eigen 3.2.8 Released on February 16, 2016 Changes since 3.2.7: * Main fixes and improvements: + Make FullPivLU::solve use rank() instead of nonzeroPivots(). + Add EIGEN_MAPBASE_PLUGIN + Bug 1166: fix issue in matrix-vector products when the destination is not a vector at compile-time. + Bug 1100: Improve cmake/pkg-config support. + Bug 1113: fix name conflict with C99's "I". + Add missing delete operator overloads in EIGEN_MAKE_ALIGNED_OPERATOR_NEW + Fix (A*B).maxCoeff(i) and similar. + Workaround an ICE with VC2015 Update1 x64. + Bug 1156: fix several function declarations whose arguments were passed by value instead of being passed by reference + Bug 1164: fix std::list and std::deque specializations such that our aligned allocator is automatically activatived only when the user did not specified an allocator (or specified the default std::allocator). * Others: + Fix BLAS backend (aka MKL) for empty matrix products. + Bug 1134: fix JacobiSVD pre-allocation. + Bug 1111: fix infinite recursion in sparse-column-major.row(i).nonZeros() (it now produces a compilation error) + Bug 1106: workaround a compilation issue in Sparse module for msvc-icc combo + Bug 1153: remove the usage of __GXX_EXPERIMENTAL_CXX0X__ to detect C++11 support + Bug 1143: work-around gcc bug in COLAMD + Improve support for matrix products with empty factors. + Fix and clarify documentation of Transform wrt operator*(MatrixBase) + Add a matrix-free conjugate gradient example. + Fix cost computation in CwiseUnaryView (internal) + Remove custom unaligned loads for SSE. + Some warning fixes. + Several other documentation clarifications.
2016-09-02patch pkgconfig fileplunky1-1/+2
cflags was "-Iinclude/eigen3" which was clearly wrong, so add prefix
2015-11-15Remove reference to 3.1.4 from distinfoprlw11-2/+1
2015-11-15Update eigen3 to 3.2.7prlw11-4/+5
Eigen 3.2.7 Released on November 5, 2015 Changes since 3.2.6: * Main fixes and improvements: + Add support for dense.cwiseProduct(sparse). + Fix a regression regarding (dense*sparse).diagonal(). + Make the IterativeLinearSolvers module compatible with MPL2-only mode by defaulting to COLAMDOrdering and NaturalOrdering for ILUT and ILLT respectively. + [59]Bug 266: backport support for c++11 move semantic + operator/=(Scalar) now performs a true division (instead of mat*(1/s)) + Improve numerical accuracy in LLT and triangular solve by using true scalar divisions (instead of mat * (1/s)) + [60]Bug 1092: fix iterative solver constructors for expressions as input + [61]Bug 1088: fix setIdenity for non-compressed sparse-matrix + [62]Bug 1086: add support for recent SuiteSparse versions * Others: + Add overloads for real-scalar times SparseMatrix<complex> operations. This avoids real to complex conversions, and also fixes a compilation issue with MSVC. + Use explicit Scalar types for AngleAxis initialization + Fix several shortcomings in cost computation (avoid multiple re-evaluation in some very rare cases). + [63]Bug 1090: fix a shortcoming in redux logic for which slice-vectorization plus unrolling might happen. + Fix compilation issue with MSVC by backporting DenseStorage::operator= from devel branch. + [64]Bug 1063: fix nesting of unsupported/AutoDiffScalar to prevent dead references when computing second-order derivatives + [65]Bug 1100: remove explicit CMAKE_INSTALL_PREFIX prefix to conform to cmake install's DESTINATION parameter. + unsupported/ArpackSupport is now properly installed by make install. + [66]Bug 1080: warning fixes Eigen 3.2.6 Released on October 1, 2015 Changes since 3.2.5: * fix some compilation issues with MSVC 2013, including bugs [67]1000 and [68]1057 * SparseLU: fixes to support EIGEN_DEFAULT_TO_ROW_MAJOR ([69]bug 1053), and for empty ([70]bug 1026) and some structurally rank deficient matrices ([71]bug 792) * [72]Bug 1075: fix AlignedBox::sample() for Dynamic dimension * fix regression in AMD ordering when a column has only one off-diagonal non-zero (used in sparse Cholesky) * fix Jacobi preconditioner with zero diagonal entries * fix Quaternion identity initialization for non-implicitly convertible types * [73]Bug 1059: fix predux_max<Packet4i> for NEON * [74]Bug 1039: fix some issues when redefining EIGEN_DEFAULT_DENSE_INDEX_TYPE * [75]Bug 1062: fix SelfAdjointEigenSolver for RowMajor matrices * MKL: fix support for the 11.2 version, and fix a naming conflict ([76]bug 1067) + [77]Bug 1033: explicit type conversion from 0 to RealScalar Eigen 3.3-alpha1 Released on September 4, 2015 See the [78]announcement. Eigen 3.2.5 Released on June 16, 2015 Changes since 3.2.4: * Changes with main impact: + Improve robustness of SimplicialLDLT to semidefinite problems by correctly handling structural zeros in AMD reordering + Re-enable supernodes in SparseLU (fix a performance regression in SparseLU) + Use zero guess in ConjugateGradients::solve + Add PermutationMatrix::determinant method + Fix SparseLU::signDeterminant() method, and add a SparseLU::determinant() method + Allows Lower|Upper as a template argument of CG and MINRES: in this case the full matrix will be considered + [79]Bug 872: remove usage of std::bind* functions (deprecated in c++11) * Numerical robustness improvements: + [80]Bug 1014: improve numerical robustness of the 3x3 direct eigenvalue solver + [81]Bug 1013: fix 2x2 direct eigenvalue solver for identical eigenvalues + [82]Bug 824: improve accuracy of Quaternion::angularDistance + [83]Bug 941: fix an accuracy issue in ColPivHouseholderQR by continuing the decomposition on a small pivot + [84]Bug 933: improve numerical robustness in RealSchur + Fix default threshold value in SPQR * Other changes: + Fix usage of EIGEN_NO_AUTOMATIC_RESIZING + Improved support for custom scalar types in SparseLU + Improve cygwin compatibility + [85]Bug 650: fix an issue with sparse-dense product and rowmajor matrices + [86]Bug 704: fix MKL support (HouseholderQR) + [87]Bug 705: fix handling of Lapack potrf return code (LLT) + [88]Bug 714: fix matrix product with OpenMP support + [89]Bug 949: add static assertions for incompatible scalar types in many of the dense decompositions + [90]Bugs 957, [91]1000: workaround MSVC/ICC compilation issues when using sparse blocks + [92]Bug 969: fix ambiguous calls to Ref + [93]Bugs 972, [94]986: add support for coefficient-based product with 0 depth + [95]Bug 980: fix taking a row (resp. column) of a column-major (resp. row-major) sparse matrix + [96]Bug 983: fix an alignement issue in Quaternion + [97]Bug 985: fix RealQZ when either matrix had zero rows or columns + [98]Bug 987: fix alignement guess in diagonal product + [99]Bug 993: fix a pitfall with matrix.inverse() + [100]Bugs 996, [101]1016: fix scalar conversions + [102]Bug 1003: fix handling of pointers non aligned on scalar boundary in slice-vectorization + [103]Bug 1010: fix member initialization in IncompleteLUT + [104]Bug 1012: enable alloca on Mac OS or if alloca is defined as macro + Doc and build system: [105]733, [106]914, [107]952, [108]961, [109]999 Eigen 3.2.4 Released on January 21, 2015 Changes since 3.2.3: * Fix compilation regression in Rotation2D * [110]Bug 920: fix compilation issue with MSVC 2015. * [111]Bug 921: fix utilization of bitwise operation on enums in first_aligned. * Fix compilation with NEON on some platforms. Eigen 3.2.3 Released on December 16, 2014 Changes since 3.2.2: * Core: + Enable Mx0 * 0xN matrix products. + [112]Bug 859: fix returned values for vectorized versions of exp(NaN), log(NaN), sqrt(NaN) and sqrt(-1). + [113]Bug 879: tri1 = mat * tri2 was compiling and running incorrectly if tri2 was not numerically triangular. Workaround the issue by evaluating mat*tri2 into a temporary. + [114]Bug 854: fix numerical issue in SelfAdjointEigenSolver::computeDirect for 3x3 matrices. + [115]Bug 884: make sure there no call to malloc for zero-sized matrices or for a Ref<> without temporaries. + [116]Bug 890: fix aliasing detection when applying a permutation. + [117]Bug 898: MSVC optimization by adding inline hint to const_cast_ptr. + [118]Bug 853: remove enable_if<> in Ref<> ctor. * Dense solvers: + [119]Bug 894: fix the sign returned by LDLT for multiple calls to compute(). + Fix JacobiSVD wrt underflow and overflow. + [120]Bug 791: fix infinite loop in JacobiSVD in the presence of NaN. * Sparse: + Fix out-of-bounds memory write when the product of two sparse matrices is completely dense and performed using pruning. + UmfPack support: fix redundant evaluation/copies when calling compute(), add support for generic expressions as input, and fix extraction of the L and U factors ([121]Bug 911). + Improve SparseMatrix::block for const matrices (the generic path was used). + Fix memory pre-allocation when permuting inner vectors of a sparse matrix. + Fix SparseQR::rank for a completely empty matrix. + Fix SparseQR for row-major inputs. + Fix SparseLU::absDeterminant and add respective unit test. + BiCGSTAB: make sure that good initial guesses are not destroyed by a bad preconditioner. * Geometry: + Fix Hyperplane::Through(a,b,c) when points are aligned or identical. + Fix linking issues in OpenGLSupport. * OS, build system and doc: + Various compilation fixes including: [122]bug 821, [123]bug 822, [124]bug 857, [125]bug 871, [126]bug 873. + Fix many compilation warnings produced by recent compilers including: [127]bug 909. + [128]Bug 861: enable posix_memalign with PGI. + Fix BiCGSTAB doc example. Eigen 3.2.2 Released on August 4, 2014 Changes since 3.2.1: * Core: + Relax Ref such that Ref<MatrixXf> accepts a RowVectorXf which can be seen as a degenerate MatrixXf(1,N) + Fix performance regression for the vectorization of sub columns/rows of matrices. + EIGEN_STACK_ALLOCATION_LIMIT: Raise its default value to 128KB, make use of it to assert on maximal fixed size object, and allows it to be 0 to mean "no limit". + [129]Bug 839: Fix 1x1 triangular matrix-vector product. + [130]Bug 755: CommaInitializer produced wrong assertions in absence of Return-Value-Optimization. * Dense solvers: + Add a rank() method with threshold control to JacobiSVD, and make solve uses it to return the minimal norm solution for rank-deficient problems. + Various numerical fixes in JacobiSVD, including:[131]bug 843, and the move from Lapack to Matlab strategy for the default threshold. + Various numerical fixes in LDLT, including the case of semi-definite complex matrices. + Fix ColPivHouseholderQR::rank(). + [132]Bug 222: Make temporary matrix column-major independently of EIGEN_DEFAULT_TO_ROW_MAJOR in BlockHouseholder. * Sparse: + [133]http://eigen.tuxfamily.org/bz/show_bug.cgi?id=838 Bug 838]: Fix dense * sparse and sparse * dense outer products and detect outer products from either the lhs or rhs. + Make the ordering method of SimplicialL[D]LT configurable. + Fix regression in the restart mechanism of BiCGSTAB. + [134]Bug 836: extend SparseQR to support more columns than rows. + [135]Bug 808: Use double instead of float for the increasing size ratio in CompressedStorage::resize, fix implicit conversions from int/longint to float/double, and fix set_from_triplets temporary matrix type. + [136]Bug 647: Use smart_copy instead of bitwise memcpy in CompressedStorage. + GMRES: Initialize essential Householder vector with correct dimension. * Geometry: + [137]Bug 807: Missing scalar type cast in umeyama() + [138]Bug 806: Missing scalar type cast in Quaternion::setFromTwoVectors() + [139]Bug 759: Removed hard-coded double-math from Quaternion::angularDistance. * OS, build system and doc: + Fix compilation with Windows CE. + Fix some ICEs with VC11. + Check IMKL version for compatibility with Eigen + [140]Bug 754: Only inserted (!defined(_WIN32_WCE)) analog to alloc and free implementation. + [141]Bug 803: Avoid char* to int* conversion. + [142]Bug 819: Include path of details.h file. + [143]Bug 738: Use the "current" version of cmake project directories to ease the inclusion of Eigen within other projects. + [144]Bug 815: Fix doc of FullPivLU wrt permutation matrices. + [145]Bug 632: doc: Note that dm2 = sm1 + dm1 is not possible + Extend AsciiQuickReference (real, imag, conjugate, rot90) Eigen 3.2.1 Released on February 26, 2014 Changes since 3.2.0: * Eigen2 support is now deprecated and will be removed in version 3.3. * Core: + Bug fix for Ref object containing a temporary matrix. + [146]Bug 654: Allow construction of row vector from 1D array. + [147]Bug 679: Support cwiseMin() and cwiseMax() on maps. + Support conservativeResize() on vectors. + Improve performance of vectorwise and replicate expressions. + [148]Bug 642: Add vectorization of sqrt for doubles, and make sqrt really safe if EIGEN_FAST_MATH is disabled. + [149]Bug 616: Try harder to align columns when printing matrices and arrays. + [150]Bug 579: Add optional run-time parameter to fixed-size block methods. + Implement .all() and .any() for zero-sized objects + [151]Bug 708: Add placement new and delete for arrays. + [152]Bug 503: Better C++11 support. * Dense linear algebra: + [153]Bug 689: Speed up some matrix-vector products by using aligned loads if possible. + Make solve in FullPivHouseholderQR return least-square solution if there is no exact solution. + [154]Bug 678: Fix fullPivHouseholderQR for rectangular matrices. + Fix a 0/0 issue in JacobiSVD. + [155]Bug 736: Wrong result in LDLT::isPositiveDefinite() for semi-definite matrices. + [156]Bug 740: Fix overflow issue in stableNorm(). + Make pivoting HouseholderQR compatible with custom scalar types. * Geometry: + Fix compilation of Transform * UniformScaling * Sparse matrices: + Fix elimination tree and SparseQR for fat rectangular matrices. + [157]Bug 635: add isCompressed to MappedSparseMatrix for compatibility. + [158]Bug 664: Support iterators without operator< in setFromTriplets(). + Fixes in SparseLU: infinite loop, aliasing issue when solving, overflow in memory allocation, use exceptions only if enabled ([159]bug 672). + Fixes in SparseQR: reduce explicit zero, assigning result to map, assert catching non-conforming sizes, memory leak. + [160]Bug 681: Uninitialized value in CholmodSupport which may lead to incorrect results. + Fix some issues when using a non-standard index type ([161]bug 665 and more) + Update constrained CG (unsupported module) to Eigen3. * OS and build system: + MacOS put OpenGL header files somewhere else from where we expected it. + Do not assume that alloca() is 16-byte aligned on Windows. + Compilation fixes when using ICC with Visual Studio. + Fix Fortran compiler detection in CMake files. * Fix some of our tests (bugs [162]744 and [163]748 and more). * Fix a few compiler warnings (bug [164]317 and more). * Documentation fixes (bugs [165]609, [166]638 and [167]739 and more).
2015-11-03Add SHA512 digests for distfiles for math categoryagc1-1/+2
Problems found locating distfiles: Package dfftpack: missing distfile dfftpack-20001209.tar.gz Package eispack: missing distfile eispack-20001130.tar.gz Package fftpack: missing distfile fftpack-20001130.tar.gz Package linpack: missing distfile linpack-20010510.tar.gz Package minpack: missing distfile minpack-20001130.tar.gz Package odepack: missing distfile odepack-20001130.tar.gz Package py-networkx: missing distfile networkx-1.10.tar.gz Package py-sympy: missing distfile sympy-0.7.6.1.tar.gz Package quadpack: missing distfile quadpack-20001130.tar.gz Otherwise, existing SHA1 digests verified and found to be the same on the machine holding the existing distfiles (morden). All existing SHA1 digests retained for now as an audit trail.
2013-10-06Update to 3.1.4:wiz1-4/+4
Changes since 3.1.3: Bug 620: Fix robustness and performance issues in JacobiSVD::solve. Bug 613: Fix accuracy of SSE sqrt for very small numbers. Bug 608: Fix sign computation in LDLT. Fix write access to CwiseUnaryView expressions. Fix compilation of transposeInPlace() for Array expressions. Fix non const data() member in Array and Matrix wrappers. Fix a few warnings and compilation issues with recent compiler versions. Documentation fixes.
2013-05-29Update to 3.1.3. Add comment to patch.wiz1-5/+5
Changes since 3.1.2: Bug 526 - Fix linear vectorized transversal in linspace. Bug 551 - Fix compilation issue when using EIGEN_DEFAULT_DENSE_INDEX_TYPE. Bug 533 - Fix some missing const qualifiers in Transpose Fix a compilation with CGAL::Gmpq by adding explicit internal:: namespace when calling abs(). Fix computation of outer-stride when calling .real() or .imag(). Fix handmade_aligned_realloc (affected conservativeResize()). Fix sparse vector assignment from a sparse matrix. Fix log(0) with SSE. Fix bug in aligned_free with windows CE. Fix traits of Map<Quaternion. Fix a few warnings (507, 535, 581). Enable SSE with ICC even when it mimics a gcc version lower than 4.2 Workaround gcc-4.7 bug #53900 (too aggressive optimization in our alignment check)
2013-04-01Don't try to detect the pkgconfig directory, hard-wire the one used injoerg1-1/+2
pkgsrc. It seems like the detection sometimes picked up the wrong value. Adjust PLIST and bump revision.
2013-03-17Add eigen3 version 3.1.2markd1-0/+5
Eigen 3 is a C++ template library for linear algebra: vectors, matrices, and related algorithms.