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2019-02-08revbump go dependents after lang/go111 and lang/go110 updatesspz2-4/+4
2018-12-27Use alloca.h only for __sun.joerg2-1/+17
2018-12-26octave: fix building with recent Qt5adam5-31/+303
Do not look for qcollectiongenerator, it has been incorporared into qhelpgenerator.
2018-12-23py-z3: set GITHUB_PROJECT to fix fetch stagewiz1-1/+2
2018-12-22py-numexpr: updated to 2.6.9adam2-7/+7
Changes from 2.6.8 to 2.6.9 - Thanks to Mike Toews for more robust handling of the thread-setting environment variables. - With Appveyor updating to Python 3.7.1, wheels for Python 3.7 are now available in addition to those for other OSes.
2018-12-21Update to 1.1.19wen2-7/+7
Upstream changes: CHANGES IN VERSION 1.1-19 NEW FEATURES influence measure code from car rolled in (see ?influence.merMod) mkReTrm gets new arguments reorder.terms, reorder.vars to control arrangement of RE terms and individual effects with RE terms within model structures adding material from the RePsychLing package (on GitHub; see Bates et al 2015 arXiv:1506.04967) to show orthogonal variance components. USER-VISIBLE CHANGES as.data.frame.merMod finds conditional variance information stored either as attr(.,"postVar") or attr(.,"condVar") (for glmmTMB compatibility) change to defaults of [g]lmerControl to print a message when fits are singular new utility isSingular() function for detecting singular fits; by default a message is printed for singular fits allFit function/methods have been moved to the main package, rather than being included in an auxiliary source file post-fitting convergence checks based on estimated gradient and Hessian (see troubleshooting) are no longer performed for (nearly-)singular fits (see isSingular) CHANGES IN VERSION 1.1-18-1 (2018-08-17) This is a minor release; the only change is to roll back (unexport) the influence.merMod method, pending resolution of conflicts with the car package CHANGES IN VERSION 1.1-18 ((2018-08-16) USER-VISIBLE CHANGES ranef(.,condVar=TRUE) now works when there are multiple random effects terms per factor NEW FEATURES rstudent and influence methods are available for merMod objects devfun2 function (for generating a deviance function that works on the standard deviation/correlation scale) is now exported BUG FIXES lmList now obeys its pool argument (instead of always using what currently is the default, GH #476) CHANGES IN VERSION 1.1-17 (2018-04-03) This is a maintenance release only (fixes CRAN problems with cross-platform tests and examples) CHANGES IN VERSION 1.1-16 (2018-03-28) BUG FIXES lmList no longer ignores the subset argument (John Fox) fixed several minor issues with predicting when (1) grouping variables have different levels from original model (e.g. missing levels/factor levels not explicitly specified in newdata) or (2) re.form is a subset of the original RE formula and some (unused) grouping variables are omitted from newdata (GH #452, #457) USER-VISIBLE CHANGES lmList tries harder to collect errors and pass them on as warnings documented as.function method (given a merMod object, returns a function that computes the deviance/REML criterion for specified parameters) print method for summary.merMod objects no longer collapses small values of the t-statistic to zero
2018-12-21Update to 1.3.1wen2-7/+7
No upstream changelog found.
2018-12-21Add R-carDatawen1-1/+2
2018-12-21Import carData-3.0.2 as math/R-carData.wen3-0/+25
Datasets to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage (forthcoming).
2018-12-21Update to 1.1.2.2wen2-8/+8
Upstream changes: CHANGES IN FNN VERSION 1.1.2 o Remove C++ uses of 'register' keyword. o Register native routines.
2018-12-21Update to 3.5.2wen3-9/+11
Upstream changes: CHANGES IN R 3.5.2: PACKAGE INSTALLATION: * New macro CXX_VISIBILITY analogous to C_VISIBILITY (which several packages have been misusing for C++ code) for the default C++ compiler (but not necessarily one used for non-default C++ dialects like C++14). TESTING: * The random number generator tests in tests/p-r-random-tests.R no longer fail occasionally as they now randomly sample from "certified" random seeds. BUG FIXES: * The "glm" method of drop1() miscalculated the score test (test="Rao") when the model contained an offset. * Linear multiple empty models such as lm(y ~ 0) now have a correctly dimensioned empty coefficient matrix; reported by Brett Presnell. * vcov(<empty mlm>) and hence confint() now work (via a consistency change in summary.lm()). * confint(<multiple lm()>) now works correctly; reported on R-devel by Steven Pav. * quade.test() now also works correctly when its arguments are not yet sorted along groups, fixing PR#15842. * Installation on a Unix-alike tries harder to link to the pthread library where required (rather than relying on OpenMP to provide it: configuring with --disable-openmp was failing on some Linux systems). * The data.frame method for print(x) is fast now also for large data frames x and got an optional argument max, thanks to suggestions by Juan Telleria. * hist() no longer integer overflows in very rare cases, fixing PR#17450. * untar() ignored a character compressed argument: however many external tar programs ignore the flags which should have been set and automagically choose the compression type, and if appropriate gzip or bzip2 compression would have been chosen from the magic header of the tarball. * zapsmall(x) now works for more "number-like" objects. * The tools-internal function called from R CMD INSTALL now gets a warnOption = 1 argument and only sets options(warn = warnOption) when that increases the warning level (PR#17453). * Analogously, the tools-internal function called from R CMD check gets a warnOption = 1 argument and uses the larger of that and getOption("warn"), also allowing to be run with increased warning level. * Parse data now have deterministic parent nodes (PR#16041). * Calling match() with length one x and POSIXlt table gave a segfault (PR#17459). * Fork clusters could hang due to a race condition in cluster initialization (makeCluster()). * nextn(n) now also works for larger n and no longer loops infinitely for e.g, n <- 214e7. * cooks.distance() and rstandard() now work correctly for multiple linear models ("mlm"). * polym() and corresponding lm() prediction now also work for a boundary "vector" case fixing PR#17474, reported by Alexandre Courtiol. * With a very large number of variables terms() could segfault (PR#17480). * cut(rep(0, 7)) now works, thanks to Joey Reid and Benjamin Tyner (PR#16802). * download.file(*, method = "curl", cacheOK = FALSE) should work now on Windows, thanks to Kevin Ushey's patch in PR#17323. * duplicated(<dataframe with 'f'>) now works, too, thanks to Andreas Kersting's PR#17485; ditto for anyDuplicated(). * legend(*, cex = 1:2) now works less badly. * The print() method for POSIXct and POSIXlt now correctly obeys getOption("max.print"), fixing a long-standing typo, and it also gets a corresponding optional max argument. * Unserialization of raw vectors serialized in ASCII representation now works correctly. * <data frame>[TRUE, <new>] <- list(c1, c2) now works correctly, thanks to Suharto Anggono's PR#15362 and Emil Bode's patch in PR#17504. * seq.int(*, by=by, length=n) no longer wrongly "drops fractional parts" when by is integer, thanks to Suharto Anggono's report PR#17506. * Buffering is disabled for file() connections to non-regular files (like sockets), as well as fifo() and pipe() connections. Fixes PR#17470, reported by Chris Culnane.
2018-12-19Revbump all Go packages after go111 update.bsiegert2-4/+4
2018-12-18z3: Upgrade to 4.8.3kamil11-352/+48
Eliminate merged patches. Improve java support. Patch by Michal Gorny. Upstream changelog ================== z3-4.8.3 This release covers bug fixes since 4.8.1 .NET bindings for dotnet standard 1.4 on windows and 64 bit Linux systems and MacOs z3-4.8.1 New requirements: A breaking change to the API is that parsers for SMT-LIB2 formulas return a vector of formulas as opposed to a conjunction of formulas. The vector of formulas correspond to the set of "assert" instructions in the SMT-LIB input. New features A parallel mode is available for select theories, including QF_BV. By setting parallel.enable=true Z3 will spawn a number of worker threads proportional to the number of available CPU cores to apply cube and conquer solving on the goal. The SAT solver by default handle cardinality and PB constraints using a custom plugin that operates directly on cardinality and PB constraints. A "cube" interface is exposed over the solver API. Model conversion is first class over the textual API, such that subgoals created from running a solver can be passed in text files and a model for the original formula can be recreated from the result. This has also led to changes in how models are tracked over tactic subgoals. The API for extracting models from apply_result have been replaced. An optional mode handles xor constraints using a custom xor propagator. It is off by default and its value not demonstrated. The SAT solver includes new inprocessing techniques that are available during simplification. It performs asymmetric tautology elimination by default, and one can turn on more powerful inprocessing techniques (known as ACCE, ABCE, CCE). Asymmetric branching also uses features introduced in Lingeling by exploiting binary implication graphs. Use sat.acce=true to enable the full repertoire of inprocessing methods. By default, clauses that are "eliminated" by acce are tagged as lemmas (redundant) and are garbage collected if their glue level is high. Substantial overhaul of the spacer horn clause engine. Added basic features to support Lambda bindings. Added model compression to eliminate local function definitions in models when inlining them does not incur substantial overhead. The old behavior, where models are left uncompressed can be replayed by setting the top-level parameter model_compress=false. Integration of a new solver for linear integer arithmetic and mixed linear integer arithmetic by Lev Nachmanson. It incorporates several improvements to QF_LIA solving based on . using a better LP engine, which is already the foundation for QF_LRA . including cuts based on Hermite Normal Form (thanks to approaches described in "cuts from proofs" and "cutting the mix"). . extracting integer solutions from LP solutions by tightening bounds selectively. We use a generalization of Bromberger and Weidenbach that allows avoiding selected bounds tighthenings (https://easychair.org/publications/paper/qGfG). It solves significantly more problems in the QF_LIA category and may at this point also be the best solver for your problem as well. The new solver is enabled only for select SMT-LIB logics. These include QF_LIA, QF_IDL, and QF_UFLIA. Other theories (still) use the legacy solver for arithmetic. You can enable the new solver by setting the parameter smt.arith.solver=6 to give it a spin. Removed features: interpolation API duality engine for constrained Horn clauses. pdr engine for constrained Horn clauses. The engine's functionality has been folded into spacer as one of optional strategies. long deprecated API functions have been removed from z3_api.h Z3 4.7.1. official release cumulative bug fix since 4.6.0 minor version incremented as API now uses stdbool and stdint: bool and int64_t, uint64_t Official release Z3 4.6.0.
2018-12-16py-Theano: updated to 1.0.3adam4-22/+20
Theano 1.0.3: - Theano is now compatible with Python 3.7 - Broadcasting for sparse dot products works correctly - Subtensor grads do not return int anymore
2018-12-15*: update email for fhajnywiz1-2/+2
2018-12-15math: Add bcalleot1-1/+2
2018-12-15bcal: Import bcal-2.1 as math/bcalleot5-0/+71
bcal (Byte CALculator) is a REPL CLI utility for storage expressions, unit conversions or address calculations. If you can't calculate the hex address offset for (512 - 16) MiB, or the value when the 43rd bit of a 64-bit address is set mentally, bcal is for you. It has a bc(1) mode for general-purpose numerical calculations. Only 64-bit operating systems are supported. Packaged by Sijmen J. Mulder in pkgsrc-wip, thanks!
2018-12-13revbump for boost 1.69.0adam16-31/+32
2018-12-10py-munkres: updated to 1.0.12adam2-10/+18
Version 1.0.12: - Merged Pull Request 11] which simplifies conversion of a profit matrix to a cost matrix, in the default case. - Merged Pull Request 7 which fixes a message. - Added more tests.
2018-12-09py-numba: updated to 0.41.0adam4-163/+224
Version 0.41.0 This release adds the following major features: * Diagnostics showing the optimizations done by ParallelAccelerator * Support for profiling Numba-compiled functions in Intel VTune * Additional NumPy functions: partition, nancumsum, nancumprod, ediff1d, cov, conj, conjugate, tri, tril, triu * Initial support for Python 3 Unicode strings General Enhancements: * armv7 support * invert mapping b/w binop operators and the operator module * First attempt at parallel diagnostics * Adding NUMBA_ENABLE_PROFILING envvar, enabling jit event * Support for np.partition * Support for np.nancumsum and np.nancumprod * Add location information to exceptions. * Support for np.ediff1d * Support for np.cov * Support user pipeline class in with lifting * string support * Improve error message for empty imprecise lists. * Enable overload(operator.getitem) * Support negative indexing in tuple. * Refactor Const type * Optimized usage of alloca out of the loop * Updates for llvmlite 0.26 * Add support for `np.conj/np.conjugate`. * np.tri, np.tril, np.triu - default optional args * Permit dtype argument as sole kwarg in np.eye CUDA Enhancements: * Add max_registers Option to cuda.jit Continuous Integration / Testing: * CI with Azure Pipelines * Workaround race condition with apt * Fix issues with Azure Pipelines * Fix `RuntimeWarning: 'numba.runtests' found in sys.modules` * Disable openmp in wheel building * Azure Pipelines templates * Fix cuda tests and error reporting in test discovery * Prevent faulthandler installation on armv7l * Fix CUDA test that used negative indexing behaviour that's fixed. * Start Flake8 checking of Numba source Fixes: * Fix dispatcher to only consider contiguous-ness. * Fix 3119, raise for 0d arrays in reductions * Reduce redundant module linking * Fix AOT on windows. * Fix memory management of __cuda_array_interface__ views. * Fix typo in error name. * Fix the default unboxing logic * Allow non-global reference to objmode() context-manager * Fix global reference in objmode for dynamically created function * CUDA_ERROR_MISALIGNED_ADDRESS Using Multiple Const Arrays * Correctly handle very old versions of colorama * Add 32bit package guard for non-32bit installs * Fix with-objmode warning * Fix label offset in call inline after parfor pass * Fixes raising of user defined exceptions for exec(<string>). * Fix error due to function naming in CI in py2.7 * Fixed TBB's single thread execution and test added for * Allow matching non-array objects in find_callname() * Change getiter and iternext to not be pure. * Make ir.UndefinedType singleton class. * Fix np.random.shuffle sideeffect * Raise unsupported for kwargs given to `print()` * Remove dead script. * Fix stencil support for boolean as return type * Fix handling make_function literals * Add missing unicode != unicode * Fix complex math sqrt implementation for large -ve values * This adds arg an check for the pattern supplied to Parfors. * Sets list dtor linkage to `linkonce_odr` to fix visibility in AOT Documentation Updates: * Update 0.40 changelog with additional PRs * Tweak spacing to avoid search box wrapping onto second line * Add note about memory leaks with exceptions to docs. * Add FAQ on CUDA + fork issue. * Update docs for argsort, kind kwarg partially supported. * Added mention of njit in 5minguide.rst * Fix parallel reduction example in docs. * Fix broken link and mark up problem. * Size Numba logo in docs in em units. * just two typos * Document string support * Documentation for parallel diagnostics.
2018-12-09revbump after updating textproc/icuadam2-4/+4
2018-12-04py-roman: updated to 3.1adam2-7/+7
3.1: - Added support for Python 3.7.
2018-12-03py-lmfit: updated to 0.9.12adam2-7/+7
Version 0.9.12 Release Notes New features: - SkewedVoigtModel was added as built-in model - Parameter uncertainties and correlations are reported for least_squares - Plotting of complex-valued models is now handled in ModelResult class - A model's independent variable is allowed to be an object - Added usersyms to Parameters() initialization to make it easier to add custom functions and symbols - the numdifftools package can be used to calculate parameter uncertainties and correlations for all solvers that do not natively support this - emcee can now be used as method keyword-argument to Minimizer.minimize and minimize function, which allows for using emcee in the Model class (Bug)fixes: - asteval errors are now flushed after raising - max_time and evaluation time for ExpressionModel increased to 1 hour - loading a saved ModelResult now restores all attributes - development versions of scipy and emcee are now supported - ModelResult.eval() do no longer overwrite the userkws dictionary - running the test suite requires pytest only - improved FWHM calculation for VoigtModel
2018-12-02nickle: update to 2.84.wiz4-21/+32
Bump to version 2.84 Construct a separate case for lexing '0' from other octal numbers This avoids needing code to identify this case within the octal number token generation code. Ignore '_' within numbers so it can be used as a separator Adopted from languages like Rust where this can be used to group digits in thousands for base-10 or power of two for base 2,8,16 to make them easier to read. 123_456_789 = 123456789 0xafff_1212 = 0xafff1212 The patch makes both the lexer and string conversions support this. Add array initalizer tests Ignore SIGTTOU/SIGTTIN. Adjust TSTP processing When run as other than the master of a process group, nickle may not get all of its work done before the controlling shell takes over the tty and resets that control group. This means that any processing of terminal parameters may generate SIGTTOU/SIGTTIN signals, which end up re-entering the stop function and causing general chaos. Only SIG_IGN appears to appease the kernel into dealing with this case correctly. Make assignments to stdin/stdout/stderr affect C code Use values of these variables in the C code. Allow repeat initializers in implicit sized arrays for small dimensions When initializing an implicitly sized multi-dimensional array, permit repeat initializers ("...") to be used to fill out smaller dimensions. This is done by requiring that the maximum number of elements in each dimension be taken from an initalizer without a repeat element. This also requires allowing repeat initializers to be useful for resizable arrays, which required a change to the execution machinery as well. Remove incorrect tree walking in CompileSizeDimensions CompileSizeDimensions was incorrectly interpreting the tree structure for bare value nodes -- it is either passed an ARRAY, or a single expression value, which can either be a comprehension, an empty initializer or a simple expression. The simple expression case was incorrectly looking for a '...' element to the left, which cannot happen. It further recursed if it hadn't reached the end of the dimensions, which is pointless as that case will generate an error when the initializers are compiled later. Debian-bug: #911926 Bump to version 2.83 debian: Run CI tests from installed location (/usr/share/nickle/test) Install tests so they can be run later debian: Bump standards-version to 4.2.1 Sign tarfiles. Check signature in debian/watch file. debian: Add autopkgtest CI script debian: Depend on debhelper version 11 debian: Add debian/watch file Check to make sure debian package is up-to-date with upstream version. debian: Add hardening flag to debian/rules debian: Make debian/copyright conform to standard copyright-format debian: Add Homepage entry in debian/control debian: Bump compat to 11 debian: Remove trailing whitespace from debian/changelog test: Remove spurious printf in check_exp test Spelling fixes in nickle.1.in expresion → expression formating → formatting Add AC_SYS_LARGEFILE to configure.ac This ensures that the correct macros to get large file support enabled are included in the config.h file. Include debian/source/format in tarball The tarball is used to build the debian package and without this file the resulting bits have a lintian warning. Update to version 2.82 Add .gitignore and .dir-locals.el files Add tests for exp/log which cover a range of precisions These check log and exp with mathematical identities to see if they produce reasonable results at a range of precisions. Add Math::e_value. Fix exp and log precision error. e_value computes e to any desired precision. exp was incorrectly truncating the value just before the last computation step, which caused it to lose significant precision. log was range-reducing to 0-1 instead of 2-3, which put it outside the range of rapid convergence. It also needed another newtons method iteration step. Use mktime instead of timelocal timelocal is a glibc alias for mktime and isn't provided by the musl C library.
2018-12-01gnumeric: update to 1.12.44.wiz2-8/+7
Gnumeric 1.12.44 Jean: * Fix document properties types. [#367] * Call pygobject_init() if needed. [#368] Morten: * Fix SWITCH's default argument. [#354] * Fix problem with setting auto-func. [#357] * Fix problem reading really old xls format. * Fix sheet filter problem. [#359] * New NT_RADICAL function. * Fix conditional style crash. * Fix applix locale problem. [#362] * Fix applix encoding and escape problems. [#363] * New LAMBERTW function. * Plug sheet object leak with paste. * Fix documentation problem for vararg functions.
2018-11-30py-networkx: updated to 2.2adam4-107/+114
2.2: This release is the result of 8 months of work with over 149 commits by 58 contributors. Highlights include: - Add support for Python 3.7. This is the last release to support Python 2. - Uniform random number generator (RNG) handling which defaults to global RNGs but allows specification of a single RNG for all random numbers in NX. - Improved GraphViews to ease subclassing and remove cyclic references which caused trouble with deepcopy and pickle. - New Graph method `G.update(H)`
2018-11-29Revbump for libcanberra gstreamer change.prlw11-2/+2
2018-11-28Removed obsolete patch from math/ocaml-zarithjaapb1-14/+0
2018-11-28Updated package math/ocaml-zarith to version 1.7.jaapb4-18/+19
Changes include: mostly bugfixes, plus improvements to the build system and minor enhancements.
2018-11-20py-patsy: updated to 0.5.1adam2-10/+9
v0.5.1 * The Python 3.6.7 and 3.7.1 point releases changed the standard tokenizer module in a way that broke patsy. Updated patsy to work with these point releases.
2018-11-14Revbump after cairo 1.16.0 update.kleink20-40/+40
2018-11-14py-simpleeval: updated to 0.9.8adam2-7/+7
0.9.8: Unknown changes
2018-11-13py-scikit-image: update to 0.14.1markd3-24/+50
This release contains the following changes from 0.14.0: Enhancements * "Reflect" mode in transforms now works fine when an image dimension has size 1 * img_as_float now allows single-precision (32-bit) float arrays to pass through unmodified, rather than being up-converted to 64-bit * Speed up rgb2gray computation * The scikit-image viewer now works with different PyQt versions * The cycle_spin function for enhanced denoising works single-threaded when dask is not installed now * scikit-image's io module will no longer inadvertently set the matplotlib backend when imported * Fix deprecated get keyword from dask in favor of scheduler * Add missing cval parameter to threshold_local API changes * Remove deprecated dynamic_range in measure.compare_psnr 0.14.0 New Features * Lookfor function to search across the library: skimage.lookfor. * nD support for skimage.transform.rescale, skimage.transform.resize, and skimage.transform.pyramid_* transforms. * Chan-Vese segmentation algorithm. * Manual segmentation with matplotlib for fast data annotation: skimage.future.manual_polygon_segmentation, skimage.future.manual_lasso_segmentation. * Hysteresis thresholding: skimage.filters.apply_hysteresis_threshold. * Segmentation with morphological snakes: skimage.segmentation.morphological_chan_vese (2D), skimage.segmentation.morphological_geodesic_active_contour (2D and 3D). * nD support for image moments: skimage.measure.moments_central, skimage.measure.moments_central, skimage.measure.moments_normalized, skimage.measure.moments_hu. This change leads to 3D/nD compatibility for many regionprops. * Image moments from coordinate input: skimage.measure.moments_coords, skimage.measure.moments_coords_central. * Added 3D support to blob_dog and blob_log. * Inertia tensor and its eigenvalues can now be computed outside of regionprops; available in skimage.measure.inertia_tensor. * Cycle-spinning function for approximating shift-invariance by averaging results from a series of spatial shifts: skimage.restoration.cycle_spin. * Haar-like feature: skimage.feature.haar_like_feature, skimage.feature.haar_like_feature_coord, skimage.feature.draw_haar_like_feature. * Data generation with random_shapes function: skimage.draw.random_shapes. * Subset of LFW (Labeled Faces in the Wild) database: skimage.data.cbcl_face_database. * Fully reworked montage function (now with a better padding behavior): skimage.util.montage. * YDbDr colorspace conversion routines: skimage.color.rgb2ydbdr, skimage.color.ydbdr2rgb. Improvements * VisuShrink method for skimage.restoration.denoise_wavelet. * New max_ratio parameter for skimage.feature.match_descriptors. * skimage.transform.resize and skimage.transform.rescale have a new anti_aliasing option to avoid aliasing artifacts when down-sampling images. * Support for multichannel images for skimage.feature.hog. * Non-local means denoising (skimage.restoration.denoise_nl_means) has a new optional parameter, sigma, that can be used to specify the noise standard deviation. This enables noise-robust patch distance estimation. * New alignment parameter in skimage.feature.plot_matches. * New seed parameter in skimage.transform.probabilistic_hough_line. * Various performance improvements. API Changes * skimage.util.montage. namespace has been removed, and skimage.util.montage.montage2d function is now available as skimage.util.montage2d. * skimage.morphology.binary_erosion now uses True as border value, and is now consistent with skimage.morphology.erosion. Deprecations * freeimage plugin has been removed from skimage.io. * skimage.util.montage2d is deprecated and will be removed in 0.15. Use skimage.util.montage function instead. * skimage.novice is deprecated and will be removed in 0.16. * skimage.transform.resize and skimage.transform.rescale have a new anti_aliasing option that avoids aliasing artifacts when down-sampling images. This option will be enabled by default in 0.15. * regionprops will use row-column coordinates in 0.16. * skimage.morphology.remove_small_holes min_size argument is deprecated and will be removed in 0.16. Use area_threshold instead.
2018-11-12Revbumps associated with update of lang/ocaml.jaapb4-8/+8
2018-11-12*: Add CTF_SUPPORTED/CTF_FILES_SKIP where necessary.jperkin1-1/+4
2018-11-12Recursive revbump from hardbuzz-2.1.1ryoon20-39/+40
2018-11-10Update to 1.13wen2-8/+7
Upstream changes: 1.13 30 Oct 2018 - Add function pl_translate(), by request. - Turn README into README.md. With MetaCPAN replacing CPAN, there is no reason to have a plain-text README anymore (MetaCPAN doesn't treat the file as special). - Add a CONTRIBUTING.md file, which is becoming a thing. - New test file for pl_translate(), and upgrade test files that for some reason were still using Test::Simple to Test::More. - Added an :all tag. Why not.
2018-11-10Update to 3.0702wen2-8/+7
Upstream changes: 3.0702 2018-10-25 - Rephrase some lacking phrasing in the docs. - https://github.com/shlomif/perl-Statistics-Descriptive/issues/5 - Thanks to @melak .
2018-11-05py-numpy: updated to 1.15.4adam2-7/+7
NumPy 1.15.4: This is a bugfix release for bugs and regressions reported following the 1.15.3 release. The Python versions supported by this release are 2.7, 3.4-3.7. The wheels are linked with OpenBLAS v0.3.0, which should fix some of the linalg problems reported for NumPy 1.14.
2018-11-04Revbump all Go packages after go111 update.bsiegert2-3/+4
2018-10-31py-numpy: updated to 1.15.3adam2-7/+7
NumPy 1.15.3: This is a bugfix release for bugs and regressions reported following the 1.15.2 release. The Python versions supported by this release are 2.7, 3.4-3.7. The wheels are linked with OpenBLAS v0.3.0, which should fix some of the linalg problems reported for NumPy 1.14.
2018-10-25math/libsvm: Fix install_name on Darwinminskim1-1/+11
2018-10-24*: (belatedly) revbump for net/libsoup updateleot1-2/+2
Thanks to <wiz>!
2018-10-20Update to 1.999815wen2-8/+7
Upstream changes: 1.999815 2018-10-19 * Move bitwise operators signed and, signed or, and signed xor from lib/Math/BigInt/CalcEmu.pm into lib/Math/BigInt/Lib.pm. The file lib/Math/BigInt/CalcEmu.pm is no longer needed and thus removed. 1.999814 2018-10-01 * Add to_base() and from_base() to Math::BigInt and corresponding library methods _to_base() and _from_base() to Math::BigInt::Lib. This was inspired by CPAN RT #122681. * Fix Makefile.PL to reflect that Test::More is only needed for testing, not for building. * In the documentation for each of the to_(bin|hex|oct|bytes) methods, add a reference to the corresponding from_(bin|hex|oct|bytes) method.
2018-10-11py-asteval: updated to 0.9.13adam2-7/+7
0.9.13: Bug fixes.
2018-10-07py-powerlaw: updated to 1.4.5adam3-10/+14
1.4.5: Unknown changes
2018-10-02math/py-scikit-learn: Update to 0.20.0minskim3-64/+277
Highlights: Missing values in features, represented by NaNs, are now accepted in column-wise preprocessing such as scalers. Each feature is fitted disregarding NaNs, and data containing NaNs can be transformed. The new impute module provides estimators for learning despite missing data. ColumnTransformer handles the case where different features or columns of a pandas.DataFrame need different preprocessing. String or pandas Categorical columns can now be encoded with OneHotEncoder or OrdinalEncoder. TransformedTargetRegressor helps when the regression target needs to be transformed to be modeled. PowerTransformer and KBinsDiscretizer join QuantileTransformer as non-linear transformations. Added sample_weight support to several estimators (including KMeans, BayesianRidge and KernelDensity) and improved stopping criteria in others (including MLPRegressor, GradientBoostingRegressor and SGDRegressor). This release is also the first to be accompanied by a Glossary of Common Terms and API Elements.
2018-10-02gsl: updated to 2.5adam3-9/+11
What is new in gsl-2.5: ** doc bug fix in binomial distribution figure ** added Wishart distribution ** added new module for digital filtering (gsl_filter); current filters include: Gaussian filter median filter recursive median filter impulse detection filter ** added new module for moving window statistics (gsl_movstat) ** added statistics functions: gsl_stats_median() gsl_stats_select() gsl_stats_mad() gsl_stats_mad0() gsl_stats_Sn_from_sorted_data() gsl_stats_Qn_from_sorted_data() gsl_stats_gastwirth_from_sorted_data() gsl_stats_trmean_from_sorted_data() ** added Romberg integration (gsl_integration_romberg) ** bug fix in deprecated functions gsl_multifit_wlinear_svd and gsl_multifit_wlinear_usvd ** documention corrected to state that gsl_sf_legendre functions do not include Condon-Shortley phase by default ** bug fix in exponential fitting example when using larger number of points ** changed internal workspace inside gsl_spmatrix to a union to avoid casting ** bug fixes in ode-initval2 for very rare solver crashing cases ** add histogram2d figure to manual (was missing in 2.4) ** bug fix in gsl_spmatrix_add for duplicate input arguments ** add support for negative arguments nu in gsl_sf_bessel_Jnu and gsl_sf_bessel_Ynu ** better texinfo documentation for gsl_sf_hyperg functions ** fix vector and matrix fread/fwrite testing on windows systems when tmpfile() fails ** fix for rstat/test.c on PPC64
2018-10-01z3: rlim_t fixes.jperkin2-1/+17
2018-09-30vowpal_wabbit: link network libs on SunOSwiedi1-1/+2