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2018-03-17math/ruby-spreadsheet: update to 1.1.7taca2-7/+7
### 1.1.7 / 15.03.2018 commit 34ece5f4e7ab2907c4a8809d96ef2a33b7ccd4b5 Author: Maarten Brouwers <github@murb.nl> Date: Thu Mar 15 15:10:23 2018 +0100 * shadowing outer local variable - i * Running rake resulted in the following warning: `lib/spreadsheet/worksheet.rb:345: warning: shadowing outer local variable - i`; this patch fixes that.
2018-03-15Add py-claripykhorben1-1/+2
2018-03-15Import py-claripy version 7.8.2.21 from wipkhorben4-0/+210
Claripy is an abstracted constraint-solving wrapper. It is maintained by the angr organization on GitHub. General usage is similar to z3.
2018-03-14math/ruby-spreadsheet: update to 1.1.6taca2-7/+7
### 1.1.6 / 12.03.2018 Author: Todd Hambley <thambley@travelleaders.com> Date: Mon Mar 12 14:20:39 2018 -0400 * fix reject for ruby 1.8.7 * fix using invalid code pages when writing workbook ### 1.1.5 / 20.11.2017 Author: Paco Guzmán <pacoguzman@users.noreply.github.com> Date: Sun Nov 19 18:10:57 2017 +0100 * Avoid creating a class variable, that variable cannot be garbage collected and it retains a lot of memory
2018-03-13Re-introduce support for NetBSD in src/util/scoped_timer.cppkhorben3-2/+63
I forgot to patch this part in the latest update; sorry. This has now been submitted upstream as well. Originally from dholland@. Compile-tested on NetBSD/amd64. Bump PKGREVISION.
2018-03-13py-numpy: updated to 1.14.2adam2-10/+9
1.14.2: This is a bugfix release for some bugs reported following the 1.14.1 release. The major problems dealt with are as follows. Residual bugs in the new array printing functionality. Regression resulting in a relocation problem with shared library. Improved PyPy compatibility.
2018-03-13Add py-z3khorben1-1/+2
2018-03-13Import a package for the Python bindings for math/z3khorben4-1/+55
2018-03-13Remove the references to wipkhorben2-7/+6
2018-03-13Update math/z3 to version 4.5.0khorben11-113/+304
From the release notes: New features: - New theories of strings and sequences. - Incremental consequence finder for finite domains. - CMake build system (thanks @delcypher). - Updated and improved OCaml API (thanks @martin-neuhaeusser). - Updated and improved Java API (thanks @cheshire). - New resource limit facilities to avoid non-deterministic timeout behaviour. - New bit-vector simplification and ackermannization tactics (thanks @MikolasJanota, @nunoplopes). - QSAT: a new solver for quantified arithmetic problems. See: Bjorner, Janota: Playing with Quantified Satisfaction, LPAR 2016. A multitude of bugs has been fixed. I am about to commit a separate package for the Python bindings. Coordinated with dholland@
2018-03-12Recursive bumps for fontconfig and libzip dependency changes.wiz33-64/+66
2018-03-11p5-Algorithm-BloomFilter: new packagemaya4-1/+25
Perl5 module that implements a simple bloom filter in C/XS
2018-03-11Requires ocaml-num with ocaml 4.06dholland1-1/+2
2018-03-09math/R-RcppEigen: Update to 0.3.3.4.0minskim2-10/+8
Changes: - Updated to version 3.3.4 of Eigen - Condition long long use on C++11. - Pragmas for g++ & clang to suppress diagnostics messages are disabled per CRAN Policy; use -Wno-ignored-attributes to quieten.
2018-03-08Remove dependencies unused if the Accelerate framework existsminskim1-1/+4
Bump PKGREVISION.
2018-03-07math/R: Add missing dependencies to buildlink3.mkminskim1-1/+5
2018-03-07math/R-nloptr: Use pkg-config to set link options properlyminskim1-1/+2
2018-03-06math/R: Use the Accelerate framework if it is availableminskim1-3/+9
This package was already using libblas from the Accelerate framework on Darwin through /usr/lib/libblas.dylib. This change makes it explicit and removes unnecessary dependencies on math/blas and math/lapack. Bump PKGREVISION.
2018-03-05math/Makefile: Add R-emdbookminskim1-1/+2
2018-03-05math/R-emdbook: Import version 1.3.9minskim3-0/+30
Auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists.
2018-03-05math/Makefile: Add R-bbmleminskim1-1/+2
2018-03-05math/R-bbmle: Import version 1.0.20minskim3-0/+29
Methods and functions for fitting maximum likelihood models in R. This package modifies and extends the 'mle' classes in the 'stats4' package.
2018-03-05math/Makefile: Add R-numDerivminskim1-1/+2
2018-03-05math/R-numDeriv: Import version 2016.8.1minskim3-0/+31
Methods for calculating (usually) accurate numerical first and second order derivatives. Accurate calculations are done using 'Richardson”s' extrapolation or, when applicable, a complex step derivative is available. A simple difference method is also provided. Simple difference is (usually) less accurate but is much quicker than 'Richardson”s' extrapolation and provides a useful cross-check. Methods are provided for real scalar and vector valued functions.
2018-03-04Revbump all Go packages after Go 1.10 update.bsiegert1-1/+2
2018-03-04math/Makefile: Add R-codaminskim1-1/+2
2018-03-04math/R-coda: Import version 0.19.1minskim3-0/+27
coda provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.
2018-03-03math/Makefile: Add R-poweRlawminskim1-1/+2
2018-03-03math/R-poweRlaw: Import version 0.70.1minskim3-0/+30
The poweRlaw package is an implementation of maximum likelihood estimators for a variety of heavy tailed distributions, including both the discrete and continuous power law distributions. Additionally, a goodness-of-fit based approach is used to estimate the lower cut-off for the scaling region.
2018-03-02math/Makefile: Add R-probminskim1-1/+2
2018-03-02math/R-prob: Import version 1.0.0minskim3-0/+34
A framework for performing elementary probability calculations on finite sample spaces, which may be represented by data frames or lists. Functionality includes setting up sample spaces, counting tools, defining probability spaces, performing set algebra, calculating probability and conditional probability, tools for simulation and checking the law of large numbers, adding random variables, and finding marginal distributions. Characteristic functions for all base R distributions are included.
2018-02-28math/R-DBI: Update to 0.7minskim2-7/+8
Notable changes since 0.3.1: - dbGetInfo() gains a default method. - New generic dbBind() for binding values to a parameterised query. - DBI gains a number of SQL generation functions. - dbDataType() maps character values to "TEXT" by default. - The default implementation of dbQuoteString() doesn’t call encodeString() anymore. - Deprecated dbDriver() and dbUnloadDriver(). - Import updated specs from DBItest. - Require R>=3.0.0.
2018-02-28math/pear-Numbers_Words: update to 0.18.2taca2-7/+7
0.18.2 2018-02-13 09:05 UTC Changelog: * PR #32: fix "count(): Parameter must be an array or an object that implements Countable" with PHP 7.2
2018-02-27z3: forbid python 3.xwiz1-1/+3
First complains about indentation problems, then about reading non-ASCII bytes.
2018-02-27py-lmfit: updated to 0.9.8adam3-11/+16
0.9.8: update doc for 5 digit-precision fit statistics increase default precision for chi-square, etc from 3 to 5
2018-02-25mpfr: force disable float128 on netbsd8 too (tested 8.0)maya1-2/+2
2018-02-23Add support for DESTDIRkhorben2-6/+18
Fix building math/z3 in privileged mode when not building as root: ocamlfind: Cannot mkdir /usr/pkg/lib/ocaml/site-lib/Z3: Permission denied This now uses the option -destdir when calling ocamlfind(1). It also includes a workaround for what might be a bug in ocamlfind(1), where it also wants to update ld.conf in spite of specifying -destdir. Tested on NetBSD/amd64. ok dholland@
2018-02-22py-numpy: updated to 1.14.1adam2-7/+7
NumPy 1.14.1 Release Notes This is a bugfix release for some problems reported following the 1.14.0 release. The major problems fixed are the following. Problems with the new array printing, particularly the printing of complex values, Please report any additional problems that may turn up. Problems with np.einsum due to the new optimized=True default. Some fixes for optimization have been applied and optimize=False is now the default. The sort order in np.unique when axis=<some-number> will now always be lexicographic in the subarray elements. In previous NumPy versions there was an optimization that could result in sorting the subarrays as unsigned byte strings. The change in 1.14.0 that multi-field indexing of structured arrays returns a view instead of a copy has been reverted but remains on track for NumPy 1.15. Affected users should read the 1.14.1 Numpy User Guide section "basics/structured arrays/accessing multiple fields" for advice on how to manage this transition.
2018-02-20Import Math::Int64 0.54 as math/p5-Math-Int64.fhajny4-1/+25
This module adds support for 64 bit integers, signed and unsigned, to Perl.
2018-02-19Expand a workaround for NetBSD/amd64 0-7 to non-amd64 architecturesryoon1-2/+2
2018-02-12math/Makefile: Add R-reshape2minskim1-1/+2
2018-02-12math/R-reshape2: Import version 1.4.3minskim3-0/+28
Flexibly restructure and aggregate data using just two functions: melt and 'dcast' (or 'acast').
2018-02-11mpfr: update to 4.0.1.wiz2-8/+7
Changes from version 4.0.0 to version 4.0.1: - Improved MPFR manual. - Improved __GMP_CC and __GMP_CFLAGS retrieval (in particular for MS Windows). - Fixed a build failure on some platforms when --with-gmp-build is used. - Bug fixes (see ChangeLog file), in particular in mpfr_div_ui, which could yield an incorrectly rounded result to nearest when using different precisions; this bug had been present since the introduction of mpfr_div_ui, and in MPFR 4.0.0, it was affecting mpfr_div too. - New: optional "make check-exported-symbols", mainly for the MPFR developers and binary distributions, to check that MPFR does not define symbols with a GMP reserved prefix (experimental).
2018-02-11gnumeric110: update HOMEPAGE.wiz1-2/+2
2018-02-11gnumeric: update HOMEPAGE.wiz1-2/+2
2018-02-09math/R-XML: Update to 3.89.1.9minskim2-7/+7
Bug fixes only.
2018-02-07math/Makefile: Add R-gtableminskim1-1/+2
2018-02-07math/R-gtable: Import version 0.2.0minskim3-0/+25
Tools to make it easier to work with "tables" of 'grobs'.
2018-02-07math/Makefile: Add R-fracdiffminskim1-1/+2
2018-02-07math/R-fracdiff: Import version 1.4.2minskim3-0/+26
Maximum likelihood estimation of the parameters of a fractionally differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl. Statistics, 1989).
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