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2015-08-29If you want eukleides10 to be picked up, you should also place an upperjoerg1-4/+3
limit. Drop redundant PKGNAME.
2015-08-25Add py-simpleevalrichard5-1/+34
A quick single-file MIT-Licenced library for easily adding evaluatable expressions into python projects. Say you want to allow a user to set an alarm volume, which could depend on the time of day, alarm level, how many previous alarms had gone off, and if there is music playing at the time. Or if you want to allow simple formulae in a web application, but don't want to give full eval() access, or don't want to run in javascript on the client side. It's deliberately very simple, just a single file you can dump into a project, or import from pypi (pip or easy_install). Internally, it's using the amazing python ast module to parse the expression, which allows very fine control of what is and isn't allowed. It should be completely safe in terms of what operations can be performed by the expression. The only issue I know to be aware of is that you can create an expression which takes a long time to evaluate, or which evaluating requires an awful lot of memory, which leaves the potential for DOS attacks. There is basic protection against this, and you can lock it down further if you desire. You should be aware of this when deploying in a public setting. The defaults are pretty locked down and basic, and it's very easy to add whatever extra specific functionality you need (your own functions, variable/name lookup, etc).
2015-08-18Bump all packages that depend on curses.bui* or terminfo.bui* since theywiz13-24/+26
might incur ncurses dependencies on some platforms, and ncurses just bumped its shlib. Some packages were bumped twice now, sorry for that.
2015-08-17Bump PKGREVISION for ncurses shlib bump.wiz7-13/+14
2015-08-14Update to 3.2.2wen4-50/+43
Upstream changes: CHANGES IN R 3.2.2: SIGNIFICANT USER-VISIBLE CHANGES: * It is now easier to use secure downloads from https:// URLs on builds which support them: no longer do non-default options need to be selected to do so. In particular, packages can be installed from repositories which offer https:// URLs, and those listed by setRepositories() now do so (for some of their mirrors). Support for https:// URLs is available on Windows, and on other platforms if support for libcurl was compiled in and if that supports the https protocol (system installations can be expected to do). So https:// support can be expected except on rather old OSes (an example being OS X 'Snow Leopard', where a non-system version of libcurl can be used). (Windows only) The default method for accessing URLs _via_ download.file() and url() has been changed to be "wininet" using Windows API calls. This changes the way proxies need to be set and security settings made: there have been some reports of sites being inaccessible under the new default method (but the previous methods remain available). NEW FEATURES: * cmdscale() gets new option list. for increased flexibility when a list should be returned. * configure now supports texinfo version 6.0, which (unlike the change from 4.x to 5.0) is a minor update. (Wish of PR#16456.) * (Non-Windows only) download.file() with default method = "auto" now chooses "libcurl" if that is available and a https:// or ftps:// URL is used. * (Windows only) setInternet2(TRUE) is now the default. The command-line option --internet2 and environment variable R_WIN_INTERNET2 are now ignored. Thus by default the "internal" method for download.file() and url() uses the "wininet" method: to revert to the previous default use setInternet2(FALSE). This means that https:// can be read by default by download.file() (they have been readable by file() and url() since R 3.2.0). There are implications for how proxies need to be set (see ?download.file): also, cacheOK = FALSE is not supported. * chooseCRANmirror() and chooseBioCmirror() now offer HTTPS mirrors in preference to HTTP mirrors. This changes the interpretation of their ind arguments: see their help pages. * capture.output() gets optional arguments type and split to pass to sink(), and hence can be used to capture messages. C-LEVEL FACILITIES: * Header Rconfig.h now defines HAVE_ALLOCA_H if the platform has the alloca.h header (it is needed to define alloca on Solaris and AIX, at least: see 'Writing R Extensions' for how to use it). INSTALLATION and INCLUDED SOFTWARE: * The libtool script generated by configure has been modified to support FreeBSD >= 10 (PR#16410). BUG FIXES: * The HTML help page links to demo code failed due to a change in R 3.2.0. (PR#16432) * If the na.action argument was used in model.frame(), the original data could be modified. (PR#16436) * getGraphicsEvent() could cause a crash if a graphics window was closed while it was in use. (PR#16438) * matrix(x, nr, nc, byrow = TRUE) failed if x was an object of type "expression". * strptime() could overflow the allocated storage on the C stack when the timezone had a non-standard format much longer than the standard formats. (Part of PR#16328.) * options(OutDec = s) now signals a warning (which will become an error in the future) when s is not a string with exactly one character, as that has been a documented requirement. * prettyNum() gains a new option input.d.mark which together with other changes, e.g., the default for decimal.mark, fixes some format()ting variants with non-default getOption("OutDec") such as in PR#16411. * download.packages() failed for type equal to either "both" or "binary". (Reported by Dan Tenenbaum.) * The dendrogram method of labels() is much more efficient for large dendrograms, now using rapply(). (Comment #15 of PR#15215) * The "port" algorithm of nls() could give spurious errors. (Reported by Radford Neal.) * Reference classes that inherited from reference classes in another package could invalidate methods of the inherited class. Fixing this requires adding the ability for methods to be "external", with the object supplied explicitly as the first argument, named .self. See "Inter-Package Superclasses" in the documentation. * readBin() could fail on the SPARC architecture due to alignment issues. (Reported by Radford Neal.) * qt(*, df=Inf, ncp=.) now uses the natural qnorm() limit instead of returning NaN. (PR#16475) * Auto-printing of S3 and S4 values now searches for print() in the base namespace and show() in the methods namespace instead of searching the global environment. * polym() gains a coefs = NULL argument and returns class "poly" just like poly() which gets a new simple=FALSE option. They now lead to correct predict()ions, e.g., on subsets of the original data. * rhyper(nn, <large>) now works correctly. (PR#16489) * ttkimage() did not (and could not) work so was removed. Ditto for tkimage.cget() and tkimage.configure(). Added two Ttk widgets and missing subcommands for Tk's image command: ttkscale(), ttkspinbox(), tkimage.delete(), tkimage.height(), tkimage.inuse(), tkimage.type(), tkimage.types(), tkimage.width(). (PR#15372, PR#16450) * getClass("foo") now also returns a class definition when it is found in the cache more than once.
2015-08-13Update gnumeric to version 1.12.23.he3-8/+10
Pkgsrc changes: * Adjust PLIST. * Bump version number. * Depend on newer version of goffice0.10. Upstream changes: gnumeric 1.12.23: Noteworthy news in this release: * Fuzzed file hardening. * Solver refactoring. Special thanks to Juha Kylmänen from Oulu University Secure Programming Group for running a large amount of fuzzing against Gnumeric. gnumeric 1.12.22: Noteworthy news in this release: * Graph fixes and improvements. * Test suite improvements. * ODF/XLSX import and export fixes. * A schema for the ODF files we produce. As part of our testing we check that the ODF, XLSX, and Gnumeric files we produce are valid according to the relevant xml schema. * For Gnumeric files we provide the schema. * For XLSX there is an official schema which we use with a few fixes so Excel can read our files. (We consider the format to be defined by what XLSX writes.) * For ODS the situation is more problematic. We appear to be the first to release a schema for the ODS files we produce. That is mildly shocking -- several spreadsheets have ODS as their primary format, yet no-one seem to be validating the files they produce! There is an official schema for the format without extensions which is fine, except that no-one uses that format because there are lots of fairly basic things that cannot be expressed in the format without extensions.
2015-08-12Update to FriCAS 1.2.6asau3-38/+20
Changse 1.2.6: - Eigenvalues can be computed over larger range of base fields. - Common denomiantor package handles now multivariate polynomials. - More uniform break (error) handling. Bug fixes, in particular: - 'distribute' handles 'box' operator. - Fixed problem with guessing over multivariate polynomilas. - Fixed hashcode handling for Void in Aldor.
2015-08-10PR 45271 Joern Clausen: remove old Solaris PIC-related substitutiondholland2-3/+13
that nowadays breaks the build.
2015-08-10Update to FriCAS 1.2.5asau4-1339/+2680
Changes in FriCAS 1.2.5: - Fixed printing of scripted symbols. - Fixed 'totalDegreeSorted' (affected Groebner bases). - Fixed few problems with Hensel lifting (including SF bug 47). - Fixed 'series' in UnivariateLaurentSeriesConstructor. - Fixed 'order' in SparseUnivariatePowerSeries. - Printing of series now respect 'showall' setting, cyclic series are detected. - Fixed problem with interpreter preferring Union to base type. Changes in FriCAS 1.2.4: - New cylindrical decomposition package. - New GnuDraw package for plotting via gnuplot. - Texmacs interface now handles Cork symbols. - Added double precision versions of several special functions (needed for plotting). - Nopile mode for Spad is changed to be more convenient. - 'stringMatch' is removed (was broken beyond repair). Bug fixes, in particular: - Fixed intepreter assignment to parts of nested aggregates (issue 376). - Fixed interpreter coercion from Equation to Boolean (issue 359). - Fix printing of '\%i' in types (issue 132). - Disabled incorrect shortcut during coercion (issue 29). - Difference of intervals now agrees with definition as interval operation. - Avoid overwriting loop limit and increment. - Fix a polynomial gcd failure due to bad reduction. - Avoid mangling unevaluated algebraic integrals. - Fix integration of unevaluated derivatives. - Restore parser handling of '\\/' and '/\\'. - Properly escape strings and symbols in TeXFormat. Changes in FriCAS 1.2.3: - Fixed pattern matching using '%i' in patterns. - Fixed ')display op coerce'. - Fixed ')version' command. - Fixed crash when printing '%'. - Fix a buffer overflow in HyperDoc. - Fixed HyperDoc errors in 'Dependants' and 'Users'. - HyperDoc browser better handles constructors with parameters. Changes in FriCAS 1.2.2: - Improvements to 'integrate': better handling of algebraic integrals, new routine which handles some integrals contaning 'lambertW'. - Improvements to 'limit', now Gruntz algorithm knows about a few tractable functions. - Smith form of sparse integer matrices is now much more efficient. - Generalized indexing for two dimensional arrays. - Pile/nopile mode is now restored after ')read' or ')compile'. Piling rules now accept some forms of multiline lists. - Eliminated version checking in generated code. Note: this change means that Spad code compiled by earlier FriCAS versions will not run in FriCAS 1.2.2. - Updated Aldor interface to work with free Aldor. Bug fixes, in particular: - Interpreter can now handle complicated mutually recursive functions. - Spad compiler should now correctly handle 'has' inside a function. - Fixed derivatives of Whittaker functions. Changes in FriCAS 1.2.1: -- Support for building Mac OS application bundle. Bug fixes, in particular: -- fixed few cases of wrong or unevaluated integrals. -- better zero test during limit computation avoids division by zero. -- fixed buffer overflow problems in view3D. -- 'reducedSystem' on empty input returns basis of correct size.
2015-08-07Recursive revbump associated with lang/ocaml update.jaapb1-2/+2
2015-08-07Update to 0.3.1wen2-6/+6
Upstream changes: # Version 0.3.1 * Actually export `dbIsValid()` :/ * `dbGetQuery()` uses `dbFetch()` in the default implementation. # Version 0.3.0 ## New and enhanced generics * `dbIsValid()` returns a logical value describing whether a connection or result set (or other object) is still valid. (#12). * `dbQuoteString()` and `dbQuoteIdentifier()` to implement database specific quoting mechanisms. * `dbFetch()` added as alias to `fetch()` to provide consistent name. Implementers should define methods for both `fetch()` and `dbFetch()` until `fetch()` is deprecated in 2015. For now, the default method for `dbFetch()` calls `fetch()`. * `dbBegin()` begins a transaction (#17). If not supported, DB specific methods should throw an error (as should `dbCommit()` and `dbRollback()`). ## New default methods * `dbGetStatement()`, `dbGetRowsAffected()`, `dbHasCompleted()`, and `dbGetRowCount()` gain default methods that extract the appropriate elements from `dbGetInfo()`. This means that most drivers should no longer need to implement these methods (#13). * `dbGetQuery()` gains a default method for `DBIConnection` which uses `dbSendQuery()`, `fetch()` and `dbClearResult()`. ## Deprecated features * The following functions are soft-deprecated. They are going away, and developers who use the DBI should begin preparing. The formal deprecation process will begin in July 2015, where these function will emit warnings on use. * `fetch()` is replaced by `dbFetch()`. * `make.db.names()`, `isSQLKeyword()` and `SQLKeywords()`: a black list based approach is fundamentally flawed; instead quote strings and identifiers with `dbQuoteIdentifier()` and `dbQuoteString()`. * `dbGetDBIVersion()` is deprecated since it's now just a thin wrapper around `packageVersion("DBI")`. * `dbSetDataMappings()` (#9) and `dbCallProc()` (#7) are deprecated as no implementations were ever provided. ## Other improvements * `dbiCheckCompliance()` makes it easier for implementors to check that their package is in compliance with the DBI specification. * All examples now use the RSQLite package so that you can easily try out the code samples (#4). * `dbDriver()` gains a more effective search mechanism that doesn't rely on packages being loaded (#1). * DBI has been converted to use roxygen2 for documentation, and now most functions have their own documentation files. I would love your feedback on how we could make the documentation better!
2015-08-06add p5-Math-Base-Convertwen1-1/+2
2015-08-06Import Math-Base-Convert-0.08 as math/p5-Math-Base-Convert.wen3-0/+26
This module provides fast functions and methods to convert between arbitrary number bases from 2 (binary) thru 65535. This module is pure Perl, has no external dependencies, and is backward compatible with old versions of Perl 5.
2015-08-05Point out when the latest update was, and that there's a newerhe2-0/+6
version in gnumeric112 (and gnumeric110 for gnumeric).
2015-08-05Update to version 1.12.21.he5-18/+24
Pkgsrc changes: * Modify license to dual either gpl2 or gpl3. * Adjust BUILDLINK_API_DEPENDS settings from configure.ac. * Adjust PLIST to files now installed. * Add comments to the existing patches. Upstream notable changes (see ChangeLog in source for details): gnumeric 1.12.21: * ODS import/export fixes * XLSX import/export fixes gnumeric 1.12.20: * ODF import/export fixes and enhancements. * XLSX import/export fixes and enhancements. gnumeric 1.12.19: * (no noteworthy major changes) gnumeric 1.12.18: * Workaround gtk+ api/abi breaks. gnumeric 1.12.17: * xlsx import/export improvements. gnumeric 1.12.16: * ODS import/export improvements gnumeric 1.12.15: * ods/xlsx graph import fixes * ods import/export fixes gnumeric 1.12.14: * Many fixes related to conditional formats. * Try to disable Ubuntu's non-working scroll bars. gnumeric 1.12.13: * ods import/export export fixes. * xls import/export export fixes. gnumeric 1.12.12: * Test suite improvements. * ods import/export improvements * xls import/export improvements * xlsx import/export improvements gnumeric 1.12.11: * A problem with saving to Excel97 format was fixed. gnumeric 1.12.10: * Accuracy improvements * Work around gtk+ abi breaks * Win32 improvements
2015-08-05Update to 5.36.1ryoon3-21/+508
* Use gmake to fix build. Changelog: Changes in Release 5.36.1 This is a bug-fix minor release. To see the changes in the major release 5.36, read the Maxima 5.36 change log Bugs fixed Bug 2936: Stack overflow in integrate. Bugs in the draw package. Problem in loading wxm files from the Explorer in Wxmaxima. Maxima 5.36 change log New items in core: function parse_timedate: parse time/date string New items in share: function lll: Lenstra-Lenstra-Lovasz algorithm Changes in core: at: remove variables in simplification Other changes: package contrib_ode: update test suite package ezunits: additional femto, pico, nano, and micro fractions package ezunits: apply rules more aggressively package maxima-odesolve: documentation package gentran: update package draw: geometric transformations for 2D implicit functions package coma: new version package maximaMathML: hook mechanism package noninteractive: new script expand_branches.mac Bug fixes: [#2924]: Maxima fails to run on lisp interpreters [#2922]: input '20log(x)' causes strange error [#2919]: Definite integration broken: integrate(1/(x^2), x, -inf, inf) gives zero [#2913]: trigrat crashes with variable name "e" [#2907]: ratsubst(z, sin(x + 1), 0) crashes when radsubstflag = true [#2898]: limit of continuous --> und [#2892]: julia() and mandelbrot() creates maxout.gnuplot in different place than plot2d()/plot3d() [#2883]: load (lsquares); Error [#2881]: quad_qags recently got problems evaluating erf [#2878]: Installing from maxima-5.35.1.tar.gz requires Makeinfo [#2873]: implicit_plot does not accept symbolic ranges [#2865]: Use exp as a list [#2862]: Incorrect result for integrate(u/(u+1)^2,u,0,inf); [#2854]: Integral hangs with domain:complex [#2853]: abs_integrate hangs after encountering log(0) Unnumbered bugs: mailing list 2015-03-16: Requesting advice on simplification rules for user-defined operators mailing list 2015-02-09: save(..) can't save syntax extensions in a readable form mailing list 2015-02-16: expand phenomenon mailing list 2015-02-08: Newbie lisp question mailing list 2015-01-22: Matrix inversion with detout = true? mailing list 2015-01-09: Problem loading package COMA mailing list 2015-01-05: order of operands is changed due to source information commit [b0a9ab]: Fix jacobi_sc(elliptic_kc(m)/2,m) commit [ff92d9]: Fix make_elliptic_f for inverse_jacobi_ns and inverse_jacobi_nc commit [b7dc04]: Added device info to paths in cl-info::*info-tables* commit [95c186]: Fixes a bug in the style option parser commit [bf9a67]: Correct the derivative of bessel_y wrt order: diff(bessel_y(v,z),v) commit [0d8d8a]: Handle the (finite) geometric sums with quotient 1. commit [b3cffd]: Fix bug controlling non numeric symbols in explicit commit [114860]: Add device to maxima-load-pathname-directory. commit [72d617]: Fix maxima -s PORT command. Maxima 5.35 change log New items in core: * in evaluation, allow general expressions as operators New items in share: * package Eulix: numerical solution of ordinary differential equations * script hermite_reduce.mac: implement Rothstein-Trager algorithm Changes in core: * function supcontext: evaluate argument(s) * functions supcontext, newcontext: return made-up name if none supplied * function powerseries: bug fixes Other changes: * many updates to documentation Bug fixes: #2847: limits of powers of constants #2845: Avoid initialization-time compile in commac.lisp #2818: Problem with trigreduce #2816: Significant reduction in processing LaTeX output in imaxima in new version #2815: abs_integrate leads to infinite recursion #2814: abs_integrate: integration of x*ceiling(x) #2800: a typo in mode_identity documentation #2774: desolve doesn't know how to interpret temporary variables #2623: shortest_path #2575: Integration error: integrate(sqrt(k-k*cos(2*x)), x) #2371: limit((exp(a*x)-1)/(exp(a*x)+1),x,inf) fails unnumbered bugs: mailing list 2014-11-26: Error in histogram and continuous_freq mailing list 2014-09-01: SIGN1 strangeness, was: Problem with bfloat Maxima 5.34 change log New items in core: * function invert_by_gausselim: invert by Gaussian elimination (used to be function invertmx) * function invert_by_adjoint: invert by adjoint method (used to be function invert) * functions push, pop: now implemented in core New items in share: * package coma: functions for control engineering * function sha1sum (package stringproc): compute SHA1 hash * engineering-format.lisp: change default float display format Changes in core: * function invert: use adjoint method or Gaussian elimination depending on size of matrix * function tex: Define TeX properties for gamma_incomplete and friends Bug fixes: #2785: dynamics package: plotting fails on evolution() and other functions #2784: Ceiling gives error, without even an error message #2782: realroots(x*y) internal error #2776: Error when integrate sqrt #2775: powerseries of some log expressions #2772: powerseries of some trig expressions #2768: "notequal" tries to put multiprecision rational numbers into floats #2765: powerseries of a derivative #2764: power series of 1 + x^n and regression tests in rtest16.mac #2763: symmetricp(matrix) DOEs not work #2760: powerseries at infinty broken #2755: powerseries of natural exponential #2751: powerseries of bessel functions needlessly fail #2750: powerseries(x^x,x,0) gives Lisp error #2749: Float evaluation of sinh causes Lisp error instead of overflowing to bigfloat #2746: scifac / gcfac crash #2745: limit with numer:true #2741: imaxima preamble broken for display in emacs #2738: Integrate encountered a Lisp error: The value 2 is not of type LIST #2732: wrong answer for similar to gaussian integral #2726: integrate produces wrong answer for Gaussian Moments #2725: pochhammer(n,x) documentation #2721: maxima can't refresh plots in gnuplot_pipes format #2719: Matrix invert() behaviour #2718: imaxima LaTeX definitions conflict with amsmath #2717: plot2d treats linear and log plots inconsistently #2716: is allows more than one argument #2711: `i' is not local in `geosum' #2710: `rempart' from package `functs' fails #2707: `rowp' fails if `p' function is defined #2697: Inconsistent handling of Greek symbols #2683: Plot2d default terminal broken #2678: transform_xy rejects argument constructed with make_transform #2677: [gnuplot_pm3d,false] does not disable pm3d #2621: "gamma limit error" #2526: abs_integrate fails on integrate(sqrt(x + sqrt(x)), x) unnumbered bugs: mailing list 2014-08-16: bind stack overflow in loop mailing list 2014-07-01: "rtest8.mac test failure" mailing list 2014-06-29: "rule issue" limit((atan(x)-(%pi/2))/(sin(10/x)),x,inf) ezgcd(p1,p2,...) => true when ratp returns true for any argument Maxima 5.33 change log New items in share: * package alt-display: hook for nonstandard display functions * package kovacicODE: Kovacic method for ordinary differential equations * package odes: several methods for ordinary differential equations * package trigtools: manipulating trigonometric function expressions * package sound: functions for audio synthesis Changes in core: * promote result to bigfloat on floating point overflow * variables declared to be irrational are considered real * display floats with leading "0." instead of "." only * function tex: accepts Lisp objects now * functions expintegral_shi, expintegral_chi: limits * functions hankel_1, hankel_2: numerically evaluate when the order is complex * function declare: rational and irrational properties mutually exclusive * functions get, put: when first argument is a string, assume it is the name of an operator * functions round, truncate: handle arguments of zeroa and zerob * functions for Galois fields: improve power tables and introduce nth root * operator @: TeX property Other changes: * package ezunits: TeX property for units conversion operator * package maximaMathML: some updates * package draw: support for gnuplot terminal canvas * documentation: updating Brazilian Portuguese translation of user manual Bug fixes: * 2703: plotting option legend causes an error * 2702: plotting option adapt_depth causes an error * 2701: plotting option logy causes an error * 2700: plot option psfile causes an error * 2699: nticks seems ignored * 2696: *prompt-prefix* and *prompt-suffix* not inserted for askinteger / asksign * 2695: kill kills built-in properties of operator after user-defined property * 2687: call-arguments-limit easily exhaustable in tex1 * 2682: Function zeta fails numerically for large numbers that aren't even integers * 2681: solve_rec wrong result * 2676: integral incorrect when variable is subscripted * 2675: maxima will not do the simplest of definite integrals and will not factor otherwise * 2671: Since 4833b5 Maxima (with ECL at least) outputs palette numbers gnuplot unnumbered bugs: * bug in gnuplot_term option * bug in starplot * bug in ratinterpol * %e^^A should not simplify to %e^A * %pi is now correctly rounded with high probability * embedded plotting bug in XMaxima * bug in single-label case for plotting option 'label' * bug in comment indentation in Emacs * $CONS and friends should treat lists the same as other expressions * mailing list 2014-02-27: "assigning to a list of structure fields does not work"
2015-08-02Bump PKGREVISION for hs-text-1.2.1.3szptvlfn6-12/+12
2015-07-25Bump PKGREVISION for hs-unordered-containers-0.2.5.1szptvlfn2-4/+4
2015-07-21Update py-pandas to 0.16.2.bad3-19/+73
Closes PR pkg/49958 by matthewd. Changes since 0.14.1 for a full list see http://pandas.pydata.org/pandas-docs/stable/whatsnew.html: v 0.16.2 This is a minor bug-fix release from 0.16.1 and includes a a large number of bug fixes along some new features (pipe() method), enhancements, and performance improvements. We recommend that all users upgrade to this version. Highlights include: A new pipe method Documentation on how to use numba with pandas, v 0.16.1 This is a minor bug-fix release from 0.16.0 and includes a a large number of bug fixes along several new features, enhancements, and performance improvements. We recommend that all users upgrade to this version. Highlights include: Support for a CategoricalIndex, a category based index New section on how-to-contribute to pandas Revised “Merge, join, and concatenate” documentation, including graphical examples to make it easier to understand each operations New method sample for drawing random samples from Series, DataFrames and Panels. The default Index printing has changed to a more uniform format BusinessHour datetime-offset is now supported Further enhancement to the .str accessor to make string operations easier v0.16.0 (March 22, 2015) This is a major release from 0.15.2 and includes a small number of API changes, several new features, enhancements, and performance improvements along with a large number of bug fixes. We recommend that all users upgrade to this version. Highlights include: DataFrame.assign method Series.to_coo/from_coo methods to interact with scipy.sparse Backwards incompatible change to Timedelta to conform the .seconds attribute with datetime.timedelta Changes to the .loc slicing API to conform with the behavior of .ix Changes to the default for ordering in the Categorical constructor Enhancement to the .str accessor to make string operations easier The pandas.tools.rplot, pandas.sandbox.qtpandas and pandas.rpy modules are deprecated. We refer users to external packages like seaborn, pandas-qt and rpy2 for similar or equivalent functionality, see here v0.15.0 (October 18, 2014) This is a major release from 0.14.1 and includes a small number of API changes, several new features, enhancements, and performance improvements along with a large number of bug fixes. We recommend that all users upgrade to this version. Warning pandas >= 0.15.0 will no longer support compatibility with NumPy versions < 1.7.0. If you want to use the latest versions of pandas, please upgrade to NumPy >= 1.7.0 (GH7711) Highlights include: The Categorical type was integrated as a first-class pandas type New scalar type Timedelta, and a new index type TimedeltaIndex New datetimelike properties accessor .dt for Series, see Datetimelike Properties New DataFrame default display for df.info() to include memory usage, see Memory Usage read_csv will now by default ignore blank lines when parsing API change in using Indexes in set operations Enhancements in the handling of timezones A lot of improvements to the rolling and expanding moment funtions Internal refactoring of the Index class to no longer sub-class ndarray, see Internal Refactoring dropping support for PyTables less than version 3.0.0, and numexpr less than version 2.1 (GH7990) Split indexing documentation into Indexing and Selecting Data and MultiIndex / Advanced Indexing Split out string methods documentation into Working with Text Data
2015-07-12Comment out dependencies of the stylewiz1-3/+3
{perl>=5.16.6,p5-ExtUtils-ParseXS>=3.15}:../../devel/p5-ExtUtils-ParseXS since pkgsrc enforces the newest perl version anyway, so they should always pick perl, but sometimes (pkg_add) don't due to the design of the {,} syntax. No effective change for the above reason. Ok joerg
2015-07-12Update to 1.706wen2-7/+6
Upstream changes: 1.706 2015-03-22 12:27:08-04:00 America/New_York - do not allow offsets with inverted/broken offset values 1.705 2014-11-16 13:59:01-05:00 America/New_York - correct reversed-order of parameters in documentation for Test::Tolerant 1.704 2014-10-30 23:11:41-04:00 America/New_York - do not rely on feature.pm -- that was an accident 1.703 2014-02-01 19:31:40-05:00 America/New_York - overload tolerances for ~~ operator (thanks, Smylers!) 1.702 2013-10-07 10:22:17 America/New_York update bugtracker avoid circular loading problems (with a nasty hack) fix spelling error; thanks, Alexandre Mestiashvili!
2015-07-04Remove USE_X11BASE and X11PREFIX.joerg8-16/+8
2015-07-03Fix texinfo version check.joerg2-4/+14
2015-06-30Recursive revbump associated with update of lang/ocaml to 4.02.2.jaapb1-2/+2
2015-06-30Update to 3.1.3ryoon2-45/+7
Changelog: Changes from version 3.1.2 to version 3.1.3: - Better support for Automake 1.13+ (now used to generate the tarball). - Improved MPFR manual. - Bug fixes (see <http://www.mpfr.org/mpfr-3.1.2/#fixed> and ChangeLog file).
2015-06-30Update to 1.3.4wen4-52/+6
Upstream changes: 2014-10-16, version 1.3.4 ========================= Implementation changes ---------------------- * Fix input of huge floats. Other changes ------------- * Support the AArch64 and the Mips64 ABIs. 2013-07-21, version 1.3.3 ========================= Implementation changes ---------------------- * Fix integer input of leading zeros in power-of-two base. * Fix several floating-poing conversion bugs involving huge numbers. * Fix bug that would set input stream fail state when reading a number at EOF. Other changes ------------- * Support the x32 ABI.
2015-06-30Update to 3.2.1wen4-29/+12
Upstream changes: CHANGES IN R 3.2.1 NEW FEATURES utf8ToInt() now checks that its input is valid UTF-8 and returns NA if it is not. install.packages() now allows type = "both" with repos = NULL if it can infer the type of file. nchar(x, *) and nzchar(x) gain a new argument keepNA which governs how the result for NAs in x is determined. For the R 3.2.x series, the default remains FALSE which is fully back compatible. From R 3.3.0, the default will change to keepNA = NA and you are advised to consider this for code portability. news() more flexibly extracts dates from package ‘NEWS.Rd’ files. lengths(x) now also works (trivially) for atomic x and hence can be used more generally as an efficient replacement of sapply(x, length) and similar. The included version of PCRE has been updated to 8.37, a bug-fix release. diag() no longer duplicates a matrix when extracting its diagonal. as.character.srcref() gains an argument to allow characters corresponding to a range of source references to be extracted. BUG FIXES acf() and ccf() now guarantee values strictly in [-1,1] (instead of sometimes very slightly outside). PR#15832. as.integer("111111111111") now gives NA (with a warning) as it does for the corresponding numeric or negative number coercions. Further, as.integer(M + 0.1) now gives M (instead of NA) when M is the maximal representable integer. On some platforms nchar(x, "c") and nchar(x, "w") would return values (possibly NA) for inputs which were declared to be UTF-8 but were not, or for invalid strings without a marked encoding in a multi-byte locale, rather than give an error. Additional checks have been added to mitigate this. apply(a, M, function(u) c(X = ., Y = .)) again has dimnames containing "X" and "Y" (as in R < 3.2.0). (Windows only) In some cases, the --clean option to R CMD INSTALL could fail. (PR#16178) (Windows only) choose.files() would occasionally include characters from the result of an earlier call in the result of a later one. (PR#16270) A change in RSiteSearch() in R 3.2.0 caused it to submit invalid URLs. (PR#16329) Rscript and command line R silently ignored incomplete statements at the end of a script; now they are reported as parse errors. (PR#16350) Parse data for very long strings was not stored. (PR#16354) plotNode(), the workhorse of the plot method for "dendrogram"s is no longer recursive, thanks to Suharto Anggono, and hence also works for deeply nested dendrograms. (PR#15215) The parser could overflow internally when given numbers in scientific format with extremely large exponents. (PR#16358) If the CRAN mirror was not set, install.packages(type = "both") and related functions could repeatedly query the user for it. (Part of PR#16362) The low-level functions .rowSums() etc. did not check the length of their argument, so could segfault. (PR#16367) The quietly argument of library() is now correctly propagated from .getRequiredPackages2(). Under some circumstances using the internal PCRE when building R fron source would cause external libs such as -llzma to be omitted from the main link. The .Primitive default methods of the logic operators, i.e., !, & and |, now give correct error messages when appropriate, e.g., for `&`(TRUE) or `!`(). (PR#16385) cummax(x) now correctly propagates NAs also when x is of type integer and begins with an NA. summaryRprof() could fail when the profile contained only two records. (PR#16395) HTML vignettes opened using vignette() did not support links into the rest of the HTML help system. (Links worked properly when the vignette was opened using browseVignettes() or from within the help system.) arima(*, xreg = .) (for d >= 1) computes estimated variances based on a the number of effective observations as in R version 3.0.1 and earlier. (PR#16278) slotNames(.) is now correct for "signature" objects (mostly used internally in methods). On some systems, the first string comparison after a locale change would result in NA.
2015-06-29Fix symbol visibility.markd3-3/+19
2015-06-27Needs pdftex.joerg1-1/+2
2015-06-22Update the fixwrap substitution to work correctly after the recentjperkin1-2/+2
libtool changes. Fixes CHECK_WRKREF builds.
2015-06-15tex-latex-fonts is in fonts, not in print.joerg1-2/+2
2015-06-15Update gnome-calculator to 3.16.2prlw12-7/+8
Overview of changes in gnome-calculator 3.16.2 * Fix : Search provider crash introduced by 3.16.1, oops (Michael Catanzaro) Overview of changes in gnome-calculator 3.16.1 * Update : Translations (Translation team) * Fix : Search provider should discard child stdout/stderr (Michael Catanzaro) * Fix : Syntax error in desktop file keywords Bosnian translation (Kalev Lember) Overview of changes in gnome-calculator 3.16.0 * Update : Translations (Translation team) Overview of changes in gnome-calculator 3.15.91 * New : Remove red color from clear button (Allan Day) * Update : Powers page in documentation (Sebastian Rasmussen, Ekaterina Gerasimova) * Update : Translations (Translation team) Overview of changes in gnome-calculator 3.15.4 * New : Keyboard mode (Elita Lobo) * New : MPFR back-end (Daniel Renninghoff) * New : Digital Storage conversion (PioneerAxon) * Update : Switch to GPLv3+ license (Michael Catanzaro) * Update : Case-insensitive conversion units (PioneerAxon) * Update : Don't copy thousand separators to clipboard (PioneerAxon) * Update : Translations (Translation team) * Fix : Use HTTPS for downloading exchange rates (Michael Catanzaro) * Fix : Repeated entries in history view (Elita Lobo) * Fix : Padding in UI buttons (Trinh Anh Ngoc) * Fix : Style history view boarder (Trinh Anh Ngoc) * Fix : Sort currencies based on locale (LubomĂ­r SedlĂĄĹ<99>) * Fix : Deprecated use-stock property (David King) * Fix : Download missing exchange rates on first launch (PioneerAxon) * Fix : Missing buildtime dependency (Emmanuele Bassi) * Fix : gtksourceview binding change (Michael Catanzaro) Overview of changes in gnome-calculator 3.15.1 * New : Colored buttons (Elita Lobo) * New : History view (Elita Lobo) * Update : Update to latest GtkSourceView API (Yosef Or Boczko, Evan Nemerson) * Update : Support upcoming Vala 0.27 (Rico Tzschichholz) * Update : Increase search provider timeout (Michael Catanzaro) * Update : Translations (Translation team) * Update : Miscellaneous code improvements (Arnaud Bonatti, Michael Catanzaro) * Fix : Misordered buttons in programming mode (Abhinav) * Fix : Search provider should not match plain numbers (Marcus Lundblad) * Fix : Spurious warnings from search provider (Michael Catanzaro) * Fix : Crash after thousands separator is inserted (Michael Catanzaro)
2015-06-14Update tex-apnum{,-doc} to 1.2 from texlive 2015markd4-14/+14
.5+.5=.1 bug fixed
2015-06-12Recursive PKGREVISION bump for all packages mentioning 'perl',wiz67-124/+134
having a PKGNAME of p5-*, or depending such a package, for perl-5.22.0.
2015-06-10Since the code expects boost::array to win, use that explicitly.joerg2-1/+52
2015-06-08Bump PKGREVISION for hs-hashable-1.2.3.2szptvlfn6-12/+12
2015-06-07Update to 1.8.2; changes not found.wiz2-6/+6
2015-06-04Bump PKGREVISION for hs-text-1.2.1.1szptvlfn6-11/+12
2015-05-31Update to 0.15.0wen5-84/+6
No upstream changelog found.
2015-05-31Update to 1.0wen2-6/+6
Upstream changes: Version 1.0 2015-02-10 Convert rngs to real function in accordance with pan Cast rangen explicitly as real Revise DESCRIPTION and remove .Rinstignore
2015-05-31Update to 1.2.2wen2-6/+6
No upstream changelog found.
2015-05-31Update to 2.3.9wen2-6/+6
No upstream changelog found.
2015-05-31Update to 1.0.2wen2-6/+6
Upstream changes: Changes in version 1.0-2 (2014-12-16) o start providing C interfaces to the underlying algorithms. mvtnorm_C_mvtdst() directly calls Alan's FORTRAN code and can be used in other packages via LinkingTo. See mvtnorm/inst/C_API_Example for an example very much inspired by the example provided in package xts. o provide .C interfaces to the FORTRAN routines and allow switching on/off of R' RNG. Changes in version 1.0-1 (2014-11-11) o replace internal MVCHNV FORTRAN FUNCTION with R's sqrt(qchisq(p, n, FALSE, FALSE). This fixes a problem where NaN was returned as reported by David Charles Airey <airey_david_charles_at_lilly.com> Changes in version 1.0-0 (2014-07-08) o After 14 years, we now feel safe enough to publish mvtnorm 1.0-0. Many packages depend, import, or suggest mvtnorm, so this version change also indicates that the package is now stable and, to a very large extent, the API is frozen. We will of course continue to fix bugs or other problems but new features are unlikely to go into this package. o use Authors@R in DESCRIPTION o switch to standard NEWS format
2015-05-31Update to 1.8.2wen2-6/+6
No Upstream changelog found.
2015-05-31Update to 4.6.10wen2-6/+6
Upstream changes: Changes in 4.6-10: * Fixed bugs introduced in 4.6-8 and 4.6-9. Levels for ordered factors in predictors are no longer checked for consistency between training and test data in predict.randomForest(). In 4.6-9 the response is mean centered before running the algorithm (for regression), but the mean was not added back in the $y component of the return object from randomForest(). Changes in 4.6-9: * Categorical predictors are allowed to have up to 53 categories now. Changes in 4.6-8: * There was a bug in the handling of ordered factors in randomForest.formula(). (Reported by Barry Rawlingson.) * Changed randomForest.formula() and predict.randomForest() so that predict() without newdata when na.action=na.exclude pads the output with NAs to match the rows in the original data (suggested by Barry Rawlingson.). * There was a long standing bug in randomForest(..., proximity=TRUE, oob.prox=FALSE) in regression mode. (Thanks to Stefano Romano for the report.)
2015-05-31Update to 1.1.4wen2-7/+7
Update DEPENDS Upstream changes: commit 3083307fc8ebf938673028cf7ffc3ccff6a4cac6 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Apr 24 13:56:40 2015 +0200 upgrade to match sp 1.1-0 commit 5e7950336984a567c0f07abb019930dbaf068abb Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Mar 17 14:21:20 2015 +0100 docs for expand.range commit 58d8db3d8863eee96aeea1cf458fbee2e42b32db Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Mar 17 14:18:44 2015 +0100 range of at was too small; report by Roland Harhoff commit af552c7e902b69979f309bcf1f795bc7cf782f11 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Mar 17 13:56:53 2015 +0100 add drop=FALSE to data.frame selector commit 8ac495755ea13ef90b9e378ec26b963ea316174b Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Mar 13 16:20:47 2015 +0100 adding +ellps= to CRS arguments, for PROJ 4.9.1 commit 393bb24344b7b3648086ecadf5bf287bdea4fcde Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Mar 5 00:12:50 2015 +0100 replace unstack with reshape; clean check commit 45bf1588eef7e2ddbf07f843333d72f0a99d0e4f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Mar 4 20:27:51 2015 +0100 stplot mode = "xt" for factor: plots as number but no longer crashes commit b7e51d1720dace123a73669ee04b77255a0b9c09 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Mar 4 19:07:27 2015 +0100 stplot factor variables when mode = "xy" commit 24671c67b17293749937d7c955a80ce8e12ac619 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Feb 11 10:51:18 2015 +0100 make stsdf[1,1] do sth more sensible commit e7d26c403722f6dfe08f27bbbe82644e2f48976e Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Jan 28 12:13:49 2015 +0100 improve error message commit f37ad515f35e21f9351c290437f2948f34b5f894 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Jan 28 10:25:09 2015 +0100 enable check on duplicate attributes for STSDF commit 995dd6d742143bf9fcc4d43c19c358f9a4bc626c Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Jan 27 23:34:52 2015 +0100 adopt new behaviour for STFDF too commit 08fcfb9f1555e283c82107256c055a5bead0b265 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Jan 27 23:18:42 2015 +0100 add timeIndex to xts output on single pt subset; report from Jon Skoien; commit 68d9420d6a9bad79f3b84c656cbfc9f670fe5a28 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sat Jan 24 10:19:17 2015 +0100 remove rgeos dependency in sto.Rnw, add DE to air.rda commit 097d3a0fbc63f2ef7773825c07d35eafa3ab3cba Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Jan 21 23:20:34 2015 +0100 make rgeos requirement conditional commit cddc6c9ac45dfc7664c7e5b3adbcc65b0f499961 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Jan 21 09:08:18 2015 +0100 bump version commit 218a99f5b7b475353f8b37246c945c47f881f6aa Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Jan 19 14:55:57 2015 +0100 correct timeIndex order for as.data.frame.STS, reported by Jon Skoien commit 6502ebfd51b6704669c46d26c8dd2b7304c630ef Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sat Jan 17 23:05:15 2015 +0100 conditional require(rgeos) in example commit 3f4f8a5c3e6048393ad14fd4444ec03773207dc9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Jan 15 13:05:22 2015 +0100 more spTransform commit a29c98f3c80a784967bc319b5c63a9a725b631cd Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Jan 15 13:03:49 2015 +0100 title case; address rgdal requirement for spTransform commit e6073767b1e303dcb20c99cfe635d762bdd36eda Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Jan 15 11:51:11 2015 +0100 update test output commit 5b36a6916bc8af4cd696bb7742b0e0f03abe5b25 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Jan 14 17:33:25 2015 +0100 typo... commit f74c045284b795bc0e4ad1e167608dfa74a21674 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Jan 14 16:59:45 2015 +0100 update test output commit 0604dd381b7e2e10f97bbc3d5b26c8119c744a8f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Jan 14 16:41:54 2015 +0100 prevent @sp attributes getting dropped (lost) commit a144894fbb8590a701cec4f99ae1f6f09d896916 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Dec 14 13:18:17 2014 +0100 correct aggregate with args STIDF, STF; add time chk commit 4c8cd4f1d6220dc43634e4333e18393a7d8d87e9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sat Nov 22 12:26:03 2014 +0100 correct bug in stConstruct() when STIDF has non-chronological records commit 1969b0c7ba6197d96d4541a15a71a84a19291803 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Nov 20 11:26:02 2014 +0100 vignette pdf commit 850c3068348815205937350d9dad048ec3e18cfd Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Nov 20 11:22:36 2014 +0100 update date commit 2076a4e3b24c5f2aa8e029eca1a28f9d05f39d52 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Nov 20 11:20:35 2014 +0100 aggregate() for STI and STF with polygons did not work commit d903c16d831c43ab777a552b7c31687e5046396f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Oct 30 10:55:32 2014 +0100 move rgeos to Suggests; improve wind plots in vignette commit da80be7b754e3b613107845166687b02deeb96dc Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Oct 27 19:26:35 2014 +0100 update the time plots commit c1f9a7480241deeb177e345332e4045236e9c02e Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Oct 27 19:17:24 2014 +0100 change argument to returnEOFs commit 1783943b6aa395ee0296bed53e88126b51909fd3 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Oct 27 19:02:58 2014 +0100 add function eof, deprecate EOF commit 480f74eb8a74adb4a2508f17d470434c2deabf42 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Oct 16 11:00:32 2014 +0200 added ... to apply() calls commit c98b5c3ae85414e1eaf53ea0bf72373d371d0dca Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Oct 16 09:40:00 2014 +0200 doc omission, found by Roland Harhoff commit 9c82ea3f06c105323282e486ebae84fc6fcfbaca Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Oct 14 09:25:09 2014 +0200 name too long: only use first name commit 0ed91ac92db69dc64cecaa9ecf08efbb2308db45 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Sep 26 21:44:00 2014 +0200 add parens commit be2182be7cfafadd2d5ebde3256c7eea902c5e2f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Sep 23 21:59:55 2014 +0200 add call to match.fun(), add STT method to stplot commit faab956a4f570502961e2f570b5452a346f540ba Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Sep 11 23:29:30 2014 +0200 add stplot method for STT commit d83a3607c80317ace36009534c8a2cf0c276c570 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Sep 7 23:34:13 2014 +0200 add subset methods with ST objects commit c974e676d494be7cbab83798763115783704dfee Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Sep 7 23:02:44 2014 +0200 add selection based on match with STF object commit 8ad1aa01bcbdc4f12e40f8ffe59a77de8157ff77 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Sep 7 23:02:29 2014 +0200 tidy tabstop commit 0db898784310fd8b209a9f586f7da47e2fd83c3b Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Sep 7 22:18:52 2014 +0200 tidy (revert back to tabstop = 4 spaces) commit 5a476b1fe7580118aeee8af2cbbb5129716c7dac Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Aug 28 12:36:55 2014 +0200 tzone attribute is now passed on by rbind.STIDF commit ac8c4d8bfe3e11ca8f14ade6107b917d7c49bdaa Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Aug 24 14:09:14 2014 +0200 removed ISO codes from air; version bump; tidy stgvis commit 901738891468730db87e48490c2fa48fad3cd1ef Merge: 3b0096f 010b921 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Aug 24 14:05:07 2014 +0200 Merge pull request #20 from mages/patch-2 Update stgvis.Rmd commit 010b921d910fbee90bcc144a0349d7cc20bf88d0 Author: Markus Gesmann <markus.gesmann@gmail.com> Date: Sun Aug 24 11:00:48 2014 +0100 Update stgvis.Rmd Changed the order in which the data is loaded, as otherwise the mapping of German state names apears to be overwritten by data in air. commit 3b0096f5fb43ef2af9a1ad61344c8f7032056cee Merge: 709d30a c44ea66 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Aug 24 10:35:38 2014 +0200 Merge pull request #19 from mages/patch-1 Update stgvis.Rmd commit c44ea6605becfc38a4c54511a53daf4906b81aa7 Author: Markus Gesmann <markus.gesmann@gmail.com> Date: Sat Aug 23 21:05:23 2014 +0100 Update stgvis.Rmd I changed the gvisGeoMap statement to gvisGeoChart, as they don't require Flash. Further the Google geo charts understand that Berlin is not part of Brandenburg. Unfortunately, geo charts don't recognise Brandenburg as a province either, hence the codes become handy again. The German state name mapping are available via a CRAN package, thus you don't have to download them from Wikipedia. Finally, I added some number formatting to the option setting. commit 709d30a7751823aafc6fc77dd9196220edf9ecea Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Aug 22 18:57:22 2014 +0200 hopefully pass check with r-devel; set TZ in subsetting.R commit 6226cea3e7f0a758763bb7208f211a032da0221f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Aug 22 15:44:37 2014 +0200 add pointer to ISO_3166_2_DE in air.rda commit 2bd0272437f47090ac5fa5ae4616e226bea5158e Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Aug 22 15:41:17 2014 +0200 remove call to wikipedia, add ISO table to air add help to stpg to find out whether rgdal misses PostgreSQL driver commit 7887e760c10ba9a6501ecba1c43410558d12963c Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Aug 22 09:36:48 2014 +0200 add Irish station means geo chart commit 11e5da9c96fe9f9dae8d3d93e1b54059af7adbe9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Aug 22 08:20:57 2014 +0200 add time line graphs commit ccee6c0164714a022edf6441f41bdc863798c836 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Aug 21 13:48:55 2014 +0200 update commit 55709a1d166aaa23834fab036d3af2e08d066fdb Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Aug 21 11:17:20 2014 +0200 add googleVis example vignette, typo in stsubs commit f5838cbc73c77ed072a251a4c3b6c1ec56bd5fc0 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Aug 14 13:45:17 2014 +0200 add library(sp) commit 542026cafb10400a6bab77d35e2c583783abb2b8 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Jul 13 17:51:32 2014 +0200 write.tgrass now writes init.txt commit 59fc45e87113dd5c609b4654f26402bba18b1e8d Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Apr 9 15:42:22 2014 +0200 update date commit 7c0ebc61027fea62bcd59898594ea90fdece14f1 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Apr 1 16:08:37 2014 +0200 include git commit logs in ChangeLog commit b7f0e46a24e2a0ee81b022709aca83806674a1b0 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Apr 1 16:04:13 2014 +0200 depend on R 3.0.0, mv old ChangeLog commit f8d07fd645fbe53f03d77a12113f186f7acd4e99 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Mar 27 20:30:44 2014 +0100 tidy indentation and obsolete braces commit 89827b7864688b94cd8edd87312bc8d0b9004e9e Merge: 9023c72 2eca08d Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Mar 25 11:35:11 2014 +0100 Merge pull request #18 from BenGraeler/master special case of one row matrices for subsetting commit 2eca08d29e11a5b01fb489104779bbfb679a23c6 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Tue Mar 25 11:30:10 2014 +0100 - handeled the special case of one row matrices for subsetting commit 9023c7262bd12901afa4a6af3941114756726a4a Merge: d361d74 12b506f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Mar 14 10:41:06 2014 +0100 Merge pull request #17 from BenGraeler/master Unified subsetting of ST* objects commit 12b506fdc67f98c96fcb837728a39b1dcb6542a0 Merge: b0c4e1e c1bf9cf Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Thu Feb 27 14:13:46 2014 +0100 - some textual changes Merge branch 'master' of https://github.com/BenGraeler/spacetime Conflicts: vignettes/stsubs.Rnw vignettes/stsubs.pdf commit b0c4e1ef23e1c8bb0dc155bb145f45f627159142 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Thu Feb 27 11:52:57 2014 +0100 - some textual changes in stsubs.Rnw - updated test files for subsetting commit c1bf9cf851f321c674ab5b1f8283d7143287582a Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Thu Feb 27 11:52:57 2014 +0100 - some textual changes in stsubs.Rnw commit 9add4fb1220bff4cf5af7c292cc0314619be3bf7 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Wed Feb 26 16:52:22 2014 +0100 - added vignette on subsetting of spacetime classes - some corrections of the subsetting methods along the way of the vignette commit cdf6e5655c09843db5026301ffde4f1d79c229b8 Merge: 0acbe05 d361d74 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Wed Feb 26 14:13:54 2014 +0100 Merge remote-tracking branch 'edzerRepo/master' commit d361d74a72065ee1579d1e16cee65954b126047b Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Feb 26 12:20:28 2014 +0100 move trajectories code into a separate package commit 0acbe05cf884775d2fa40eab2846d4af70856414 Merge: 8ef17f0 8283e44 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Tue Feb 25 16:21:23 2014 +0100 Merge remote-tracking branch 'edzerRepo/master' commit 8ef17f0a5f733c6eab7027b15db2055a3e6ba85a Merge: 2fd98e6 47d350d Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Tue Feb 25 16:18:44 2014 +0100 Merge remote-tracking branch 'edzerRepo/master' commit 2fd98e68c2c369421179aa8d16fd27accb8b7b55 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Tue Feb 25 16:02:29 2014 +0100 - STI.. allows now for multiple selection commit 559e662ce45567fd8e34f8a5a370f777c60df4a9 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Tue Feb 25 15:36:50 2014 +0100 - STF.. now allows for a matrix index, but returns STS.. commit 9c18d8ba936e0aebc6215a45c789ebcea6d86d6f Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Tue Feb 25 13:50:12 2014 +0100 - allow for multiple selection in STS.. - respect ordered subsetting from STS.. commit 8283e44958909bb35d398b6d535bc0eb41180e04 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Feb 18 19:00:08 2014 +0100 add url of geolife commit fd1005cd70ad57e9583d4e3bbd2623711133c79a Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Feb 18 18:48:10 2014 +0100 add geolife reading demo (without geolife data) commit 259cbef2526120cac4bc8f7a9bf9fc1284e6d3a5 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Feb 17 08:59:04 2014 +0100 clean, tidy commit 7cb6f6a7eae301e2154b116d4b3bbeecea4adfd9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Feb 16 22:59:49 2014 +0100 avoid rgl plot from vignette commit 8b680daebbdccdd3cf5ddf6fdac44c8f35c3dfbf Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Feb 16 21:50:06 2014 +0100 add subsetting output commit 1a6cebfc8c0115e5efe2f58098fb5aa607ee9fa3 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Feb 16 21:49:40 2014 +0100 clean up tests commit a8c7cda2b16218beeb4090c03d6c0c9cdb2ec8bd Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Feb 16 18:48:44 2014 +0100 add A3 example, add subsetting test commit 785a40cad6e5f16fd0d8223ebe03d06af21b66f0 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Feb 16 17:29:56 2014 +0100 clean tracks vignette dependencies commit 47d350d50204d6c8c0ec1cf1b701846a79ef6603 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Feb 14 17:00:14 2014 +0100 remove more dependencies commit 850c3b522b7856d8bf505b80747763a40b82dded Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Feb 14 16:52:36 2014 +0100 remove dependencies in tracks.Rmd commit 14d91e6b3e7490cb715a75d1c6322775cbbcfe83 Merge: 09f8268 67d2dfb Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Feb 14 15:44:50 2014 +0100 Merge branch 'master' of github.com:edzer/spacetime commit 09f82681a343f44b8bdcc46532077c56271bb569 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Feb 14 15:44:03 2014 +0100 make tracks vignette work without https, add A3 commit 67d2dfbfac10f521f65cb3265a8f995a19928b9a Merge: 196edcd a7e997f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Feb 9 10:09:49 2014 +0100 Merge pull request #16 from BenGraeler/master matrix like subsetting for STS and STSDF commit a7e997fe73ce166f04cd700a9937a36352b9c673 Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Thu Feb 6 13:08:56 2014 +0100 - ignore issues commit 196edcd5476f2d76fc5642dbe787158d4adfb782 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sat Jan 25 20:30:35 2014 +0100 optimize coercion from STIDF to STSDF commit 85cf72d367fe61f2e5c755cc52b337a3eac5d250 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Jan 20 08:25:39 2014 +0100 update output commit 8b580e1fa6d3ea4ba050d9b6d73f599b7918de7a Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Jan 19 23:17:30 2014 +0100 merge pull request; simplify vignette requirements commit 678e7a71494724849eb7e6e9100354f0abcb08bb Merge: fe81b0d 9ed6d1c Author: Bene Luks <benedikt.klus@mail.de> Date: Sun Jan 19 22:31:10 2014 +0100 Merge remote-tracking branch 'upstream/master' commit fe81b0d58e459e2b350a465d5fdb83a9f4c715d1 Author: Bene Luks <benedikt.klus@mail.de> Date: Sun Jan 19 22:30:42 2014 +0100 Make R CMD build happy on Windows systems. commit 18280f3ce920c93d9e3cacda2b6e7c1671e9139b Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Wed Jan 8 17:57:49 2014 +0100 - supports matrix index for sub-setting commit 1b8588bb24f9437fd724bebc026d80f1f8ce38ea Merge: 3335b43 9ed6d1c Author: Benedikt Gräler <ben.graeler@uni-muenster.de> Date: Tue Jan 7 23:34:15 2014 -0800 Merge pull request #2 from edzer/master update to edzer/spacetime commit 9ed6d1c12a462d1021eb9fc9751f731e04f53369 Merge: f2306e2 84da479 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Dec 19 06:01:28 2013 -0800 Merge pull request #14 from k2sk8s/master Added vignette to summarise recent trajectory work commit 84da479fb6d42e8edf0c58d676777b485561a05c Author: Bene Luks <benedikt.klus@mail.de> Date: Thu Dec 19 10:42:47 2013 +0100 Added vignette to summarise recent trajectory work. commit 8ed3561be1e245f06ae47d87d15ad2fb50edde85 Author: Bene Luks <benedikt.klus@mail.de> Date: Thu Dec 19 10:41:14 2013 +0100 Fill missing attribute data with NA instead of dropping the whole column. commit f2306e215c3d3539f3b4d1dda6413288ba7b735b Merge: afcf4db 6bd22a6 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Nov 27 14:42:29 2013 +0100 Merge branch 'master' of github.com:edzer/spacetime commit afcf4db3c0c52e453028551ffddaec428a3c2c7e Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Nov 27 14:41:30 2013 +0100 normalize function for cyclic time (hour, weekday) commit 6bd22a6d57f6703b6b0bf2aa0ddb7b6cb8b12226 Merge: e534d16 dc56ad4 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Nov 26 13:15:36 2013 -0800 Merge pull request #13 from k2sk8s/master Fix: Make aspect ratio work for non lat/lon data commit dc56ad43a969624154626c415d829f0c777065f8 Merge: fa19c87 e534d16 Author: Bene Luks <b.luks@gmx.de> Date: Tue Nov 26 22:11:00 2013 +0100 Merge remote-tracking branch 'upstream/master' commit fa19c87665450a438700823148de103e4980c9b1 Author: Bene Luks <b.luks@gmx.de> Date: Tue Nov 26 22:10:24 2013 +0100 Fix: Make aspect ratio work for non lat/lon data. commit e534d16280e2314ff15cedf98a86096b6e1a446d Merge: e05dfa5 29ed800 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Nov 26 08:20:30 2013 -0800 Merge pull request #12 from k2sk8s/master Updated stcube methods to use a sensible aspect ratio and normalized tim... commit 29ed800be8a45275418d56709c4bf52d08b3c962 Author: Bene Luks <b.luks@gmx.de> Date: Tue Nov 26 16:19:55 2013 +0100 Updated stcube methods to use a sensible aspect ratio and normalized time values. commit e05dfa5ca8452575ca7588dc4c6a0b2c3415ff55 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sat Nov 23 00:25:07 2013 +0100 add stcube demo, merge Benedikt Klus' stcube work moved rgl and OpenStreetMap to Suggests: commit 326c165fddbfe149d47feb2543615cc1fba4ff0d Merge: 33dd041 481a575 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sat Nov 23 00:24:26 2013 +0100 Merge branch 'master' of https://github.com/k2sk8s/spacetime Conflicts: DESCRIPTION commit 33dd0414067c56e6d04c29fc3688c8114a0a9cd9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Nov 22 23:59:27 2013 +0100 update Suggests: list commit 481a5753cccc4f2ed5fa290125b0b69f2d26948e Author: Bene Luks <b.luks@gmx.de> Date: Fri Nov 22 22:04:44 2013 +0100 Added stcube methods. commit 3335b43065e878107063160da93082e35b830c95 Merge: 5a1e1c4 8deb983 Author: Benedikt Gräler <ben.graeler@uni-muenster.de> Date: Tue Nov 19 01:32:11 2013 -0800 Merge pull request #1 from edzer/master pull from Edzer commit 8deb98368d305ebe606d2cc0b341ed834d77152f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Nov 18 11:42:51 2013 +0100 update date commit 9bb8904ee6619c5c6ae1a500d719b6d5ebe68b75 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Nov 15 15:05:35 2013 +0100 add example, refresh example test output commit cca40266a461bcb5a5afd9d3ed3d65142d334f53 Author: Bene Luks <b.luks@gmx.de> Date: Fri Nov 15 00:50:10 2013 +0100 Updated selection methods. commit 46819c20bd76991689abc65b2038f09366891c21 Merge: f3ef5c6 5d69399 Author: Bene Luks <b.luks@gmx.de> Date: Thu Nov 14 22:48:24 2013 +0100 Merge remote-tracking branch 'upstream/master' commit f3ef5c693dd8c145823c181501e779059733eaca Author: Bene Luks <b.luks@gmx.de> Date: Thu Nov 14 22:48:05 2013 +0100 Added [[, [[<-, $ and $<- methods. commit 5d69399de5e334d9eb64578e14bd8a875bc6cfb9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Nov 14 13:17:01 2013 +0100 improve NA time warning commit 09142041049dccdacc773f76d20b6f28995a4c54 Author: Bene Luks <b.luks@gmx.de> Date: Wed Nov 13 16:36:09 2013 +0100 Simplified code. commit 92e5eff84aa0663961665d0e6b3a7350d7a06ee5 Author: Bene Luks <b.luks@gmx.de> Date: Wed Nov 13 16:26:04 2013 +0100 generalize() now correctly checks the number of passed arguments. Added documentation. Fixed indentation. commit 5f31c3f72610a891a4c068ee34d52bc851950199 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sat Nov 9 20:59:47 2013 +0100 update author list; tidy generalize commit 5a1e1c46fa5bf458f4bb831cc189c0cf16fdaebb Author: Benedikt Gräler <ben.graeler@gmail.com> Date: Fri Nov 8 09:24:39 2013 +0100 - STSDF is now plotted with plot.STSDF - added coercion to STIDF for the call of stplot with STSDF commit 7ffeecb36ff614a0e55ba71f501ce139f8e3aefc Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Nov 8 00:18:59 2013 +0100 simplify generalize, pass ... to FUN, update man commit 4ca559402f47c87bea7fda340b399df4c2800010 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Nov 6 20:30:08 2013 +0100 added coerce to Spatial, changed dim names commit 2157dab93e358fed7ecd43c5909beee4d91016c4 Author: Bene Luks <b.luks@gmx.de> Date: Tue Nov 5 22:36:37 2013 +0100 Updated generalize method to consider all segments for aggregation. commit afe4626fe82797957a10bf8a062b9e6d04d57bc7 Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 29 00:26:04 2013 +0100 Added 'toPoints' argument. commit 7452d39fc447035b08ebfa40515d5120759298ef Author: Bene Luks <b.luks@gmx.de> Date: Mon Oct 28 23:25:51 2013 +0100 Updated 'generalize' methods to allow for simplifying the given geometry. commit 2666d7a3a9237b314cfe334c65da18ba0c8e074c Author: Bene Luks <b.luks@gmx.de> Date: Mon Oct 28 21:35:10 2013 +0100 Updated signature of 'generalize' methods to improve code maintainability. Added further regression tests. commit 3dc5dd2c333400067e1987422021777eab92b774 Author: Bene Luks <b.luks@gmx.de> Date: Mon Oct 28 20:18:58 2013 +0100 Updated 'generalize' methods to allow for generalizations over a predefined segment length. commit 454f7c9df13bb0ba656edf28dff928cc1dfdc7f4 Author: Bene Luks <b.luks@gmx.de> Date: Mon Oct 28 19:53:38 2013 +0100 Updated 'generalize' methods to allow for generalizations over distance. commit 7e4b418e8974b160fd03236ff2718bfb83e61f96 Author: Bene Luks <b.luks@gmx.de> Date: Mon Oct 28 12:54:54 2013 +0100 Added more 'generalize' methods. Added documentation to make 'R CMD check' run clean. Added regression tests. commit c28edf0d697eb66487960672445846e529687571 Author: Bene Luks <b.luks@gmx.de> Date: Sun Oct 27 21:39:59 2013 +0100 Added generalize method. commit 3cc6f9bcbb53f5f70462571c9b6bb5e4d1e33189 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Oct 27 00:14:35 2013 +0200 add stbox method, set back bbox, correct aggregate stbox methods now give the space and time ranges as a data.frame; bbox gives the sp-compatible spatial range matrix. aggregate with only a Spatial argument can do aggregation over all time, or spatial aggregation by time. STF and STF do it default per time slice (as in the sto vignette), other classes will group all, within a spatial feature, over time. commit 8e647893f255b5619ab27062abe0f84182f21265 Merge: 01955e2 8676eb6 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 17:50:47 2013 +0200 Merge branch 'master' of github.com:edzer/spacetime commit 01955e29715196ed3d27466f2d0a8821ce732f1e Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 17:48:02 2013 +0200 aggregation ST by Spatial now aggregates over time aggregation used to be by time slice too, making it only useful for STFDF objects, and actually doing an aggregate(ST,ST) where the second has identical time resolution as the first. The old behaviour is retained by aggregate(STFDF, Spatial, keepTime = TRUE) which is NOT the default, now (so I need to adapt sto.Rnw too). commit 8676eb60a7a3a375d36ce34ab35a651c14a6ade9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 15:12:12 2013 +0200 Update contribute.md commit 4377bf807ea214cb11a57321fd64efcf49134b90 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 15:11:15 2013 +0200 Update contribute.md commit 83e143f9e5ee00f5f832b67c95636682592eb8e0 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 15:10:11 2013 +0200 Update contribute.md commit 4ab6932b640a3105f571cef5adf7f7be97301063 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 14:47:44 2013 +0200 Update contribute.md commit e8d806ce929736b49677b2d07ce5bf3e8570f380 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 14:43:19 2013 +0200 Update contribute.md commit 5d884324b54a633e6c828a8138dd1bc2ab4b7f91 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 14:24:24 2013 +0200 add contribute file, and .Rbuildignore commit 3519ba44ed62877d90e73565b7773c444ad66c2f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 25 13:47:39 2013 +0200 coerce SpatialGrid into SpatialPixels in aggregate commit bb06885306275037bb1b7af9b9e8296c1e4afb9f Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Oct 23 00:28:57 2013 +0200 update date and role commit 6a14c1f2073c674873a08125ad5a4568dec13e16 Merge: b81353c 423c6aa Author: edzer <edzer.pebesma@uni-muenster.de> Date: Tue Oct 22 08:01:02 2013 -0700 Merge pull request #5 from k2sk8s/master Added aggregate and coordinates methods Note that when coercing to SpatialPointsDataFrame, aggregate methods will not know how to deal with time (temporal aggregation, or spatio-temporal aggregation). commit 423c6aa18caf55f2470ab7d31f42a2e2d7c85d42 Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 22 14:43:58 2013 +0200 Added coordinates methods. commit 2bfa55bccce4aa28ec455c3a37e01e0d265bedaf Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 22 12:38:49 2013 +0200 Added aggregate methods. commit b81353ce09536de61d7406ea7be4efa53cb6f327 Merge: 0a09988 bdfa19c Author: edzer <edzer.pebesma@uni-muenster.de> Date: Mon Oct 21 06:08:27 2013 -0700 Merge pull request #4 from k2sk8s/master Added summary methods. commit bdfa19c34d61cae88af7981dc3d5ebc9c18bb035 Author: Bene Luks <b.luks@gmx.de> Date: Mon Oct 21 14:40:53 2013 +0200 Added summary methods. commit 0a09988dde5d695eb0b465c3414181aae7d7a6da Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Oct 17 07:56:10 2013 +0200 fix random seed to obtain constant output from test commit 2448f15bac06db0f0c08840c5eb4b7b4244e30b4 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Oct 16 23:58:22 2013 +0200 add tracks test output copied from spacetime.Rcheck/tests, this file contains the reference test output (and should, after checking, be replaced again when the tests are changed or extended) commit 2f880211cbc00eaec98ea027577b54d247b3a204 Merge: 37905ec cd2011e Author: edzer <edzer.pebesma@uni-muenster.de> Date: Wed Oct 16 14:38:31 2013 -0700 Merge pull request #3 from k2sk8s/master Added first regression tests, among others commit cd2011e9d78acf6d3e59bfbe79c6f02ec200c068 Merge: dedfce8 37905ec Author: Bene Luks <b.luks@gmx.de> Date: Wed Oct 16 22:14:07 2013 +0200 Merged upstream. Resolved merge conflicts. commit dedfce84ccf66b03a8576c8e85223abc0708b9d1 Author: Bene Luks <b.luks@gmx.de> Date: Wed Oct 16 21:10:58 2013 +0200 Added first regression tests. More to come. commit 3d4deec02ab61e0e7dadf27c9b66767384a0a7d6 Author: Bene Luks <b.luks@gmx.de> Date: Wed Oct 16 21:01:16 2013 +0200 Fixed selection bug. Added comments. commit 4065f03a809006734214597d306cbe93f4d367d3 Author: Bene Luks <b.luks@gmx.de> Date: Wed Oct 16 16:18:19 2013 +0200 Wrapped comments at 80 characters. commit 8e1628d4358eb718872021e1af85119bd806418c Author: Bene Luks <b.luks@gmx.de> Date: Wed Oct 16 16:08:57 2013 +0200 Removed redundant coercion method. Wrapped comments at 80 characters. commit 37905ecf63c55ec46607b2c9c3ccbd4ce3550a7a Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Oct 15 19:00:07 2013 +0200 add rbind for STIDF, sp dependency on rev 1478 created dependency on sp revision 1478 (r-forge) that cleans up the CRS checking in validity functions of Tracks and TracksCollection. Removed the ::: dependencies. added an alias to over.Rd, to make R CMD check clean. commit a249142559134940ce878e2bf98cb79afbc21d80 Merge: 0b35b47 0ef1509 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Oct 15 16:01:37 2013 +0200 Merge branch 'master' of https://github.com/k2sk8s/spacetime commit d7b13507d9e5f98d10d3d32f746c230f1919bd08 Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 15 15:43:11 2013 +0200 Removed redundant coercion method. commit 4b1c8ec6b87c57e6e10e51fd9fb6a859f69bdd0d Merge: 0ef1509 0b35b47 Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 15 14:18:49 2013 +0200 Merge remote-tracking branch 'upstream/master' commit 0ef1509941d09ae2a4d88d47b19ceadac9d8322e Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 15 14:00:15 2013 +0200 Added coercion methods to allow for converting trajectories to SpatialPointsDataFrame. commit 2e27ba0b23d19db0ccc837f8e58ed3673fc3f05b Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 15 13:40:25 2013 +0200 Added coercion methods to allow for converting trajectories to spatio-temporal points. commit bccfa1d231ac2239d534e28639229d7e3f2cee7a Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 15 12:49:20 2013 +0200 Added coercion methods to allow for converting trajectories to time series. Code cleanups. commit 38e5d8c263d809819044eb6ec9fe0ff9ef2996df Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 15 11:09:19 2013 +0200 Added over method for Track objects. Fixed coercion method. commit 74112f86fec196f294e7f57a637acbf0cf88592e Author: Bene Luks <b.luks@gmx.de> Date: Tue Oct 15 10:45:42 2013 +0200 Added rgeos as a required dependency to make any over methods for trajectory classes work flawlessly. commit 0b35b472cc0d9bb09cdcca31b5119f9bf7ab18ae Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Oct 15 09:46:55 2013 +0200 update minor version, date, URL, contributor commit a32e458c4891247a2c711a729f53b662ae843da2 Author: Bene Luks <b.luks@gmx.de> Date: Mon Oct 14 16:39:33 2013 +0200 Fixed selection method to correctly address selections such as Tr[list(integer(0), 2)]. Code cleanups. commit 5f1a147b355593a1e3eb36231c1e46d852e1579e Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Oct 13 18:56:15 2013 +0200 clean up for R CMD check commit c41946be5ec4687700929ce5a94569db4edd212a Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Sun Oct 13 18:27:11 2013 +0200 added c, stack and unstack methods, and example code commit ef16d17c182c911f9e8e5be2ac0b2723fe09d840 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 11 23:02:49 2013 +0200 R CMD check is clean again commit aa097ed255fb4b238f323cfd2d33cbcf4f8ad6fc Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 11 17:18:22 2013 +0200 added proj4string and coerce to SpatialLines* methods commit fbb085878bf68cffcba0dbe7166b70028aae0040 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Oct 10 12:06:38 2013 +0200 tested list selection; updated over signatures. commit e2c4b284f17de55dd4ebfd74ab0ea3360458f483 Author: Bene Luks <b.luks@gmx.de> Date: Wed Oct 9 20:29:32 2013 +0200 Added coercion methods. Arbitrary selection of ID/Track combinations are now possible. commit 3e145a0e9d93e7a70a539a46b439df572a114e30 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Oct 4 14:42:43 2013 +0200 corrected plot x/ylim values, added default names commit 1be33fdbed6560773c79f376cdbb37e72fab3620 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Oct 2 16:45:04 2013 +0200 added Track IDs; corrected direction calculations commit 7988d6db57a42a0970668e4a9c95ccc4a5aa7d22 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Tue Oct 1 19:57:57 2013 +0200 added sp.layout to spplot for TracksCollection commit 109b44134f74dddcd19814b57ac92cb6ea8404c5 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Mon Sep 30 23:35:09 2013 +0200 added segments class; added simple [ selection methods commit 4f142a943853cf29792cc3c0c9b8730e3d616b02 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Sep 27 18:00:32 2013 +0200 added dim methods, improved stplot. commit 7c490847192267ab1d87c4b1c5358361efc2b8b9 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Fri Sep 27 16:49:23 2013 +0200 plotting trajectories, both stplot and plot; example in doc. commit 20a55bb3d49442e1d623cc74906a28617a4b79ad Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Sep 26 23:16:46 2013 +0200 more stplot work for TracksCollection objects, xx2seg conversions commit 2b8b7346691799c8ca7fe10d2233719cce1762d1 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Sep 26 17:34:53 2013 +0200 more on trajectories; some plotting fn commit 3bbfc938653b676a2c965addc3de1ec769034932 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Thu Sep 26 16:11:07 2013 +0200 trajectory work commit b4ebdaeb9b351a5dd974f482a35d06660d782607 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Sep 25 20:58:26 2013 +0200 work on Tracks commit 1e1c9260af2f508d5fe15f1732ad84b5b928faaf Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Sep 25 18:03:12 2013 +0200 removed svn; added Tracks files commit bb3fc2124386914751e3bf84ab570948cc9ba889 Author: edzer <edzer.pebesma@uni-muenster.de> Date: Wed Sep 25 17:20:51 2013 +0200 added urls commit b642fddf8c720b51784d2b6c1d16fc156f634696 Merge: 7d8ee87 95e1e2a Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Sep 25 17:11:43 2013 +0200 Merge github.com:edzer/spacetime commit 7d8ee87af202e98a80665798df930188fb187bf1 Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Sep 25 16:04:57 2013 +0200 initial commit commit eba0f2d720ce7053d97a728fe1b7844a8f25874d Author: Edzer Pebesma <edzer.pebesma@uni-muenster.de> Date: Wed Sep 25 16:03:17 2013 +0200 first commit commit 95e1e2aa46c55d7dfead687f93877b1d62d939bb Author: edzer <edzer.pebesma@uni-muenster.de> Date: Wed Sep 25 07:02:03 2013 -0700 Initial commit 2013-09-20 15:47 ben_graeler * spacetime/R/STSDF-methods.R: - fixed minor issue for single points in space and time in coordinates method 2013-09-20 12:34 edzer * spacetime/R/STFDF-methods.R, spacetime/R/STIDF-methods.R, spacetime/R/STSDF-methods.R: added [ methods for STF, STS, STI; needs some testing 2013-09-19 09:33 jinlong * trajectories/R/aggregate.R, trajectories/R/crop.R, trajectories/data/geolife_sample.RData, trajectories/inst/geolife_reader.R, trajectories/man/geolife_sample.Rd, trajectories/vignettes/demo.Rmd: - Revised crop(); - Revised aggregate(); - Updated geolife_sample.RData - Added demo.Rmd 2013-09-18 06:53 jinlong * trajectories/R/summary.R, trajectories/data/geolife_sample.RData, trajectories/inst/geolife_reader.R, trajectories/man/geolife_sample.Rd, trajectories/tests/crop_and_plot_demo.R, trajectories/tests/crop_demo.Rout.save: - summary() function updated - geolife_reader.R updated with the computation of trajectory stats - geolife_sample dataset updated 2013-09-16 07:50 edzer * trajectories/R/crop.R, trajectories/tests/aggregate_demo.Rout.save: take right coordinates 2013-09-16 07:46 edzer * trajectories/R/crop.R: right coordinates 2013-09-16 07:40 edzer * trajectories/tests/STItoSTTDFdemo2.Rout.save: test output 2013-09-16 06:59 jinlong * trajectories/tests/crop_and_plot_demo.R: - updated the data for demo 2013-09-16 05:41 jinlong * trajectories/data/geolife_sample.RData, trajectories/inst/geolife_reader.R, trajectories/man/geolife_sample.Rd, trajectories/tests/crop_and_plot_demo.R, trajectories/tests/crop_and_plot_demo.Rout.save, trajectories/tests/geolife_reader.R, trajectories/vignettes, trajectories/vignettes/sttdf.png, trajectories/vignettes/sttdf_cropped_w_pol.png, trajectories/vignettes/sttdf_w_pol.png: - geolife sample dataset added. 2013-09-16 05:07 jinlong * trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R, trajectories/R/crop.R, trajectories/notes, trajectories/tests/STItoSTTDFdemo.R, trajectories/tests/STItoSTTDFdemo2.R, trajectories/tests/STItoSTTDFdemo2.Rout.save, trajectories/tests/STTDF_selection.R, trajectories/tests/aggregate_demo.R, trajectories/tests/aggregate_demo.Rout.save, trajectories/tests/crop_and_plot_demo.R, trajectories/tests/crop_and_plot_demo.Rout.save, trajectories/tests/crop_demo.R, trajectories/tests/crop_demo.Rout.save, trajectories/tests/cut.STTDF.SpatialPolygons.R, trajectories/tests/geolife_reader.R, trajectories/tests/over.STTDF.SpatialPolygons.R, trajectories/tests/read.R, trajectories/tests/summary_and_plot_demo.R, trajectories/tests/traj_sample.R, trajectories/tests/traj_stats.R: - output files added - tests files corrected - bug fixed in crop - geolife_reader.R revised - directory cleaned 2013-09-11 10:58 edzer * spacetime/DESCRIPTION: version bump 2013-09-10 13:55 edzer * spacetime/NAMESPACE, spacetime/R/ST-methods.R, spacetime/R/coerce.R: setMethod geometry export geometry and aggregate corrected coerce STIDF->STTDF 2013-09-09 08:37 edzer * spacetime/vignettes/stpg.Rnw: back to 2.14.x compatibility 2013-09-06 07:41 edzer * trajectories/NAMESPACE: exportMethod plot 2013-09-06 07:27 edzer * trajectories/tests/STItoSTTDFdemo.Rout.save: redid test output 2013-09-06 07:24 edzer * trajectories/tests/STItoSTTDFdemo.R: fixed random number generator seed 2013-09-06 07:22 edzer * spacetime/DESCRIPTION, trajectories/tests/STItoSTTDFdemo.Rout.save: added test output 2013-09-06 07:17 edzer * trajectories/tests/STItoSTTDFdemo.R, trajectories/tests/crop_demo.R: added libraries 2013-09-06 07:12 edzer * trajectories/test, trajectories/tests: directory name change 2013-09-06 06:59 edzer * trajectories/man/summary.Rd: addressed the NOTE by R CMD check 2013-09-06 06:49 jinlong * trajectories/R/aggregate.R, trajectories/test/merge_not_working.R, trajectories/test/sample_not_working.R: - Fix bug in aggregate.R 2013-09-05 09:28 edzer * spacetime/DESCRIPTION, spacetime/R/Class-ST.R, spacetime/R/Class-STFDF.R, spacetime/R/Class-STIDF.R, spacetime/R/Class-STSDF.R, spacetime/R/Class-STTDF.R: removed slots = c(...) notation, to keep R 2.14 compatibility. 2013-09-03 09:50 edzer * spacetime/DESCRIPTION: version downgrade 2013-09-03 09:44 edzer * spacetime/DESCRIPTION, spacetime/man/eof.Rd, spacetime/man/stinteraction.Rd, spacetime/tests/Examples/spacetime-Ex.Rout.save: issues caused by gstat 1.0-17 2013-09-03 07:19 jinlong * trajectories/NAMESPACE, trajectories/R/aggregate.R, trajectories/R/crop.R, trajectories/R/cut.STTDF.SpatialPolygons.R, trajectories/man/aggregate.Rd, trajectories/man/cut.STTDF.SpatialPolygons.Rd, trajectories/test/aggregate_demo.R, trajectories/test/crop_demo.R, trajectories/test/summary_and_plot_demo.R: - Add aggregate() function; - Rewrite crop() function; - Delete cut.STTDF.SpatialPolygons() function; - Modify the demo for aggregate(), summary(), plot(), and crop() 2013-09-02 13:06 edzer * spacetime/.Rbuildignore, spacetime/DESCRIPTION, spacetime/NAMESPACE, spacetime/R/aggregate.R, spacetime/man/ST-class.Rd, spacetime/man/STFDF-class.Rd, spacetime/man/STSDF-class.Rd, spacetime/man/STTDF-class.Rd, spacetime/man/fires.Rd, spacetime/man/na.Rd, spacetime/man/over.Rd, spacetime/man/unstack.Rd, spacetime/tests/Examples/spacetime-Ex.Rout.save, spacetime/tests/basic.R, spacetime/tests/basic.Rout.save, spacetime/tests/over.R, spacetime/tests/over.Rout.save, spacetime/tests/rw.R, spacetime/tests/stconstruct.R, spacetime/tests/stconstruct.Rout.save, spacetime/tests/traj.Rout.save, spacetime/tests/wind.R, spacetime/tests/wind.Rout.save, spacetime/vignettes/jss816.Rnw, spacetime/vignettes/sto.Rnw: sp is now imported, not loaded; adjusted all examples and demos. 2013-08-30 19:46 edzer * spacetime/DESCRIPTION: addressed CRAN NOTE: removed duplicates between Suggests: and Imports: 2013-08-13 06:07 jinlong * trajectories/NAMESPACE, trajectories/R/crop.R, trajectories/R/over.STTDF.STTDF.R, trajectories/R/over.STTDF.SpatialPolygons.R, trajectories/R/plot.R, trajectories/R/summary.R, trajectories/man/crop.Rd, trajectories/man/over.STTDF.STTDF.Rd, trajectories/man/over.STTDF.SpatialPolygons.Rd, trajectories/notes, trajectories/test/crop_demo.R, trajectories/test/read.R, trajectories/test/summary_and_plot_demo.R: - crop() added - summary() fixed with invalid data attributes 2013-08-05 07:40 jinlong * trajectories/demo/00Index, trajectories/demo/STItoSTTDFdemo.R, trajectories/demo/STItoSTTDFdemo2.R, trajectories/demo/STTDF_selection.R, trajectories/demo/cut.STTDF.SpatialPolygons.R, trajectories/demo/geolife_reader.R, trajectories/demo/over.STTDF.SpatialPolygons.R, trajectories/demo/read.R, trajectories/demo/traj_sample.R, trajectories/demo/traj_stats.R, trajectories/notes, trajectories/test, trajectories/test/STItoSTTDFdemo.R, trajectories/test/STItoSTTDFdemo2.R, trajectories/test/STTDF_selection.R, trajectories/test/cut.STTDF.SpatialPolygons.R, trajectories/test/geolife_reader.R, trajectories/test/over.STTDF.SpatialPolygons.R, trajectories/test/read.R, trajectories/test/traj_sample.R, trajectories/test/traj_stats.R: - Move all files in demo folder into test folder; - Update the note; 2013-08-05 07:11 jinlong * trajectories/R/STItoSpatialLines.R, trajectories/R/plot.R, trajectories/R/summary.R, trajectories/man/STItoSpatialLines.Rd, trajectories/man/plot.Rd, trajectories/man/summary.Rd: - Missing files added 2013-08-05 07:11 jinlong * trajectories/NAMESPACE, trajectories/R/cut.STTDF.SpatialPolygons.R, trajectories/notes: - Added plot.R, summary.R, STItoSpatialLines.R - Modified cut.STTDF.SpatialPolygons.R and STI to SpatialLines.R 2013-07-23 13:10 edzer * trajectories/man/traj_sample.Rd: alias 2013-07-23 12:55 jinlong * trajectories/DESCRIPTION, trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R, trajectories/R/STTDFtoSpatialLines.R, trajectories/R/cut.STTDF.SpatialPolygons.R, trajectories/R/over.STTDF.SpatialPolygons.R, trajectories/demo/00Index, trajectories/demo/STItoSTTDFdemo2.R, trajectories/demo/cut.STTDF.SpatialPolygons.R, trajectories/demo/traj_sample.R, trajectories/man/STTDFtoSpatialLines.Rd, trajectories/man/cut.STTDF.SpatialPolygons.Rd, trajectories/man/over.STTDF.SpatialPolygons.Rd: - cut.STTDF.SpatialPolygons.R added - STTDFtoSpatialLines.R added 2013-07-21 16:22 jinlong * trajectories/NAMESPACE, trajectories/R/over.STTDF.SpatialPolygons.R, trajectories/data, trajectories/data/traj_sample.RData, trajectories/demo/00Index, trajectories/demo/over.STTDF.SpatialPolygons.R, trajectories/demo/traj_sample.R, trajectories/man/over.STTDF.STTDF.Rd, trajectories/man/over.STTDF.SpatialPolygons.Rd, trajectories/man/traj_sample.Rd, trajectories/notes: - New dataset - over.STTDF.SpatialPolygons 2013-07-16 06:54 jinlong * trajectories/DESCRIPTION, trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R, trajectories/R/over.STTDF.STTDF.R, trajectories/demo/STItoSTTDFdemo.R, trajectories/demo/geolife_reader.R, trajectories/inst, trajectories/man/over.STTDF.STTDF.Rd, trajectories/notes: - over.STTDF.STTDF.R added 2013-07-14 07:26 jinlong * trajectories/NAMESPACE, trajectories/demo/STTDF_selection.R: - Clean package check with one warning message 2013-07-13 11:54 edzer * spacetime/vignettes/stpg.Rnw: set eval=FALSE again; updated the off-cran eval=TRUE document 2013-07-13 09:18 edzer * spacetime/vignettes/stpg.Rnw: updated vignette 2013-07-13 07:58 jinlong * trajectories/demo/00Index, trajectories/demo/STItoSTTDFdemo.R, trajectories/demo/sttdf_computation.R, trajectories/man/STItoSTTDF.Rd: - Updated the description in demo/00Index - Added comments in STItoSTTDFdemo.R 2013-07-12 09:19 edzer * trajectories/DESCRIPTION, trajectories/NAMESPACE, trajectories/demo/00Index, trajectories/man/STItoSTTDF.Rd: tidy to make check clean; import rgdal to support project(). 2013-07-12 07:56 jinlong * trajectories/DESCRIPTION, trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R, trajectories/man/STItoSTTDF.Rd: - Updated STItoSTTDF.Rd 2013-07-12 07:23 jinlong * trajectories/DESCRIPTION, trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R, trajectories/man/STItoSTTDF.Rd: - Fixed multiple bugs that preventing building the package 2013-07-11 06:23 jinlong * trajectories/NAMESPACE, trajectories/demo/STTDF_selection.R: - NAMESPACE updated - STTDF_selection.R temporarily disabled 2013-07-11 06:00 jinlong * trajectories/NAMESPACE, trajectories/R/STItoSTTDF.R, trajectories/demo/STItoSTTDF.R, trajectories/demo/STItoSTTDFdemo.R, trajectories/demo/geolife_reader.R, trajectories/man/STItoSTTDF.Rd, trajectories/notes: - notes updates - STItoSTTDF.R moved to R/ - geolife.R updated - NAMESPACE updated 2013-07-09 15:27 edzer * spacetime/DESCRIPTION, spacetime/R/Class-ST.R, spacetime/R/Class-STFDF.R, spacetime/R/Class-STIDF.R, spacetime/R/Class-STSDF.R, spacetime/R/Class-STTDF.R, spacetime/R/Class-xts.R, spacetime/R/coerce.R: changed "representation" into "contains" and "slots", as for R 3.0.0 recommendations; changed import order of xts and zoo.; changed setClass to setOldClass for S3 class registration. 2013-07-09 08:01 jinlong * trajectories/demo/STItoSTTDF.R, trajectories/demo/geolife_reader.R, trajectories/man/STItoSTTDF.Rd, trajectories/notes: - notes updated - multiple updated for the R scripts in demo directory 2013-07-09 06:44 jinlong * trajectories/demo/STItoSTTDF.R, trajectories/man/STItoSTTDF.Rd, trajectories/notes: - Updated on notes - Added STItoSTTDF.Rd 2013-07-08 07:41 jinlong * trajectories/demo/STItoSTTDF.R, trajectories/demo/geolife_reader.R, trajectories/demo/sttdf_computation.R, trajectories/notes: - STItoSTTDF.R added - geolife_reader.R added - STTDF_computation.R modified - notes updated
2015-05-30Bump PKGREVISION.ryoon1-2/+3
* Fix build under NetBSD 6.1.5. Newer texinfo is required. From wen@.
2015-05-30Update to 2.01.37wen2-6/+6
Upstream changes: 2015-03-18 11:28 rsbivand * DESCRIPTION, src/ptinpoly.c: tidy 2015-02-03 19:28 rsbivand * NAMESPACE: tidy 2014-10-03 12:52 rsbivand * DESCRIPTION, R/inout.S: inout 2014-09-30 15:55 rsbivand * ChangeLog, inst/ChangeLog: tidy 2014-09-30 15:51 rsbivand * DESCRIPTION, R/inout.S, src/inpip.f: logical to integer inpip.f 2013-08-30 14:45 rsbivand * ChangeLog, inst/ChangeLog: tidy 2013-08-30 14:44 rsbivand * DESCRIPTION: tidy 2013-08-29 14:26 rsbivand * .Rbuildignore: tidy
2015-05-30Update to 1.1.0wen2-6/+6
Upstream changes: 2015-04-24 08:59 edzer * ChangeLog, R/aggregate.R: aggregate: add drop_lower_td = TRUE to gIntersection call 2015-04-24 08:57 edzer * inst/ChangeLog: tidy 2015-04-24 07:42 rsbivand * R/CRS-methods.R: change to nzchar 2015-04-24 07:33 rsbivand * R/CRS-methods.R, R/Class-Spatial.R, R/SpatialLines-methods.R, R/SpatialPolygons-methods.R, R/projected.R: change to nzchar 2015-04-23 17:56 rsbivand * R/CRS-methods.R: R-devel needs !is.na(projargs) in CRS for lazy loading 2015-04-23 14:36 edzer * man/as.SpatialPolygons.GridTopology.Rd: removed non-working example lines 2015-04-23 10:47 rsbivand * R/SpatialPolygonsDataFrame-methods.R, inst/include/sp_xports.c, src/sp_xports.c: SpatialPolygonsDataFrame error message 2015-04-21 06:29 edzer * man/spplot.Rd: modified example 2015-04-20 19:16 edzer * R/spplot.R: more spplot fixes 2015-04-20 18:58 edzer * R/spplot.R, man/spplot.Rd: more patches from Josh O'Brien 2015-04-19 17:10 edzer * DESCRIPTION: add Josh O'Brien to the ctb list 2015-04-19 17:04 edzer * R/spplot.R, man/spplot.Rd: corrections to sp.layout processing, with help from Josh O'Brien 2015-04-16 19:16 edzer * .Rbuildignore, ChangeLog, build-prep.sh, build-release.sh: add build-release script, so that not every build triggers an svn `tidy' commit 2015-04-16 19:15 edzer * inst/ChangeLog: tidy 2015-04-16 19:14 edzer * inst/ChangeLog: tidy 2015-04-16 17:08 rsbivand * inst/ChangeLog: tidy 2015-04-16 16:39 edzer * R/aggregate.R: add comments to somewhat dense code 2015-04-16 14:38 edzer * R/aggregate.R: break when IDs contain space characters 2015-04-16 12:44 rsbivand * inst/ChangeLog: tidy 2015-04-16 12:44 rsbivand * inst/ChangeLog: tidy 2015-04-16 10:01 edzer * .Rbuildignore, R/SpatialPolygonsDataFrame-methods.R, R/aggregate.R, man/aggregate.Rd: correct SpatialPolygonsDataFrame subsetting with character argument add area-weighted aggregation, as an option to sp::aggregate 2015-04-14 21:36 edzer * ChangeLog, R/Spatial-methods.R, build-prep.sh: warn when data.frame is assigned to attribute vector 2015-04-14 13:58 edzer * inst/ChangeLog: tidy 2015-04-13 17:38 edzer * inst/ChangeLog: tidy 2015-04-13 17:35 edzer * ChangeLog, inst/ChangeLog, inst/include/sp.h, src/sp.h, src/sp.h.in: tidy 2015-04-13 17:34 edzer * ChangeLog, inst/ChangeLog, inst/include/sp_xports.c, src/sp_xports.c: tidy 2015-04-13 17:23 edzer * ChangeLog, inst/ChangeLog: tidy 2015-04-13 17:19 edzer * ChangeLog, inst/ChangeLog: tidy 2015-04-13 15:29 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-04-13 15:28 rsbivand * .Rbuildignore, ChangeLog, build-prep.sh, svn2cl.xsl: move to distributed svn2cl 2015-04-13 10:57 edzer * inst/include/sp_xports.c, src/sp_xports.c: tidy 2015-04-13 08:00 rsbivand * src/sp.h.in: add sp/src/sp.h.in 2015-04-13 07:49 edzer * src/pip.c, src/pip2.c, src/sp_xports.c: add const qualifiers, tidy sp_xports.c 2015-04-09 19:17 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-04-09 19:16 rsbivand * .Rbuildignore, ChangeLog, DESCRIPTION, build-prep.sh, inst/ChangeLog: tidy 2015-04-09 19:10 rsbivand * .Rbuildignore: devel check issues (urls) 2015-04-09 19:07 rsbivand * build-prep.sh, inst/include/sp.h, inst/include/sp_xports.c: adding build-prep.sh 2015-04-09 17:09 rsbivand * DESCRIPTION, man/meuse.Rd, man/panel.Rd, man/spDistsN1.Rd, man/spplot.Rd: devel check issues (urls) 2015-04-09 13:17 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-04-09 13:16 rsbivand * man/Spatial-class.Rd, man/SpatialLines-class.Rd, man/SpatialPoints-class.Rd, man/SpatialPolygons-class.Rd: document plot methods 2015-04-09 11:14 rsbivand * ChangeLog, inst/ChangeLog: tidy 2015-04-09 11:11 rsbivand * DESCRIPTION, inst/include/sp.h, inst/include/sp_xports.c, man/spplot.Rd, src/init.c, src/pip.c, src/pip2.c, src/sp.h, src/sp_xports.c, tests/fail1.R, tests/fail1.Rout.save: duplicate 2015-04-08 19:19 rsbivand * man/CRS-class.Rd, man/degaxis.Rd, man/is.projected.Rd, man/nowrapSpatialLines.Rd, man/recenter-methods.Rd, src/sp_xports.c: first cut duplicate and +ellps in man/* 2015-03-30 15:30 edzer * man/spplot.Rd: add spplot example with floating legend 2015-03-30 07:50 edzer * man/sp-deprecated.Rd: tidy; forgot overlay method definition 2015-03-30 07:39 edzer * DESCRIPTION, R/Spatial-methods.R, R/overlay.R, man/sp-deprecated.Rd: remove overlay method instances, keep definition for raster 2015-03-28 11:53 edzer * man/over.Rd, man/spplot.Rd: tidy examples 2015-03-27 23:18 edzer * R/spplot.R, man/spplot.Rd: make `first' argument work again; add examples of simpler sp.layout. 2015-03-22 19:54 edzer * R/spplot.R: argument `first' was not passed; spotted by Josh O'Brien 2015-03-20 08:13 edzer * R/spplot.R: bug on plot order, reported by Josh O'Brien 2015-03-17 18:40 edzer * R/bubble.R, demo/gallery.R: update sppanel usage 2015-03-17 18:16 edzer * R/spplot.R: col specification for panel.polygonsplot, by Josh O'Brien 2015-03-16 16:51 edzer * man/spplot.Rd: typo 2015-03-15 15:04 edzer * NAMESPACE, R/Spatial-methods.R, R/spplot.R, man/spplot.Rd: refactor sp.layout argument; drop requirement to name function, allow mixing Spatial* objects; introduce sppanel generic. 2015-03-15 11:38 edzer * R/spplot.R, demo/depend.R: sp.lines now obeys col argument longer than one, email from Josh O'Brien 2015-03-10 14:39 edzer * demo/depend.R: change cran mirror 2015-03-09 20:54 edzer * DESCRIPTION, R/SpatialPointsDataFrame-methods.R, R/overlay.R, tests/fail1.Rout.save, tests/pass1.R, tests/pass1.Rout.save: add back overlay; tidy SpatialPointsDataFrame(), add tests 2015-03-09 11:53 edzer * R/SpatialPointsDataFrame-methods.R, man/SpatialPoints.Rd, tests/fail1.Rout.save, tests/pass1.R, tests/pass1.Rout.save: match.ID is now missing in SpatialPointsDataFrame(), a warning is given if matching is applied but match.ID was not set; see the examples in the docs. 2015-03-09 10:36 rsbivand * DESCRIPTION: remove overlay.R from Collate 2015-03-09 10:20 edzer * R/SpatialPointsDataFrame-methods.R, man/SpatialPoints.Rd: match.ID defaults to TRUE if coords is not a data.frame, otherwise FALSE (for backward compatibility) 2015-03-09 10:07 edzer * DESCRIPTION, R/CRS-methods.R, R/Class-CRS.R, R/Class-SpatialGrid.R, R/Class-SpatialGridDataFrame.R, R/Class-SpatialPoints.R, R/Class-SpatialPointsDataFrame.R, R/Spatial-methods.R, R/SpatialGridDataFrame-methods.R, R/SpatialLines-methods.R, R/SpatialPoints-methods.R, R/SpatialPointsDataFrame-methods.R, R/SpatialPolygons-methods.R, R/rbind.R, R/subset.R, man/sp-deprecated.Rd, src/sp_xports.c, tests/pass1.R, tests/pass1.Rout.save: improve coordinates() logic to keep row.names of data.frame's improve support for zero-feature objects (subset, rbind) add rgdal check on CRS() if rgdal is installed, instead of loaded have $<- promote a SpatialXxx to a SpatialXxxDataFrame Version bump to 1.1-0 2015-03-05 23:58 edzer * NAMESPACE: remove duplicated gridat 2015-03-02 17:30 edzer * vignettes/over.Rnw: update `over' vignette 2015-03-02 15:04 edzer * vignettes/over.Rnw: update 2015-03-02 12:57 edzer * R/over.R, man/over.Rd: call `over' methods in rgeos automatically 2015-03-02 11:19 edzer * R/CRS-methods.R, R/Spatial-methods.R, man/spTransform.Rd, tests/fail1.Rout.save: load rgdal namespace when needed for spTransform, clean up methods 2015-03-02 10:21 edzer * R/Spatial-methods.R, man/Spatial-class.Rd: allow $<- on geometry-only objects, promoting them to *DataFrame 2015-02-26 21:00 edzer * DESCRIPTION, R/overlay.R, R/projected.R, R/spsample.R, man/is.projected.Rd, man/sp-deprecated.Rd: remove overlay() methods altogether, leaving generic for raster tidy & clean projected.R add warning to spsample.SpatialLines when data are longlat 2015-02-20 14:36 rsbivand * DESCRIPTION: add sp contributors 2015-02-19 21:14 edzer * R/SpatialGrid-methods.R: further optimize of plot.SpatialPixels 2015-02-19 17:25 edzer * R/SpatialGrid-methods.R, man/SpatialPixels-class.Rd: reduce number of segments() calls to inprove performance 2015-02-19 15:57 edzer * .Rbuildignore, R/SpatialGrid-methods.R, man/SpatialPixels-class.Rd: plotting SpatialGrid or SpatialPixels now plots a grid, unless grid = FALSE 2015-02-19 14:05 edzer * DESCRIPTION, R/Class-CRS.R, R/Class-GridTopology.R, R/Class-Spatial.R, R/Class-SpatialGrid.R, R/Class-SpatialGridDataFrame.R, R/Class-SpatialLines.R, R/Class-SpatialLinesDataFrame.R, R/Class-SpatialPoints.R, R/Class-SpatialPointsDataFrame.R, R/Class-SpatialPolygons.R, R/Class-SpatialPolygonsDataFrame.R, R/SpatialGrid-methods.R, man/over.Rd: increase dependency on R >= 3.0.0, replace representation by slots; remove prototypes from class definitions 2015-01-24 18:54 edzer * man/addattr.Rd, man/over.Rd, man/spsample.Rd: cleanup references to overlay 2015-01-23 21:15 edzer * man/SpatialPoints.Rd: correct docs regarding what match.ID exactly does 2015-01-22 12:27 edzer * R/SpatialPoints-methods.R, R/spsample.R, man/spsample.Rd, tests/grid.Rout.save: fix SpatialPointsDataFrame match.ID issue, raised in https://stat.ethz.ch/pipermail/r-sig-geo/2015-January/022242.html; fix makegrid bug in case of negative bbox 2015-01-19 20:36 edzer * R/spplot.R: sp.panel.layout is now also called after the points are plotted 2015-01-18 22:17 edzer * DESCRIPTION, R/spplot.R, man/spplot.Rd: bump version; allow list for colorkey argument in spplot 2015-01-15 12:10 edzer * DESCRIPTION: Title Case Title 2014-12-23 19:56 edzer * inst/ChangeLog, man/meuse.riv.Rd: add plot to example 2014-12-23 14:57 edzer * data/meuse.area.rda, demo/meuse.R, man/meuse.riv.Rd: add meuse.area outline of meuse.grid 2014-12-05 14:52 edzer * R/over.R: add comment 2014-12-05 14:51 edzer * R/SpatialPoints-methods.R, R/SpatialPointsDataFrame-methods.R: add error messages when NA values occur in SpatialPoints objects 2014-11-17 14:32 edzer * R/merge.R: y -> dy 2014-11-16 19:12 edzer * DESCRIPTION, R/merge.R, man/merge.Rd: add duplicateGeoms argument to merge(), add Robert as ctb 2014-11-09 11:21 edzer * R/CRS-methods.R, R/disaggregate.R, inst/ChangeLog: release candidate 1.0-16 2014-11-09 10:45 edzer * inst/ChangeLog: ready for release 2014-09-23 19:59 edzer * R/aggregate.R: add call to match.fun() 2014-09-20 14:11 edzer * tests/sel.Rout.save: named results: make test align with change in over 2014-09-19 20:28 edzer * R/over.R, vignettes/over.Rnw: the output list or vector of over() is now named 2014-08-31 11:16 edzer * R/Spatial-methods.R, R/SpatialLines-methods.R, R/SpatialPoints-methods.R, R/image.R: plot now accepts more of plot.default's behaviour 2014-08-22 22:07 edzer * R/aggregate.R, R/disaggregate.R, R/sp_spat1.R: moved require(xx); foo() into requireNamespace(xx) xx:foo() calls, see http://cran.r-project.org/doc/manuals/r-patched/R-exts.html#Suggested-packages 2014-08-10 19:07 edzer * R/zerodist.R, inst/ChangeLog, man/zerodist.Rd, src/init.c, src/sp.h, src/zerodist.c: add memcmp option to zerodist() family, to allow for double arithmetic fall back
2015-05-30Update to 1.4.21wen2-6/+6
Upstream changes: 30 March 2015: statmod 1.4.21 - qinvgauss() now treats input arguments of different lengths or NA parameter values more carefully. - elda() now gracefully removes structural zeros, i.e., rows where the number of cells or the number of assays is zero. - S3 print and plot methods for "limdil" class now registered. - Use of require("tweedie") in the qres.tweedie() code replaced by requireNameSpace("tweedie").