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2013-11-04Use -Wl for rpath options extracted from Fortran linker.joerg2-1/+20
2013-11-01Revision bump associated with the update of lang/ocaml to version 4.01.jaapb1-2/+2
2013-10-29Install LaTeX files into share/texmf-dist, not share/texmf.minskim2-6/+7
The latter has been deprecated in TeX Live 2013.
2013-10-28When extracting rpath options from the Fortran linker, prefix them withjoerg2-1/+20
-Wl before passing them back to CC.
2013-10-28+ minisatasau1-1/+2
2013-10-28Import MiniSat version 2.2.0 as math/minisat.asau5-0/+58
MiniSat is a minimalistic, industrial strength, open-source SAT solver, developed to help researchers and developers alike to get started on SAT.
2013-10-27Update to 1.12.8:wiz3-8/+8
Gnumeric 1.12.8 Andreas: * Update/fix documentation [#708679][#707075][#708556] * Fix paste into locked cells [#702292] Jean: * Fix radio buttons behavior in covariance dialog. [#707595] * Add a border around font selector in cell format dialog. [#708567] Morten: * Fix fuzzed file crash. [#707875] * Use lighter green for function markers. [#708573] * Fix item cursor problem. [#709320] * Fix win32 compilation.
2013-10-27Drop -frename-registers. -finline-functions is the default for optimisedjoerg3-1/+33
builds anyway.
2013-10-27When extracting rpath options from the Fortran linker, qualify them withjoerg2-1/+20
-Wl before passing them to CC.
2013-10-26Update ruby-spreadsheet to 0.9.1.obache2-6/+6
### 0.9.1 / 24.10.2013 Date: Thu Oct 24 09:41:50 2013 +0300 * Add support for worksheet visibility
2013-10-24Mark remaining packages not support DESTDIR as BROKEN as decidedwiz1-1/+2
by pkgsrc-pmc. If you are interested in one of these, please fix it before 2013Q4.
2013-10-20Pass rpath option with -Wl prefix.joerg1-2/+2
2013-10-16Update to 0.12.1markd2-7/+7
SciPy 0.12.1 is a bug-fix release with no new features compared to 0.12.0. The single issue fixed by this release is a security issue in ``scipy.weave``, which was previously using temporary directories in an insecure manner under certain circumstances.
2013-10-10Does support destdir, mark it as such.wiz1-6/+3
2013-10-10I see no reason why this package is marked with PKG_DESTDIR_SUPPORT=none,wiz1-3/+1
packages fine for me. Remove it.
2013-10-10Recursive revbump from pango-1.36.0ryoon17-33/+34
2013-10-09recursive bump for libmng-2.0.2 shlib major bump and dependency changewiz3-6/+6
2013-10-09Use CMake builtin CMAKE_INSTALL_MANDIR for mandir.obache3-6/+5
2013-10-06Update to 1.12.7:wiz2-7/+6
Gnumeric 1.12.7 Morten: * Extend BESSELJ and BESSELY to handle fractional order. [#706720] * Fix crash with split pane. [#707047] -------------------------------------------------------------------------- Gnumeric 1.12.6 Andreas: * Fix crash on corrupted files. [#706526] Morten: * Fix crash on corrupted files. [#706413] [#706417] * Fix save style performance issue. [#699045]
2013-10-06Update to 3.1.4:wiz2-8/+8
Changes since 3.1.3: Bug 620: Fix robustness and performance issues in JacobiSVD::solve. Bug 613: Fix accuracy of SSE sqrt for very small numbers. Bug 608: Fix sign computation in LDLT. Fix write access to CwiseUnaryView expressions. Fix compilation of transposeInPlace() for Array expressions. Fix non const data() member in Array and Matrix wrappers. Fix a few warnings and compilation issues with recent compiler versions. Documentation fixes.
2013-10-06Remove obsolete entry from desktop file that generates warnings duringwiz5-10/+26
package installation. Bump PKGREVISION.
2013-09-18Update ruby-spreadsheet to 0.9.0.obache3-10/+12
### 0.9.0 / 16.09.2013 * Author: Pavel <pavel.evst@gmail.com> Date: Mon Sep 16 14:02:49 2013 +0700 * Test cases for Worksheet#margins, Worksheet#pagesetup, Workbook#delete_worksheet. Fix bugs related to it. * Page margins reader/writter * Markdownify GUIDE * Add page setup options (landscape or portrait and adjust_to)
2013-09-15Deal with C++11 vs TR1 headers.joerg2-1/+20
2013-09-10Don't fail on logical op mixing with clang.joerg1-2/+4
2013-09-02Revbump after cairo updateadam17-32/+34
2013-09-01recursive bump from hdf5 shlib major bump.obache9-15/+18
2013-08-31Bump dependency as needed.joerg1-2/+2
2013-08-31Update R-maps to 2.3-3. No Change Log.joerg2-6/+6
2013-08-31Update to R-mapproj-1.2-1. Changes unknown, but fixes build with Rjoerg2-7/+7
3.0.1.
2013-08-30Update to R-RandomField-2.0.66. No ChangeLog, but fixes build withjoerg2-7/+7
R-3.0.1.
2013-08-30Update to R-hwde-0.63:joerg2-6/+6
o The vignette hwde.Rnw has been modified to add missing text and to conform to current Sweave markup conventions o Code for the functions hwde() and make.contrasts() has been modified so that R CMD check no longer reports "No visible binding for global variable 'oset'."
2013-08-30Update to R-httpRequest-0.0.9. No ChangeLog, but fixes build withjoerg2-6/+6
R-3.0.1.
2013-08-30Create wildcard NAMESPACE file to fix build with R 3.0.1.joerg1-1/+4
2013-08-30Update to R-bitops-1.0-6. No ChangeLog, but fixes build with R-3.0.1.joerg2-6/+6
2013-08-26Update ruby-spreadsheet to 0.8.9.obache2-6/+6
=== 0.8.9 / 24.08.2013 Author: Doug Renn <renn@nestegg.com> Date: Fri Aug 23 17:10:24 2013 -0600 * Work around to handle number formats that are being mistaken time formats
2013-08-25Update to 1.11wen2-7/+8
Add missing BUILD_DEPENDS Upstream changes: 1.07 Thu Jan 19 2012 - synchronised the autoseeding mechanism with that of Math::Random::MT 1.08 Mon May 28 2012 - synchronised the autoseeding mechanism with that of Math::Random::MT that is more elegant and portable 1.09 Mon Jun 4 2012 - added the irand() function to draw random integers, as in Math::Random::MT 1.10 Mon Aug 6 2012 - made set_seed() return the seed, as does Math::Random::MT - migrated test suite to Test::More and Test::Number::Delta 1.11 - Improvement of unit tests
2013-08-25Update to 6.22wen2-7/+6
Upstream changes: 6.22 Tue Sep 4 14:06:20 2012 - Enhancement to shuffle() to return an array 6.21 Mon Aug 6 17:27:37 2012 - Haiku does not support non-blocking IO 6.19 Fri Jul 27 00:48:20 2012 - Prevent use of incompatible state vectors 6.18 Thu Jan 26 14:58:57 2012 - Ignore warnings from other modules during tests 6.17 Wed Jan 11 05:55:09 2012 - Require OIO 3.85 to fix some 'used only once' warnings
2013-08-25Update to 0.31wen2-6/+6
Upstream changes: 0.31 2013-08-07 - Change proof certificate documentation to reflect the new text format. - Some platforms were using __int128 when it wasn't supported. Only x86_64 and Power64 use it now. - Small speedup for ranged totient internals. - Patch MPU::GMP 0.13 giving us not quite what we expected from a small certificate. Fixed in MPU::GMP 0.14, worked around here regardless. 0.30 2013-08-06 [API Changes] - Primality proofs now use the new "MPU Certificate" format, which is text rather than a nested Perl data structure. This is much better for external interaction, especially with non-Perl tools. It is not quite as convenient for all-Perl manipulation. [Functions Added] - is_frobenius_underwood_pseudoprime - is_almost_extra_strong_lucas_pseudoprime - lucas_sequence - pplus1_factor [Enhancements] - Documentation and PP is_prime changed to use extra strong Lucas test from the strong test. This matches what the newest MPU::GMP does. This has no effect at all for numbers < 2^64. No counter-example is known for the standard, strong, extra strong, or almost extra strong (increment 1 or 2) tests. The extra strong test is faster than the strong test and produces fewer pseudoprimes. It retains the residue class properties of the strong Lucas test (where the SPSP-2 pseudoprimes favor residue class 1 and the Lucas pseudoprimes favor residue class -1), hence should retain the BPSW test strength. - XS code for all 4 Lucas tests. - Clean up is_prob_prime, also ~10% faster for n >= 885594169. - Small mulmod speedup for non-gcc/x86_64 platforms, and for any platform with gcc 4.4 or newer. [Bug Fixes] - Fixed a rare refcount / bignum / callback issue in next_prime.
2013-08-21Add -D_LCONV_C99 on SunOS to pick up extended lconv support.jperkin1-1/+3
2013-08-21update to 1.12.5drochner3-19/+6
changes: -Improve ODF import -Export custom shapes -Implement input message editing +bugfixes
2013-08-19Texinfo 5.1 fixes.jperkin3-1/+82
2013-08-15add math/py-cdecimalrichard1-1/+2
2013-08-15cdecimalrichard4-0/+39
======== The cdecimal package is a fast drop-in replacement for the decimal module in Python's standard library. Both modules provide complete implementations of Mike Cowlishaw/IBM's General Decimal Arithmetic Specification. This archive is identical to the mpdecimal package, except that library tests and documentation have been removed. For documentation, visit: http://www.bytereef.org/mpdecimal/index.html http://www.bytereef.org/mpdecimal/doc/index.html Contact: Stefan Krah <skrah@bytereef.org>
2013-08-15Update to 1.6.1wen2-6/+6
Upstream changes: Changes in version 1.6-1 write.matrix.csr() now accepts a fac argument similar to read.matrix.csr(), writing factor levels instead of the numeric codes. naiveBayes() uses a numerically more stable formula for calculating the a-posterior probabilities. predict.naiveBayes() now accepts data with predictors in an order different from the training data, and also ignores variables not in the model (especially the response variable). svm() checks whether parameters which are passed to the C-code are set to NULL to avoid segfaults.
2013-08-15Add R-plyrwen1-1/+2
2013-08-15Imported R-plyr as math/R-plyr.wen3-0/+27
plyr is a set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each pieces and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of plyr has been generously supported by BD (Becton Dickinson).
2013-08-15Update to 0.2.7wen2-6/+6
Upstream changes: Version 0.2-7 * Trivial changes (updated package fields, daj) Version 0.2-6 * Removed deprecated \synopsis in some Rd files (thanks to Prof. Ripley)
2013-08-15Update to 2.0.18wen2-6/+6
Upstream changes: Changes to Version 2.0-18 o Bug fix to boot with type="residual" o Added densityPlot() function. Changes to Version 2.0-17 o Add a variable to AMSsurvey. o Fix to residualPlots to compute lack of fit tests with missing values and glms. o Fix to residualPlots with a 0/1 variable not declared a factor. o Boxplot() now works properly with at argument passed to boxplot() via ... (contribution of Steve Ellison). o qqPlot.lm() now works with "aov" objects (fixing problem reported by Thomas Burk). o Small fixes to code and docs. Changes to Version 2.0-16 o Fixed bug in printing of hypotheses by linearHypothesis(), where numeric constants of the form 1.* or -1.* were printed incorrectly (reported by Johannes Kutsam). o Fixed a bug in showLabels() with multiple groups in the scatterplot() and scatterplotMatrix() function. o linearHypothesisTest() now tolerates newlines and tabs in hypotheses (suggestion of David Hugh-Jones). o two bugs fixed in Boot() (found by David Pain) changed argument f to f. in bootCase(). o summary.Boot(), confint.Boot() and hist.Boot() handle aliases correctly. o Boxplot.formula() now accepts more than one conditioning variable (suggestion of Christina Yassouridis). O Boxplot() now properly handles at argument passed through via ... to boxplot() (contribution of Steve Ellison). o Small fixes. Changes to Version 2.0-15 o Added an argument coef. to linearHypothesis so tests of the linear hypohtesis form can be computed without reference to a fitted model o Added a linearHypothesis.nlsList method o Added an nls method for Boot o Recode() introduced as alias for recode() to avoid name clash with Hmisc. o residualPlots for glms now ignore starting values for the computing algorithm when computing lack of fit tests; starting values previously caused an error. o Marginal Model Plots now allow conditioning on a categorical variable. Changes to Version 2.0-14 o Smoothers now given as arguments to scatterplot(), scatterplotMatrix(), residualPlots() and other functions; gamLine(), loessLine() (default), and quantregLine() smoothers provided. o linearHypothesis.mer() and Anova.mer() now consistent with pbkrtest version 0.3-2. o Small changes and fixes. Changes to Version 2.0-13 o Added point marking (id.n, etc.) to dataEllipse o Changed the default for id.method with the invTranPlot to "x". o The ncvTest has been rewritten for stability, and unneeded 'data', 'subset' and 'na.action' argument have been removed o Added new function 'Boot' that is a simple front-end to boot::boot that will be useful when bootstrapping regression models. Implemented for lm and glm, but this is likely to work for many other S3 regression models with and 'update' method, 'subset' argument. o Fixed bug in 'compareCoefs' with non-full rank models o Modified 'bootCase' to return a matrix of class c("bootCase", "matrix") so generic functions can be written to summarize these objects. o Minor changes to the returned value of showLabels to give both the label and the corresponding row number. showLabels documentation tweaked. o Improved handling of center.pch argument to ellipse() (suggestion of Rob Kushler). o New test argument for linearHypothesis.mer() and test.statistic argument for Anova.mer() for F-tests with Kenward/Roger df, provided by pbkrtest package. o Anova.mlm() now will do univariate repeated-measures ANOVA even if the error SSP matrix is singular. o hccm() will now accept a weighted linear models (suggestion of Stefan Holst Bache). o deltaMethod.default() now applies coef() and vcov() to a model for which these are supported (generalizing a suggestion by Scott Kostyshak). o Fixed handling of labels argument in scatterplot.formula() and scatterplotMatrix.formula(). o Fixed qqPlot.default() so that it honors line="none" (bug reported by Rob Kushler). o Added new default method for confidenceEllipse(), which now can construct confidence ellipses for linear functions of coefficients. o globalVariables() called for R 2.15.1 or later. o Fixed bug in logit() when percents=TRUE and largest percent is 1 (reported by Eric Goodwin). o Added radius argument to scatter3d() (suggestion of Antonino Messina). o Fixed spurious errors message in scatter3d() when groups present but surface=FALSE (reported by David L. Carlson).
2013-08-13If not building with lzo option give bogus path for lzo otherwise it willmarkd1-1/+3
be detected if its installed and build will fail.
2013-08-13Update to R 3.0.1markd10-292/+473
Changes: many new features and bug fixes. See NEWS file for details.
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