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2015-04-14Remove more references to python-2.6.wiz1-5/+2
2015-04-13Removing python26. EOL'd quite some ago and discussed a couple times onrodent2-4/+3
tech-pkg@ and pkgsrc-users@.
2015-04-13Update to 1.8.1, changes not found.wiz3-7/+13
libreoffice4 still builds for me after this update.
2015-04-12Add py-sqlite3 dependency. Fixes last issue from PR 49817.wiz1-2/+4
Bump PKGREVISION.
2015-04-11Needs gmake to process Makefile correctly. Likely fixes build on Darwin.rodent2-15/+15
Light cleanup of pkgsrc Makefile. From website: Version 3.20 released on November 15, 2014. It conducts some minor fixes.
2015-04-10Fix interpreter path in installed file.wiz1-1/+4
Bump PKGREVISION.
2015-04-10Fix packaging with py33. Disable for py26.wiz2-3/+16
2015-04-10Fix PLIST for python-2.x.wiz1-1/+2
2015-04-10Update 0.14 to 0.14.1mef2-6/+6
--------------------- version: 0.14.1 date: Thu Apr 9 12:57:23 CEST 2015 changes: - fix bug in affine expression normalization - fix handling of conditional validity constraints
2015-04-07Update to 2.5.6, in the hope it addresses PR 49817.wiz3-10/+52
Release 2.5.6 ============= Bugs fixed ---------- - Detection of the R version during setup on Win8 (issues #255 and #258) - Segmentation fault when converting :mod:`pandas` :class:`Series` with elements of type object (issue #264) - The default converter from Python (non-rpy2) objects to rinterface-level objects was producing robjects-level objects whenever the input was of type :class:`list` (discovered while fixing issue #264) - Implemented suggested fix for issue with unlinking files on Windows (issue #191) - Testing rpy2 in the absence of ipython no longer stops with an error (issue #266) Release 2.5.5 ============= Bugs fixed ---------- - Crash (segfault) when querying an R object in an R environment triggers an error (symbol exists, but associated values resolves to an error - issue #251) - Change in the signature of `rcall` was not updated in the documentation (issue #259) - Minor update to the documentation (issue #257) Release 2.5.4 ============= Bugs fixed ---------- - Filter PNG files on size, preventing empty files causing trouble to be ipython notebook rendering of graphics later on (slight modification of the pull request #39) - Fix installation left unresolved with rpy2-2.5.3 (issue #248) - Possible segfault with Python 3.4 (issue #249) Release 2.5.3 ============= Changes ------- - `setup.py` has `install_requires` in addition to `requires` in the hope to fix the missing dependency with Python 2 (:mod:`singledispatch` is required but not installed). Bugs fixed ---------- - Extracting configuration information from should now work when R is emitting a warning (issue #247) - On OS X the library discovery step can yield nothing (see issue #246). A tentative fix is to issue a warning and keep moving. Release 2.5.2 ============= Bugs fixed ---------- - String representation of :class:`robjects.R` (issue #238) - Check during `build_ext` if unsupported version of R (pull request #32) - HTMl display of columns of factors in a DataFrame (issue #236) - HTML display of factors (issue #242) Release 2.5.1 ============= Bugs fixed ---------- - Require singledispatch if Python 3.3 (issue #232) - Fixed bug when R spits out a warning when asked configuration information (issue #233) - Restored printing of compilation information when running `setup.py` - Fixed installation issue on some systems (issue #234) - Workaround obscure failure message from unittest if Python < 3.4 and :mod:`singledispatch` cannot be imported (issue #235) Release 2.5.0 ============= New features ------------ - Experimental alternative way to preserve R objects from garbage collection. This can be activated with `rinterface.initr(r_preservehash=True)` (default is `False`. - :class:`GGPlot` object getting a method :meth:`save` mirroring R's `ggplot2::ggsave()`. - The conversion system is now using generics/single dispatch. - New module :mod:`rpy2.ipython.html` with HTML display for rpy2 objects - [Experimental] New function :func:`robjects.methods.rs4instance_factory` to type RS4 objects with more specificity. Changes ------- - The script `setup.py` was rewritten for clarity and ease of maintenance. Now it only uses `setuptools`. Release 2.4.4 ============= Bugs fixed ---------- - Use `input` rather than `raw_input` in the default console callback with Python 3 (fixes issue #222) - Issues with conversions, pandas, and rmagic (fixes issue #218 and more) Release 2.4.3 ============= Bugs fixed ---------- - `geom_raster` was missing from `rpy2.robjects.lib.ggplot2` (pull request #30) - Fixed issue with SVG rendering in ipython notebook (issue #217) - Regression with `rx2()` introduced with new conversion (issue #219) - Fixed documentation (missing `import`) (issue #213) Release 2.4.2 ============= Bugs fixed ---------- - Assigning an R `DataFrame` into an environment was failing if the conversion for Pandas was activated. (Issue #207) Release 2.4.1 ============= Bugs fixed ---------- - :meth:`rpy2.ipython` fixed spurious output to notebook cells. Release 2.4.0 ============= Changes ------- - Conversion system slightly changed, with the optional conversions for :mod:`numpy` and :mod:`pandas` modified accordingly. The changes should only matter if using third-party conversion functions. - The Python 3 version is now a first class citizen. `2to3` is no longer used, and the code base is made directly compatible with Python. This lowers significantly the installation time with Python 3 (which matters when developping rpy2). - The default options to initialize R (`rpy2.rinterface.initoptions') are no longer `('rpy2', '--quiet', '--vanilla', '--no-save')` but now `('rpy2', '--quiet', '--no-save')`. - :class:`robjects.vectors.ListVector` can be instanciated from any objects with a method `items()` with the expectation that the method returns an iterable of (name, value) tuples, or even be an iterable of (name, value) tuples. New features ------------ - For instances of :class:`rpy2.robjects.Function`, the `__doc__` is now a property fetching information about the parameters in the R signature. - Convenience function :func:`rpy2.robjects.packages.data` to extract the datasets in an R pacakges - :mod:`ipython`'s `rmagic` is now part of :mod:`rpy`. To use, `%load_ext rpy2.ipython` from within IPython. - new method :meth:`rpy2.rinterface.SexpEnvironment.keys`, returnings the names in the environment as a tuple of Python strings. - convenience class :class:`robjects.packages.InstalledPackages`, with a companion function :func:`robjects.packages.isinstalled`. - new class :class:`rinterface.SexpSymbol` to represent R symbols Bugs fixed ---------- - :meth:`rpy2.rinterface.Sexp.do_slot` was crashing when the parameter was an empty string (PR #155) Release 2.3.10 ============== Bugs fixed ---------- - `setup.py build` was broken when new R compiled with OpenMP (Issue #183) Release 2.3.9 ============= - Changes in pandas 0.13.0 broke the rpy2 conversion layer (Issue #173) Release 2.3.8 ============= Bugs fixed ---------- - Crash with R-3.0.2. Changes in R-3.0.2's C API coupled to a strange behaviour with R promises caused the problem. (PR #150) Release 2.3.7 ============= Bugs fixed ---------- - ggplot2's "guides" were missing - ggplot2's "theme_classic" was missing (PR #143) - ggplot2's "element_rect" was missing (PR #144) - :func:`rpy2.interactive.packages` was broken (PR #142) Release 2.3.6 ============= Bugs fixed ---------- - Several reports of segfault on OS X (since rpy2-2.3.1 - PR #109) - More fixes in converting `DataFrames` with dates from `pandas` Relase 2.3.5 ============ Bugs fixed ---------- - Missing mapping to ggplot2's `scale_shape_discrete` function - Better handling of dates in Pandas - Constructor for POSIXct improved (and fixed) Changes ------- - The attribute :attr:`rclass` is no longer read-only and can be set (since R allows it) - Importing the module :mod:`rpy2.interactive` no longer activates event processing by default (triggering concurrency errors when used with ipython). New features ------------ - New module :mod:`rpy2.interactive.ipython` (so far plotting automatically a ggplot2 figure in the iPython's console) - It is now possible to set the :attr:`rclass`. Relase 2.3.4 ============ Bugs fixed ---------- - Spurious error when running unit tests with Python 3 and numpy installed - Missing mapping to ggplot2's `geom_dotplot` function - Warnings are not longer printed (see Changes below) Changes ------- - Bumped target version of ggplot2 to 0.9.3.1 - Warnings are not longer printed. The C-level function in R became hidden in R-3.0, and the cost of an R-level check/print is relatively high if the R code called is very short. This might evolve into printing warnings only if interactive mode in Python (if this can be checked reliably). Release 2.3.3 ============= Bugs fixed ---------- - Some of the data.frames converted from :mod:`pandas` were triggering a :class:`TypeError` when calling :func:`repr` - In :mod:`rpy2.robjects.lib.ggplot2`, a mapping to `coord_fixed` was missing (PR #120) - Using the parameter `lib_loc` in a call to :func:`rpy2.robjects.packages.importr` was resulting in an error (PR #119) - Creating a `layer` through the `rpy2.robjects.lib.ggplot2` interface did not accept parameters (PR #122) - Testing the Python version was crashing of a number of unsupported Python versions (<= 2.6) (PR #117) New features ------------ - New module pandas2ri to convert from mod:`pandas` `DataFrame` objects - New classes :class:`rpy2.robjects.lib.grid.Unit` and :class:`rpy2.robjects.lib.grid.Gpar` to model their counterparts in R's `grid` package as they were previously missing from rpy2. Release 2.3.2 ============= Bug fixed --------- - Building on Win64 (pull request #6) - Fetching data from an R package through `importr` was masking any R object called `data` in that package. The data are now under the attribute name `__rdata__`. This is not completely safe either, although much less likely, a warning will be issued if still masking anything. Changes ------- - More informative error message when failing to build because `R CMD config` does not return what is expected Release 2.3.1 ============= Bugs fixed ---------- - default console print callback with Python (issue #112 linked to it) - deprecation warnings with ggplot2 (issue #111 and contributed patch)
2015-04-03Recursive bump for vala-0.28.0 update.wiz1-1/+2
2015-03-31SSE2 support only makes sense on X86, but configure doesn't reallyjoerg1-1/+7
check. Use a blunt object to help it.
2015-03-31Support NetBSD platforms with non-fixed endianess. Remove patch backupsjoerg3-4/+25
just before install to make patch updates easier.
2015-03-17Package requires GCC runtime.jperkin1-1/+3
2015-03-15needs cursestnn1-1/+2
2015-03-15Set MAINTAINER to pkgsrc-users.hiramatsu2-4/+4
2015-03-15Set MAINTAINER to pkgsrc-users.hiramatsu1-2/+2
2015-03-15needs cursestnn1-1/+2
2015-03-14Update pear-Numbers_Words to 0.18.0.taca2-6/+6
0.18.0 Release date: 2014-10-24 17:28 UTC Release state: beta Changelog: * Fixed bug #19453: Incorrect spelling of Hungarian numbers [kouber] * Fixed bug #19543: Better handling of decimal mark and thousands separators [kouber] * Fixed bug #19855: Do not emit E_NOTICE when calling toWords() statically [cweiske] * Fixed pl unicode [Jakub Roszkiewicz] * Fixed ru_RU currency codes [Vital Leshchyk] * Fixed tr_TR unicode [Shahriyar Imanov] * Added en_IN - Indian English [Abhinav Nayak] * Added lv - Latvian [Andrius] * Added ro_RO - Romanian [Bogdan Stancescu] * Added ua - Ukrainian [Vital Leshchyk] * Unify locale loading code [cweiske] * Use PEAR class-to-filename convention [cweiske] This release changes class names and locations of locale files. This is a backwards compatibility break.
2015-03-13Update ruby-spreadsheet to 1.0.3.taca2-6/+6
### 1.0.3 / 10.03.2015 Author: Robert Eshleman <c.robert.eshleman@gmail.com> Date: Mon Mar 9 09:47:59 2015 -0400 * Update `ruby-ole` to `1.2.11.8` ** `ruby-ole` <= `1.2.11.7` throws a duplicated key warning in Ruby 2.2. ** This commit updates `ruby-ole` to `1.2.11.8`, which fixes this warning. ** Related discussion: [aquasync/ruby-ole#15] - [aquasync/ruby-ole#15]: https://github.com/aquasync/ruby-ole/issues/15 ### 1.0.2 / 05.03.2015 Author: cantin <cantin2010@gmail.com> Date: Thu Mar 5 16:13:59 2015 +0800 * add Rational support * add rational requirement * use old rational syntax in test
2015-03-12needs soelimtnn1-2/+2
2015-03-12fix parse error in fftw.texi when makeinfo is provided by gtexinfotnn2-4/+20
2015-03-08Update ruby-gsl to 1.16.0.4.taca11-556/+206
* Switch to rb-gsl gem. Fri Dec 19 2014 * Ruby/GSL 1.16.0.4 * Optimize and extract multiplication and division operations on Fixnum and Float. Pull request #8 by Veselin Vasilev. * Fixed division in GSL::Oper for GSL::Vector::Col. Issue #9. Tue Oct 21 2014 * Ruby/GSL 1.16.0.3 * Fixed RDoc issues. Issue #6 by @bigtunacan. * Fixed $LOAD_PATH problem. Pull request #7 by Takahiro SATOH. Wed Jul 9 2014 * Ruby/GSL 1.16.0.2 * Fixed linking problem. Thu Apr 24 2014 * Ruby/GSL 1.16.0.1 * Extensive cleanup. * Fixed linking problems. * Required Ruby version >= 1.8.7. Fri Jan 24 2014 * Ruby/GSL 1.16.0 * GSL-1.16 support.
2015-03-08Add ${GEM_EXTSDIR}/gem.build_complete for new rubygems and updated ruby.taca1-1/+2
2015-03-02LLVM's correlated value propagation pass is known to require a lot ofjoerg1-6/+3
memory and CPU time for certain input. Provide a variable (CLANG_NO_VALUE_PROPAGATION_PASS) for selectively disabling it in those places known to trigger it.
2015-02-28Always build PIC. Bump revision.joerg3-3/+31
2015-02-27Update to 2.07mef2-7/+6
-------------- 2.07 2014-01-26 Hugo - Go direct to XS for more speed - add lcm/blcm, bsqrt, bmodinv
2015-02-21Update to 1.0.3:wiz2-6/+6
Changes in version 1.0.3: - Fixed mpc_pow, see http://lists.gforge.inria.fr/pipermail/mpc-discuss/2014-October/001315.html - #18257: Switched to libtool 2.4.5.
2015-02-20Update to 1.06wen2-7/+6
Upstream changes: 1.06 2014-11-25 07:09:08-05:00 America/New_York [Fixed] - Make 0 and 0 compare equal with a relative epsilon [Documented] - Added SEE ALSO with Number::Tolerant and Test::Deep::NumberTolerant 1.05 2014-11-24 11:08:11-05:00 America/New_York [Fixed] - relative comparison of array reference elements now works as intended - diagnostics of delta_not_ok and delta_not_within clarified under relative comparison 1.04 2013-11-20 18:43:32 America/New_York - Modernized distribution metadata and licensing - Distribution now managed with Dist::Zilla
2015-02-17Restore variable substitution lost in last update, exposed by cwrappers.jperkin2-5/+5
2015-02-07Regenerate for updated `patch-include_cln_types.h'.jdc1-2/+2
2015-02-07Commit correct version of patch (oops).jdc1-13/+4
2015-02-07Regenerate for new `patch-include_cln_types.h'.jdc1-1/+2
2015-02-07Allow this to compile on sparc64 (sent upstream).jdc1-0/+40
2015-02-04Add coinmpryoon1-1/+2
2015-02-04Import coinmp-1.7.6 as math/coinmp.ryoon5-0/+375
CoinMP is a C-API library that supports most of the functionality of CLP (Coin LP), CBC (Coin Branch-and-Cut), and CGL (Cut Generation Library) projects.
2015-02-03(pkgsrc)mef3-8/+10
- Add LICENSE gnu-gpl-v2 (upstream) - Update 2.12 to 2.13 ############################################## # 2013-03-13 galculator 2.1.3 released # ############################################## 2014-03-07 Simon Floery <simon.floery@rechenraum.com> * Added Spanish tranlsation (thanks to jcsl, sf.net patch #8) 2014-02-19 Simon Floery <simon.floery@rechenraum.com> * Fixed segfault introduced in r134 2014-01-13 Simon Floery <simon.floery@rechenraum.com> * Updated Turkish translations (thanks to Volkan, fixes sf.net #103) 2014-01-08 Simon Floery <simon.floery@rechenraum.com> * Fixing result string corruption when toggling sign (thanks to Juha Kylliaein for reporting) * Emitting signal in apply_preferences so that menu gets hidden after a restart again (closes sf.net #99) 2013-09-01 Simon Floery <simon.floery@rechenraum.com> * added Hungarian translation (thanks to Zoltan) 2013-08-14 Simon Floery <simon.floery@rechenraum.com> * rpn_stack_list when pasting (fixes sf.net #98, thanks to Don Allen for reporting).
2015-02-03Update ruby-narray to 0.6.1.1.taca3-12/+11
2013-03-16 Masahiro TANAKA <masa16.tanaka@gmail.com> * narray.c (Init_narray): add map, map! Thanks to Michael Macias.
2015-01-27specifiy -undefined dynamic-lookup with PKGSRC_FORTRAN=gfortran on Darwindbj1-1/+4
2015-01-27use the Accelerate framework on Darwin instead of the obsolete vecLibdbj8-25/+124
2015-01-23Rename private strtoi function. Bump revision.joerg5-3/+72
2015-01-23Rename local strtoi function.joerg2-1/+24
2015-01-23Update ruby-spreadsheet to 1.0.1.obache2-6/+6
### 1.0.1 / 22.01.2015 * Fixing Excel::Worksheet#dimensions
2015-01-23Simplify MASTER_SITES subdirectory.obache1-2/+2
2015-01-23PLIST was not updated for 'Update 0.13 to 0.14', sorry. Thanks dbjmef1-2/+1
2015-01-20Revbump associated with update of lang/ocaml.jaapb1-2/+2
2015-01-18Update 0.13 to 0.14mef2-6/+6
version: 0.14 date: Sat Oct 25 16:08:47 CEST 2014 changes: - support IMath as an optional replacement for GMP - minor AST generator improvements
2015-01-16Fix typo, s/GEM_CLEANBUOLD_EXTENSIONS/GEM_CLEANBUILD_EXTENSIONS/.taca1-2/+2
2015-01-09Expect C89 userland.joerg2-1/+17
2015-01-08Update HOMEPAGE.wiz1-2/+2
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