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2013-09-20Remove curl dependency, put file on nbftp.wiz1-2/+1
2013-09-20Updated to latest release. From CHANGES.txt:rodent2-6/+7
2.7.3.32 - 2012-08-16 --------------------- - Fixed compatibility with Python 3.3 - Process boostrap: Now ignores errors while flushing stdout (Issue #16).
2013-09-02Revbump after cairo updateadam1-2/+2
2013-08-26Update to version 0.19.1cheusov2-6/+6
paexec: Fix for segfault seen on Linux
2013-08-25Update to 0.19.0cheusov4-42/+28
This release of paexec was successfully tested on the following platforms: NetBSD-6.1/amd64, OpenBSD-5.3/i386, FreeBSD-8.3/i386, Solaris-10/sparc, Solaris-11/amd64 and diverse Linux/{i386,amd64}. paexec is now selfcontained, libmaa is not needed anymore. Presentation paexec.pdf was added to presentation/. I hope it will help easier understand how "paexec" works. It is installed to ${DOCDIR}. paexec: - POSIX-2008 getline(3) is used for reading lines instead of home-made function. - t '' is equivalent to "no transport", spaces are trimmed. - "-n +NNN" has higher priority than -t, i.e. if they both are specified, transport is ignored. - Fix for -W1. - Environment variable PAEXEC_EOT was introduced. - Option -y was added to paexec(1) and paexec_reorder(1). - Option -C was added to paexec(1). paexec_reorder: - Option -x was added to paexec_reorder(1). A number of fixes and improvements in regression tests.
2013-07-28Update to 2.7.3.31:wiz2-7/+6
2.7.3.31 - 2012-07-04 --------------------- - Recent changes broke support for running without C extension (Issue #57).
2013-07-19Add f90 option for fortran90 bindingsmanu3-4/+25
2013-07-16Update to hwloc-1.7.1manu2-8/+8
Changes since 1.7 from NEWS file: Version 1.7.1 ------------- * Fix a failed assertion in the distance grouping code when loading a XML file that already contains some groups. Thanks to Laercio Lima Pilla for reporting the problem. * Remove unexpected Group objects when loading XML topologies with I/O objects and NUMA distances. Thanks to Elena Elkina for reporting the problem and testing patches. * Fix PCI link speed discovery when using libpciaccess. * Fix invalid libpciaccess virtual function device/vendor IDs when using SR-IOV PCI devices on Linux. * Fix GL component build with old NVCtrl releases. Thanks to Jirka Hladky for reporting the problem. * Fix embedding breakage caused by libltdl. Thanks to Pavan Balaji for reporting the problem. * Always use the system-wide libltdl instead of shipping one inside hwloc. * Document issues when enabling plugins while embedding hwloc in another project, in the documentation section Embedding hwloc in Other Software. * Add a FAQ entry "How to get useful topology information on NetBSD?" in the documentation. * Somes fixes in the renaming code for embedding. * Miscellaneous minor build fixes.
2013-07-12Bump PKGREVISION of all packages which create users, to pick up change ofjperkin3-6/+6
sysutils/user_* packages.
2013-07-02+py-billiardrodent1-1/+2
2013-07-02Import py27-billiard-2.7.3.30 as parallel/py-billiard.rodent4-0/+128
billiard is a fork of the Python 2.7 multiprocessing package. The multiprocessing package itself is a renamed and updated version of R Oudkerk's pyprocessing package. This standalone variant is intended to be compatible with Python 2.4 and 2.5, and will draw it's fixes/improvements from python-trunk. * Also it is a fork of the multiprocessin backport package by Christian Heims; * It includes the no-execv patch contributed by R. Oudkerk; * And the Pool improvements previously located in Celery;
2013-06-16This package doesn't contain Fortran code and doesn't use Fortran libraries.asau1-2/+2
2013-06-16Fix build with perl-5.18.wiz2-1/+54
2013-06-06Bump PKGREVISION for libXft changes for NetBSD native X support onwiz1-2/+2
NetBSD 6, requested by tron.
2013-06-04Try to fix the fallout caused by the fix for PR pkg/47882. Part 3:tron2-4/+4
Recursively bump package revisions again after the "freetype2" and "fontconfig" handling was fixed.
2013-06-03Bump freetype2 and fontconfig dependencies to current pkgsrc versions,wiz2-3/+4
to address issues with NetBSD-6(and earlier)'s fontconfig not being new enough for pango. While doing that, also bump freetype2 dependency to current pkgsrc version. Suggested by tron in PR 47882
2013-05-31Bump all packages for perl-5.18, thatwiz7-11/+14
a) refer 'perl' in their Makefile, or b) have a directory name of p5-*, or c) have any dependency on any p5-* package Like last time, where this caused no complaints.
2013-05-23Add missing include for NetBSD/current.joerg2-2/+18
2013-05-10Added PLIST.Darwinadam1-0/+2
2013-05-10Changes 3.0.4:adam5-47/+59
This release adds several performance features for the Hydra process manager, support for communicator-specific tuning of eager/rendezvous thresholds, and fixes several bugs present in 3.0.3. Please use this release instead of 3.0.3.
2013-04-30Make MPI compiler wrapper usable outside pkgsrc.asau1-1/+5
2013-04-30Define MPI_PREFIX to help installing other MPI-aware programs into separate ↵asau1-1/+2
places.
2013-04-20Make it use weak symbols with Clang.asau2-1/+18
2013-04-17Fix packaging for the most useful case.asau1-2/+1
Clang folks should figure out what is wrong with weak symbols in their compiler.
2013-04-15Changes 3.0.3:adam6-42/+79
A new stable release of MPICH, 3.0.3, is now available for download. This release adds several performance features for MPI-RMA and fixes several bugs present in 3.0.2. Please use this release instead of 3.0.2.
2013-04-15Version 1.7.0adam9-267/+51
------------- * New operating system backends + Add BlueGene/Q compute node kernel (CNK) support. See the FAQ in the documentation for details. Thanks to Jeff Hammond, Christopher Samuel and Erik Schnetter for their help. + Add NetBSD support, thanks to Aleksej Saushev. * New I/O device discovery + Add co-processor OS devices such as "mic0" for Intel Xeon Phi (MIC) on Linux. Thanks to Jerome Vienne for helping. + Add co-processor OS devices such as "cuda0" for NVIDIA CUDA-capable GPUs. + Add co-processor OS devices such as "opencl0d0" for OpenCL GPU devices on the AMD OpenCL implementation. + Add GPU OS devices such as ":0.0" for NVIDIA X11 displays. + Add GPU OS devices such as "nvml0" for NVIDIA GPUs. Thanks to Marwan Abdellah and Stefan Eilemann for helping. These new OS devices have some string info attributes such as CoProcType, GPUModel, etc. to better identify them. See the I/O Devices and Attributes documentation sections for details. * New components + Add the "opencl", "cuda", "nvml" and "gl" components for I/O device discovery. + "nvml" also improves the discovery of NVIDIA GPU PCIe link speed. All of these new components may be built as plugins. They may also be disabled entirely by passing --disable-opencl/cuda/nvml/gl to configure. See the I/O Devices, Components and Plugins, and FAQ documentation sections for details. * API + Add hwloc_topology_get_flags(). + Add hwloc/plugins.h for building external plugins. See the Adding new discovery components and plugins section. * Interoperability + Add hwloc/opencl.h, hwloc/nvml.h, hwloc/gl.h and hwloc/intel-mic.h to retrieve the locality of OS devices that correspond to AMD OpenCL GPU devices or indexes, to NVML devices or indexes, to NVIDIA X11 displays, or to Intel Xeon Phi (MIC) device indexes. + Add new helpers in hwloc/cuda.h and hwloc/cudart.h to convert between CUDA devices or indexes and hwloc OS devices. + Add hwloc_ibv_get_device_osdev() and clarify the requirements of the OpenFabrics Verbs helpers in hwloc/openfabrics-verbs.h. * Tools + hwloc-info is not only a synonym of lstopo -s anymore, it also dumps information about objects given on the command-line. * Documentation + Add a section "Existing components and plugins". + Add a list of common OS devices in section "Software devices". + Add a new FAQ entry "Why is lstopo slow?" about lstopo slowness issues because of GPUs. + Clarify the documentation of inline helpers in hwloc/myriexpress.h and hwloc/openfabrics-verbs.h. * Misc + Improve cache detection on AIX. + The HWLOC_COMPONENTS variable now excludes the components whose names are prefixed with '-'. + lstopo --ignore PU now works when displaying the topology in graphical and textual mode (not when exporting to XML). + The `libpci' component is now called `pci' but the old name is still accepted in the HWLOC_COMPONENTS variable for backward compatibility.
2013-04-11Re-sync with reality -- Not only is there no settings.{,c}sh tohauke1-14/+1
source, there is not even a {PREFIX}/sge/default directory.
2013-04-08Revert pkglint-induced nonsense.asau1-7/+11
2013-04-08Remove "Trailing empty lines." and/or "Trailing white-space."rodent1-2/+2
2013-04-07Edited DESCR in the case of:rodent1-11/+7
File too long (should be no more than 24 lines). Line too long (should be no more than 80 characters). Trailing empty lines. Trailing white-space. Trucated the long files as best as possible while preserving the most info contained in them.
2013-04-06Various MASTER_SITES-related fixes.rodent1-12/+12
2013-04-06'"@comment $NetBSD$" expected.'rodent1-0/+1
2013-03-28Fix return types.joerg10-1/+240
2013-03-20Register Solaris-specific file. Caught by bulk build at Joyent.asau1-0/+2
2013-03-19Add PLIST.Linux.sbd2-2/+8
Bump PKGREVISION
2013-03-17Update to MPICH 3.0.1asau12-715/+216
=============================================================================== Changes in 3.0 =============================================================================== # MPI-3: All MPI-3 features are now implemented and the MPI_VERSION bumped up to 3.0. # OVERALL: Added support for ARM-v7 native atomics # MPE: MPE is now separated out of MPICH and can be downloaded/used as a separate package. # PM/PMI: Upgraded to hwloc-1.6 # Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r10344:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich-3.0 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich-3.0?action=follow_copy&rev=HEAD&stop_rev=10344&mode=follow_copy =============================================================================== Changes in 1.5 =============================================================================== # OVERALL: Nemesis now supports an "--enable-yield=..." configure option for better performance/behavior when oversubscribing processes to cores. Some form of this option is enabled by default on Linux, Darwin, and systems that support sched_yield(). # OVERALL: Added support for Intel Many Integrated Core (MIC) architecture: shared memory, TCP/IP, and SCIF based communication. # OVERALL: Added support for IBM BG/Q architecture. Thanks to IBM for the contribution. # MPI-3: const support has been added to mpi.h, although it is disabled by default. It can be enabled on a per-translation unit basis with "#define MPICH2_CONST const". # MPI-3: Added support for MPIX_Type_create_hindexed_block. # MPI-3: The new MPI-3 nonblocking collective functions are now available as "MPIX_" functions (e.g., "MPIX_Ibcast"). # MPI-3: The new MPI-3 neighborhood collective routines are now available as "MPIX_" functions (e.g., "MPIX_Neighbor_allgather"). # MPI-3: The new MPI-3 MPI_Comm_split_type function is now available as an "MPIX_" function. # MPI-3: The new MPI-3 tools interface is now available as "MPIX_T_" functions. This is a beta implementation right now with several limitations, including no support for multithreading. Several performance variables related to CH3's message matching are exposed through this interface. # MPI-3: The new MPI-3 matched probe functionality is supported via the new routines MPIX_Mprobe, MPIX_Improbe, MPIX_Mrecv, and MPIX_Imrecv. # MPI-3: The new MPI-3 nonblocking communicator duplication routine, MPIX_Comm_idup, is now supported. It will only work for single-threaded programs at this time. # MPI-3: MPIX_Comm_reenable_anysource support # MPI-3: Native MPIX_Comm_create_group support (updated version of the prior MPIX_Group_comm_create routine). # MPI-3: MPI_Intercomm_create's internal communication no longer interferes with point-to-point communication, even if point-to-point operations on the parent communicator use the same tag or MPI_ANY_TAG. # MPI-3: Eliminated the possibility of interference between MPI_Intercomm_create and point-to-point messaging operations. # Build system: Completely revamped build system to rely fully on autotools. Parallel builds ("make -j8" and similar) are now supported. # Build system: rename "./maint/updatefiles" --> "./autogen.sh" and "configure.in" --> "configure.ac" # JUMPSHOT: Improvements to Jumpshot to handle thousands of timelines, including performance improvements to slog2 in such cases. # JUMPSHOT: Added navigation support to locate chosen drawable's ends when viewport has been scrolled far from the drawable. # PM/PMI: Added support for memory binding policies. # PM/PMI: Various improvements to the process binding support in Hydra. Several new pre-defined binding options are provided. # PM/PMI: Upgraded to hwloc-1.5 # PM/PMI: Several improvements to PBS support to natively use the PBS launcher. # Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r8478:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.5 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.5?action=follow_copy&rev=HEAD&stop_rev=8478&mode=follow_copy
2013-03-17Update to OpenPA 1.0.4asau5-11/+36
Inter-process locking may be broken on NetBSD under some conditions. (This didn't get worse since previous package.) Field tests (benchmarks/skampi) don't reveal that the relevant code path is invoked. Major Changes in OpenPA v1.0.4 * native ARM (v7 and higher) support * numerous memory barrier placement improvements in queue and test code * x86 memory barrier improvements, including for Intel MIC * numerous build system improvements Major Changes in OpenPA v1.0.3 * Libtool shared library support for OPA, avoiding shared/static mixed linking problems on some platforms. * The build system should now work more portably with broken/exotic shells. * pkg-config support * Emulated atomics can now be detected by the presence of an OPA_EXPLICIT_EMULATION #define in opa_config.h. * PPC types are now correctly aligned to 8 bytes instead of 16 bytes. * many more tests for "make check", fixed missing memory barriers in one test
2013-03-08"paexec -t ''" is equivalent to "paexec" with no transport; ++pkgrevisioncheusov3-2/+19
2013-03-07Version 0.18.0, by Aleksey Cheusov, Thu, 7 Mar 2013 15:17:33 +0300cheusov2-6/+6
paexec: - fixed: NULL dereference when the first line given on input is empty. Thanks to Sergey Revyako for bug report! - fixed: entire command passed tp ssh-like transport should be shquoted. In particular this fixes -x that didn't work with -t. Thanks to Sergey Revyako for bug report! - 'paexec -g' accepts empty strings as tasks. - More regression tests were added paexec_reorder.1: - Mistype fix
2013-03-03Update to 20130122. Changes:shattered2-6/+6
* --sshdelay Delay starting next ssh by secs seconds. * Bug fixes and man page updates.
2013-02-28Drop manual conflict registration, it conflicts with what we intend to do.asau2-8/+2
2013-02-26On NetBSD, link against libexecinfo when backtrace(3) is desired.joerg4-2/+36
2013-02-26NetBSD/current needs _KMEMUSER and a few additional includes.joerg2-7/+23
2013-02-24Update to OpenMPI 1.6.4asau3-7/+8
Here is a list of changes in v1.6.4 as compared to v1.6.3: - Fix Cygwin shared memory and debugger plugin support. Thanks to Marco Atzeri for reporting the issue and providing initial patches. - Fix to obtaining the correct available nodes when a rankfile is providing the allocation. Thanks to Siegmar Gross for reporting the problem. - Fix process binding issue on Solaris. Thanks to Siegmar Gross for reporting the problem. - Updates for MXM 2.0. - Major VT update to 5.14.2.3. - Fixed F77 constants for Cygwin/Cmake build. - Fix a linker error when configuring --without-hwloc. - Automatically provide compiler flags that compile properly on some types of ARM systems. - Fix slot_list behavior when multiple sockets are specified. Thanks to Siegmar Gross for reporting the problem. - Fixed memory leak in one-sided operations. Thanks to Victor Vysotskiy for letting us know about this one. - Added performance improvements to the OpenIB (OpenFabrics) BTL. - Improved error message when process affinity fails. - Fixed MPI_MINLOC on man pages for MPI_REDUCE(_LOCAL). Thanks to Jed Brown for noticing the problem and supplying a fix. - Made malloc hooks more friendly to IO interprosers. Thanks to the bug report and suggested fix from Darshan maintainer Phil Carns. - Restored ability to direct launch under SLURM without PMI support. - Fixed MPI datatype issues on OpenBSD. - Major VT update to 5.14.2.3. - Support FCA v3.0+. - Fixed header file problems on OpenBSD. - Fixed issue with MPI_TYPE_CREATE_F90_REAL. - Fix an issue with using external libltdl installations. Thanks to opolawski for identifying the problem. - Fixed MPI_IN_PLACE case for MPI_ALLGATHER for FCA. - Allow SLURM PMI support to look in lib64 directories. Thanks to Guillaume Papaure for the patch. - Restore "use mpi" ABI compatibility with the rest of the 1.5/1.6 series (except for v1.6.3, where it was accidentally broken). - Fix a very old error in opal_path_access(). Thanks to Marco Atzeri for chasing it down.
2013-02-16Recursive bump for png-1.6.wiz2-3/+4
2013-02-06PKGREVISION bumps for the security/openssl 1.0.1d update.jperkin3-6/+6
2013-01-08Remove MANDIR= from MAKE_ENV which is already there (mk-c.mk)cheusov1-2/+1
2012-12-15Restructure in preparation for adding a java option.markd1-5/+9
2012-12-15Support 64bit linux.markd1-1/+6
2012-12-15parallel/openmpi: Add supplemental PLIST for DragonFlymarino1-0/+3
DragonFly produces an shmem library in additional to the standard PLIST.
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