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2012-06-14SET_LIBDIR=yessbd1-1/+2
2012-06-14Recursive PKGREVISION bump for libxml2 buildlink addition.sbd2-3/+4
2012-06-13Distfile has moved to archive subdirectory.asau1-2/+3
2012-06-12Update to OpenMPI 1.6asau7-33/+89
Disable automatic detection of SGE and SLURM to avoid PLIST divergence. Changes in OpenMPI 1.6 v1.6 is a major release; it effectively deprecates both the v1.4.x and v1.5.x series, and replaces v1.4.x as the current "super stable" series. A forthcoming v1.7 series will become the new "feature" series. *All users* -- including production users and downstream providers -- are encouraged to upgrade to v1.6. Note that v1.6 is ABI compatible with the entire v1.5.x series, but is not ABI compatible with the v1.4.x series. See http://www.open-mpi.org/software/ompi/versions/ for a description of Open MPI's release methodology. Here is a list of changes in v1.6 as compared to v1.5.5: - Fix some process affinity issues. When binding a process, Open MPI will now bind to all available hyperthreads in a core (or socket, depending on the binding options specified). --> Note that "mpirun --bind-to-socket ..." does not work on POWER6- and POWER7-based systems with some Linux kernel versions. See the FAQ on the Open MPI web site for more information. - Add support for ARM5 and ARM6 (in addition to the existing ARM7 support). Thanks to Evan Clinton for the patch. - Minor Mellanox MXM fixes. - Properly detect FDR10, FDR, and EDR OpenFabrics devices. - Minor fixes to the mpirun(1) and MPI_Comm_create(3) man pages. - Prevent segv if COMM_SPAWN_MULTIPLE fails. Thanks to Fujitsu for the patch. - Disable interposed memory management in fakeroot environments. This fixes a problem in some build environments. - Minor hwloc updates. - Array versions of MPI_TEST and MPI_WAIT with a count==0 will now return immediately with MPI_SUCCESS. Thanks to Jeremiah Willcock for the suggestion. - Update VampirTrace to v5.12.2. - Properly handle forwarding stdin to all processes when "mpirun --stdin all" is used. - Workaround XLC assembly bug. - OS X Tiger (10.3) has not been supported for a while, so forcibly abort configure if we detect it. - Fix segv in the openib BTL when running on SPARC 64 systems. - Fix some include file ordering issues on some BSD-based platforms. Thanks to Paul Hargove for this (and many, many other) fixes. - Properly handle .FALSE. return parameter value to attribute copy callback functions. - Fix a bunch of minor C++ API issues; thanks to Fujitsu for the patch. - Fixed the default hostfile MCA parameter behavior. - Per the MPI spec, ensure not to touch the port_name parameter to MPI_CLOSE_PORT (it's an IN parameter).
2012-06-02Set USE_TOOLS instead of BUILD_DEPENDS to get csh, and use ${CSH}dholland1-5/+3
instead of "tcsh". This builds ok for me on NetBSD; if it turns out to cause trouble for anyone, revert it. The motivation was that the BUILD_DEPENDS accepted either tcsh or standalone-tcsh, and distbb was latching onto the latter and then failing trying to install it. If the package turns out to really need tcsh in some contexts, there are probably other ways to deal with this issue.
2012-05-28Update to OpenMPI 1.5.5asau5-23/+53
Changes in 1.5.5 ---------------- - Many, many portability configure/build fixes courtesy of Paul Hargrove. Thanks, Paul! - Fixed shared memory fault tolerance support compiler errors. - Removed not-production-quality rshd and tmd PLM launchers. - Minor updates to the Open MPI SRPM spec file. - Fixed mpirun's --bind-to-socket option. - A few MPI_THREAD_MULTIPLE fixes in the shared memory BTL. - Upgrade the GNU Autotools used to bootstrap the 1.5/1.6 series to all the latest versions at the time of this release. - Categorically state in the README that if you're having a problem with Open MPI with the Linux Intel 12.1 compilers, *upgrade your Intel Compiler Suite to the latest patch version*, and the problems will go away. :-) - Fix the --without-memory-manager configure option. - Fixes for Totalview/DDT MPI-capable debuggers. - Update rsh/ssh support to properly handle the Mac OS X library path (i.e., DYLD_LIBRARY_PATH). - Make warning about shared memory backing files on a networked file system be optional (i.e., can be disabled via MCA parameter). - Several fixes to processor and memory affinity. - Various shared memory infrastructure improvements. - Various checkpoint/restart fixes. - Fix MPI_IN_PLACE (and other MPI sentinel values) on OS X. Thanks to Dave Goodell for providing the magic OS X gcc linker flags necessary. - Various man page corrections and typo fixes. Thanks to Fujitsu for the patch. - Updated wrapper compiler man pages to list the various --showme options that are available. - Add PMI direct-launch support (e.g., "srun mpi_application" under SLURM). - Correctly compute the aligned address when packing the datatype description. Thanks to Fujitsu for the patch. - Fix MPI obscure corner case handling in packing MPI datatypes. Thanks to Fujitsu for providing the patch. - Workaround an Intel compiler v12.1.0 2011.6.233 vector optimization bug. - Output the MPI API in ompi_info output. - Major VT update to 5.12.1.4. - Rankfile 'P'hysical mapping is no longer available. - Upgrade embedded Hardware Locality (hwloc) v1.3.2, plus some post-1.3.2-release bug fixes. All processor and memory binding is now done through hwloc. Woo hoo! Note that this fixes core binding on AMD Opteron 6200 and 4200 series-based systems (sometimes known as Interlagos, Valencia, or other Bulldozer-based chips). - New MCA parameters to control process-wide memory binding policy: hwloc_base_mem_alloc_policy, hwloc_base_mem_bind_failure_action (see ompi_info --param hwloc base). - Removed direct support for libnuma. Libnuma support may now be picked up through hwloc. - Added MPI_IN_PLACE support to MPI_EXSCAN. - Various fixes for building on Windows, including MinGW support. - Removed support for the OpenFabrics IBCM connection manager. - Updated Chelsio T4 and Intel NE OpenFabrics default buffer settings. - Increased the default RDMA CM timeout to 30 seconds. - Issue a warning if both btl_tcp_if_include and btl_tcp_if_exclude are specified. - Many fixes to the Mellanox MXM transport.
2012-05-21parallel/openmpi: Fix PLIST for DragonFlymarino2-2/+10
2012-05-10pkglint cleanup while here.wiz1-4/+4
2012-05-10Fix build with automake-1.12.wiz2-1/+16
2012-04-18Fixup DESTDIR handling in do-install.markd1-5/+6
Add LICENSE (sun-iss + 2-clause-bsd + gpl + lgpl)
2012-04-15Add missing pam.bl3.mk. (but, it builds on LP64 platforms now. yay!)dholland1-1/+2
2012-04-15Reinstate patch-source-utilbin_Makefile (aka patch-ak)markd6-30/+168
Dont install *.orig files Fix build on 64bit systems Fix arch name for Linux Bump PKGREVISION
2012-04-07Mark sge and gridscheduler not for ${LP64PLATFORMS}. They crash duringdholland2-2/+8
build.
2012-03-21+ gridschedulerasau1-1/+3
+ hwloc
2012-03-21Remove empty patches, no idea how they have got through.asau11-11/+1
2012-03-21Import Open Grid Scheduler version 2011.11 as parallel/gridscheduler.asau24-0/+1287
Heavily based on Sun Grid Engine package (parallel/sge). Open Grid Scheduler/Grid Engine is a free and open-source batch-queuing system for distributed resource management. OGS/GE is based on Sun Grid Engine, and maintained by the same group of external (i.e. non-Sun) developers who started contributing code to Sun Grid Engine since 2001.
2012-03-21Import Portable Hardware Locality (hwloc) version 1.4 as parallel/hwloc.asau10-0/+648
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
2012-03-20Update to the Son of Grid Engine 8.0.0dasau20-374/+289
The Son of Grid Engine is a community project to continue Sun Grid Engine. Notable changes in Son of Grid Engine ------------------------------------- Version 8.0.0d -------------- * Bug fixes * Man and fixes * Fix building with older gcc versions * Provide load average in qstat XML output [#446, #454] * Partially back out Univa change which broke classic spooling * Fix -terse in sge_request [#777] * Other changes (possibly-incompatible) * Message fixes Version 8.0.0c -------------- * Bug fixes * Man and other documentation fixes * Build/installation fixes (particularly for Red Hat 6 and Linux 3) * Fix group ids for submitted jobs [U] * Fix default value of boolean with JSV [U] * Windows fixes for helper crashes and Vista GUI jobs [U] * Ensure parallel jobs are dispatched to the least loaded host [U] * Correct ownership of qsub -pty output file; was owned by admin user [U] * Fix format of Windows loadcheck.exe output [U] * Read from stderr even if stdout is already closed in IJS [U] * Fix PDC_INTERVAL=NEVER execd parameter [U] * Fix accounting information for Windows GUI jobs [U] * Increase default MAX_DYN_EC qmaster param [U] * Fix qsub -sync y error message and enforce MAX_DYN_EC correctly [U] * Fix job validation (-w e) behaviour [#716] [U] * Fix qrsh input redirection [U] * Avoid warning when submitting a qrsh job [U] * Print start time in qstat -j -xml output [U] * Don't raise an error changing resource request on waiting job [#806] * Don't exit 0 on error with qconf -secl or -sep * Include string.h in drmaa.h [#712] * Fix process-scheduler-log with host aliases * Enhancements * Base qmake and qtcsh on the current gmake and tcsh source [#289, #504, #832] * Support "-binding linear" and "-binding linear:slots" * Use the hwloc library for all topology information and core binding, supporting more operating systems (now: AIX, Darwin, FreeBSD, GNU/Linux, HPUX, MS Windows, OSF/1, Solaris), and more hardware types (specifically AMD Magny Cours and similar) * Add task number to execd "exceeds job ... limit" * Other changes (possibly-incompatible) * Modify default paths in build files and elsewhere [U] * Assorted message fixes * In RPMs, move qsched to qmaster package, and separate drmaa4ruby * Default to newijs in load_sge_config.sh * Default to sh, not csh for configured shell Version 8.0.0b -------------- * Bug fixes * Build/installation fixes [including #424, #1349] [(U)] * Fix execd init script [#1348] * Man and other documentation fixes [including #614, #764] [(U)] * Fix contents of admin mail properly [#1307, #1345] * Fix qalter messages for -tc * Fix build with -DSGE_PQS_API * Fix group ids for submitted jobs [U] * Enhancements * Update qsched and add man page * Other changes (possibly-incompatible) * Avoid the use of /bin/ksh [#1306] * Change installation defaults to classic spooling, not adding shadow hosts, and not JMX. [(U)] Version 8.0.0a -------------- This is roughly a superset of Univa's 8.0.0 (the V800_TAG from https://github.com/gridengine/gridengine), with thanks for that. Changes made there which haven't been included in this version: PLPA source not removed; some different build/installation defaults (e.g. for JMX); Univa/UGE "branding" (partly because trademark status is unknown); authuser not removed (for SDM and testing use), * Bug fixes * Many man and other documentation fixes [including #790, #776, #769, #733, #610, #587, #581, #459, #456, #439, #255, #1288, #797, #1271, #773] [(U)] * Some program message fixes [(U)] * Various build and installation fixes [including #761, #709, #656, #616, #546, #536, #521, #491, #438, #414, #411, #383, #381, #138, #455, #344, #438, #1311, #1272, #1273] [(U)] * Ask for keystore password twice on installation * Fix qmaster crashes with tightly integrated parallel jobs or un-discoverable qinstance [#789] [U] * Report 0 cores and sockets on unsupported Solaris hosts [U] * Fix malloc hooks which caused crashes, particularly with SuSE 11 [#792, #748, #749] [U] * Verify the pe task start user in execd in non-CSP mode [U] * Fix binding parameters parsing [U] * Fix JSV logging with multiple users submitting jobs on same submit host [U] * Fix unresponsive qmaster when modifying the global configuration in a huge cluster [U] * Speed up finishing tightly integrated jobs [U] * Check consistency of JSV binding information properly [U] * Fix broken project spooling, which caused loss of project when restarting master when using core binding [U] * Fix slotwise preemption failure to unsuspend one job per host [#775] [U] * Fix problems retrieving passwd and group information with large responses [#1295] [(U)] * Fix JSV changing default of boolean [U] * Fix ENABLE_RESCHEDULE_SLAVE=1 [U] * Allow comma in CMDNAME with Perl JSV scripts [#803] * Don't put queue into error state when supplementary group id cannot be set [#185] [U] * Don't convert LF to CRLF with qrsh -pty [U] * Fix qconf segfault on bad subordination string [U] * Fix group ids of submitted jobs [U] * Disallow -masterq with serial jobs [#155] [U] * Fix 100% CPU use by shepherd of qsh [U] * Removed unnecessary binding warning on job starts [U] * Fix qconf error reports when tmp directory has 755 permissions [U] * Fix suspending of remote process on qrsh -pty yes <cmd> on Solaris [U] * Fix starting jobs after global host changed [U] * Reject invalid load_formula value [U] * Fix handling of implicitly-requested exclusive resources [U] * Fix execd vmem reporting on 64-bit Linux [U] * Fix startup of execd on Windows Vista [U] * Set xterm's path more appropriately on GNU/Linux [#557] * Fix generation of admin email from failed jobs [#1307] * Fix some ill-formed output from qstat -xml [#314] * Fix handling of multi-line environment variables propagated to shepherd [#395] * Fix example MPI PE templates * Fix bad quoting in JSV sh library * Fix checking of consumables for parallel jobs across multiple hosts [U] * Enhancements * Additional and clarified documentation * PAM modules for ssh tight integration and access control for interactive jobs * Initial core binding support for Solaris/SPARC64 [U] * Some efficiency improvements and memory leaks fixed [U] * Ports to S/390 and PARISC GNU/Linux [U] * New complex m_thread [U] * Show topology by default in qhost [U] * qsub -pty switch [#704] [U] * Improved qmon graphics [#530] [(U)] * Include bash in default shell list [U] * A JSV that rejects all jobs [U] * Files for Scali-MPI * Ruby DRMAA implementation * Enable easy building against shared system libraries and use system openssl and bdb binaries * New scripts: "qsched" reports resource reservations; "status" wraps qstat; enable/disable submission; node-selection (idle etc.) * Restart argument for daemon init scripts * Improved efficiency of shell JSV if used with bash * Core dumps from crashing daemons enabled under Linux [U] * Example host_aliases file [#154] * Spec file for RPM packaging [#820] * Other changes (possibly-incompatible) * Show core binding by default in qstat, qhost (use -ncb for compatibility) [U] * Removed Berkeley DB RPC support (recently dropped by BDB) [U] * Changed position in pending job list for user-rescheduled jobs (exit99, qmod -rj) and OLD_RESCHEDULE_BEHAVIOR, OLD_RESCHEDULE_BEHAVIOR_ARRAY_JOB parameters [U] * Unified GNU/Linux arch strings (lx-*, from lx24-* and lx26-*) [U] * Default to enabling core binding on GNU/Linux [U] * Removed Sun service tags support [U] * Removed obsolete SunHPCT5 files
2012-03-20+ slurmasau1-1/+2
2012-03-20Import SLURM 2.4.0pre4 as parallel/slurmasau12-0/+517
SLURM is an open-source resource manager designed for Linux clusters of all sizes. It provides three key functions. First it allocates exclusive and/or non-exclusive access to resources (computer nodes) to users for some duration of time so they can perform work. Second, it provides a framework for starting, executing, and monitoring work (typically a parallel job) on a set of allocated nodes. Finally, it arbitrates contention for resources by managing a queue of pending work.
2012-03-13Add c99 support, fixes build on SunOS.fhajny3-4/+36
Change long xdr macros to int32 ones, fixes build on SunOS and ABI=64. Bump PKGREVISION.
2012-03-09clean-ups (adapted for recent mk-configure)cheusov1-4/+2
2012-03-03Recursive bump for pcre-8.30* (shlib major change)wiz2-4/+4
2012-02-06Revbump forwiz2-4/+4
a) tiff update to 4.0 (shlib major change) b) glib2 update 2.30.2 (adds libffi dependency to buildlink3.mk) Enjoy.
2012-02-06Switch to using REPLACE_CSH.sbd1-5/+2
2012-02-03Two of the install scripts use csh so add csh:run as a tools and usesbd1-2/+7
REPLACE_INTERPRETER on the scripts.
2012-02-03Set _PVM_ARCH=64 on x86_64-linux.sbd1-1/+3
2012-01-11Update to MPICH2 1.4.1p1asau6-25/+66
=============================================================================== Changes in 1.4.1 =============================================================================== # OVERALL: Several improvements to the ARMCI API implementation within MPICH2. # Build system: Added beta support for DESTDIR while installing MPICH2. # PM/PMI: Upgrade hwloc to 1.2.1rc2. # PM/PMI: Initial support for the PBS launcher. # Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r8675:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.4.1 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.4.1?action=follow_copy&rev=HEAD&stop_rev=8675&mode=follow_copy =============================================================================== Changes in 1.4 =============================================================================== # OVERALL: Improvements to fault tolerance for collective operations. Thanks to Rui Wang @ ICT for reporting several of these issues. # OVERALL: Improvements to the universe size detection. Thanks to Yauheni Zelenko for reporting this issue. # OVERALL: Bug fixes for Fortran attributes on some systems. Thanks to Nicolai Stange for reporting this issue. # OVERALL: Added new ARMCI API implementation (experimental). # OVERALL: Added new MPIX_Group_comm_create function to allow non-collective creation of sub-communicators. # FORTRAN: Bug fixes in the MPI_DIST_GRAPH_ Fortran bindings. # PM/PMI: Support for a manual "none" launcher in Hydra to allow for higher-level tools to be built on top of Hydra. Thanks to Justin Wozniak for reporting this issue, for providing several patches for the fix, and testing it. # PM/PMI: Bug fixes in Hydra to handle non-uniform layouts of hosts better. Thanks to the MVAPICH group at OSU for reporting this issue and testing it. # PM/PMI: Bug fixes in Hydra to handle cases where only a subset of the available launchers or resource managers are compiled in. Thanks to Satish Balay @ Argonne for reporting this issue. # PM/PMI: Support for a different username to be provided for each host; this only works for launchers that support this (such as SSH). # PM/PMI: Bug fixes for using Hydra on AIX machines. Thanks to Kitrick Sheets @ NCSA for reporting this issue and providing the first draft of the patch. # PM/PMI: Bug fixes in memory allocation/management for environment variables that was showing up on older platforms. Thanks to Steven Sutphen for reporting the issue and providing detailed analysis to track down the bug. # PM/PMI: Added support for providing a configuration file to pick the default options for Hydra. Thanks to Saurabh T. for reporting the issues with the current implementation and working with us to improve this option. # PM/PMI: Improvements to the error code returned by Hydra. # PM/PMI: Bug fixes for handling "=" in environment variable values in hydra. # PM/PMI: Upgrade the hwloc version to 1.2. # COLLECTIVES: Performance and memory usage improvements for MPI_Bcast in certain cases. # VALGRIND: Fix incorrect Valgrind client request usage when MPICH2 is built for memory debugging. # BUILD SYSTEM: "--enable-fast" and "--disable-error-checking" are once again valid simultaneous options to configure. # TEST SUITE: Several new tests for MPI RMA operations. # Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r7838:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.4 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.4?action=follow_copy&rev=HEAD&stop_rev=7838&mode=follow_copy =============================================================================== Changes in 1.3.2 =============================================================================== # OVERALL: MPICH2 now recognizes the OSX mach_absolute_time as a native timer type. # OVERALL: Performance improvements to MPI_Comm_split on large systems. # OVERALL: Several improvements to error returns capabilities in the presence of faults. # PM/PMI: Several fixes and improvements to Hydra's process binding capability. # PM/PMI: Upgrade the hwloc version to 1.1.1. # PM/PMI: Allow users to sort node lists allocated by resource managers in Hydra. # PM/PMI: Improvements to signal handling. Now Hydra respects Ctrl-Z signals and passes on the signal to the application. # PM/PMI: Improvements to STDOUT/STDERR handling including improved support for rank prepending on output. Improvements to STDIN handling for applications being run in the background. # PM/PMI: Split the bootstrap servers into "launchers" and "resource managers", allowing the user to pick a different resource manager from the launcher. For example, the user can now pick the "SLURM" resource manager and "SSH" as the launcher. # PM/PMI: The MPD process manager is deprecated. # PM/PMI: The PLPA process binding library support is deprecated. # WINDOWS: Adding support for gfortran and 64-bit gcc libs. # Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r7457:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.3.2 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.3.2?action=follow_copy&rev=HEAD&stop_rev=7457&mode=follow_copy
2012-01-11Update PLIST.sbd2-2/+6
Bump PKGREVISION
2011-12-27Prevent detection of OpenMP support in order to make PLIST consistent.asau1-1/+4
2011-12-09PKGREV bump for libXp-less openmotifdrochner1-2/+2
2011-12-02Recursive bump for devel/apr buildlink addition.sbd1-2/+2
2011-11-29Add pod2man and pod2html to USE_TOOLS.hans1-2/+2
2011-11-27parallels/pvm3: Add support for DragonFly64marino4-15/+43
Include string.h unconditionally and update the configuration to recognize DragonFly x86_64.
2011-11-01Recursive bump for graphics/freetype2 buildlink addition.sbd1-1/+2
2011-11-01Recursive bump for graphics/freetype2 buildlink addition.sbd1-2/+2
2011-10-09Update my emailcheusov2-4/+4
2011-09-05Add missing tool "pax"cheusov1-2/+2
2011-09-04For all packages based on mk-configure "configure" target is provided.cheusov1-3/+5
This fixes parallel builds.
2011-08-27+ threadingbuildingblocksasau1-1/+2
2011-08-27Import Threading Building Blocks 3.0 Update 6 as ↵asau5-0/+141
parallel/threadingbuildingblocks. Intel(r) Threading Building Blocks (Intel TBB) offers a rich and complete approach to expressing parallelism in a C++ program. It is a library that helps you take advantage of multi-core processor performance without having to be a threading expert. Intel TBB is not just a threads-replacement library. It represents a higher-level, task-based parallelism that abstracts platform details and threading mechanisms for scalability and performance.
2011-08-27Update to OpenMPI 1.5.4asau3-8/+9
Changes in v1.5.4 as compared to v1.5.3: - Add support for the (as yet unreleased) Mellanox MXM transport. - Add support for dynamic service levels (SLs) in the openib BTL. - Fixed C++ bindings cosmetic/warnings issue with MPI::Comm::NULL_COPY_FN and MPI::Comm::NULL_DELETE_FN. Thanks to Julio Hoffimann for identifying the issues. - Also allow the word "slots" in rankfiles (i.e., not just "slot"). (** also to appear in 1.4.4) - Add Mellanox ConnectX 3 device IDs to the openib BTL defaults. (** also to appear in 1.4.4) - Various FCA updates. - Fix 32 bit SIGBUS errors on Solaris SPARC platforms. - Add missing ARM assembly code files. - Update to allow more than 128 entries in an appfile. (** also to appear in 1.4.4) - Various VT updates and bug fixes. - Update description of btl_openib_cq_size to be more accurate. (** also to appear in 1.4.4) - Various assembly "clobber" fixes. - Fix a hang in carto selection in obscure situations. - Guard the inclusion of execinfo.h since not all platforms have it. Thanks to Aleksej Saushev for identifying this issue. (** also to appear in 1.4.4) - Support Solaris legacy munmap prototype changes. (** also to appear in 1.4.4) - Updated to Automake 1.11.1 per http://www.open-mpi.org/community/lists/devel/2011/07/9492.php. - Fix compilation of LSF support. - Update MPI_Comm_spawn_multiple.3 man page to reflect what it actually does. - Fix for possible corruption of the environment. Thanks to Peter Thompson for the suggestion. (** also to appear in 1.4.4) - Enable use of PSM on direct-launch SLURM jobs. - Update paffinity hwloc to v1.2, and to fix minor bugs affinity assignment bugs on PPC64/Linux platforms. - Let the openib BTL auto-detect its bandwidth. - Support new MPI-2.2 datatypes. - Updates to support more datatypes in MPI one-sided communication. - Fix recursive locking bug when MPI-IO was used with MPI_THREAD_MULTIPLE. (** also to appear in 1.4.4) - Fix mpirun handling of prefix conflicts. - Ensure mpirun's --xterm options leaves sessions attached. (** also to appear in 1.4.4) - Fixed type of sendcounts and displs in the "use mpi" F90 module. ABI is preserved, but applications may well be broken. See the README for more details. Thanks to Stanislav Sazykin for identifying the issue. (** also to appear in 1.4.4) - Fix indexed datatype leaks. Thanks to Pascal Deveze for supplying the initial patch. (** also to appear in 1.4.4) - Fix debugger mapping when mpirun's -npernode option is used. - Fixed support for configure's --disable-dlopen option when used with "make distclean". - Fix segv associated with MPI_Comm_create with MPI_GROUP_EMPTY. Thanks to Dominik Goeddeke for finding this. (** also to appear in 1.4.4) - Improved LoadLeveler ORTE support. - Add new WindVerbs BTL plugin, supporting native OpenFabrics verbs on Windows (the "wv" BTL). - Add new btl_openib_gid_index MCA parameter to allow selecting which GID to use on an OpenFabrics device's GID table. - Add support for PCI relaxed ordering in the OpenFabrics BTL (when available). - Update rsh logic to allow correct SGE operation. - Ensure that the mca_paffinity_alone MCA parameter only appears once in the ompi_info output. Thanks to Gus Correa for identifying the issue. - Fixed return codes from MPI_PROBE and MPI_IPROBE. (** also to appear in 1.4.4) - Remove --enable-progress-thread configure option; it doesn't work on the v1.5 branch. Rename --enable-mpi-threads to --enable-mpi-thread-multiple. Add new --enable-opal-multi-threads option. - Updates for Intel Fortran compiler version 12. - Remove bproc support. Farewell bproc! - If something goes wrong during MPI_INIT, fix the error message to say that it's illegal to invoke MPI_INIT before MPI_INIT.
2011-08-14Revision bump after updating perl5 to 5.14.1.obache1-2/+2
2011-07-05If it's going to install tcl scripts, and use REPLACE_INTERPRETER on them,dholland1-2/+3
it needs to depend on tcl. PKGREVISION -> 4
2011-07-03check-interpreter fix.jym1-1/+6
2011-05-23+parallel, oked by sponsorscheusov1-1/+2
2011-05-23GNU Parallel is a shell tool for executing jobs in parallel using one orcheusov4-0/+56
more machines. A job is typically a single command or a small script that has to be run for each of the lines in the input. The typical input is a list of files, a list of hosts, a list of users, or a list of tables.
2011-05-08PR pkg/37952. Minor clean-ups. Use only one line USE_TOOLS+=...cheusov1-4/+2
2011-05-07Closes PR pkg/44850, oked by wiz@ and reed@cheusov1-1/+2
devel/libmaa updated to 1.3.0 recursive bump pkgrevisions of dependent packages due to ABI change
2011-04-22recursive bump from gettext-lib shlib bump.obache2-4/+4
generated by cgit v1.2.3 (git 2.39.1) at 2024-12-12 17:48:51 +0000