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2010-01-31update MASTER_SITES.zafer1-2/+2
2010-01-19Update to OpenMPI 1.4.1:asau4-10/+9
- Update to PLPA v1.3.2, addressing a licensing issue identified by the Fedora project. See https://svn.open-mpi.org/trac/plpa/changeset/262 for details. - Add check for malformed checkpoint metadata files (Ticket #2141). - Fix error path in ompi-checkpoint when not able to checkpoint (Ticket #2138). - Cleanup component release logic when selecting checkpoint/restart enabled components (Ticket #2135). - Fixed VT node name detection for Cray XT platforms, and fixed some broken VT documentation files. - Fix a possible race condition in tearing down RDMA CM-based connections. - Relax error checking on MPI_GRAPH_CREATE. Thanks to David Singleton for pointing out the issue. - Fix a shared memory "hang" problem that occurred on x86/x86_64 platforms when used with the GNU >=4.4.x compiler series. - Add fix for Libtool 2.2.6b's problems with the PGI 10.x compiler suite. Inspired directly from the upstream Libtool patches that fix the issue (but we need something working before the next Libtool release).
2010-01-17Recursive PKGREVISION bump for jpeg update to 8.wiz1-2/+2
2010-01-12DragonFly build fix: treat DragonFly the same way as FreeBSD.asau1-2/+2
Catched by bulk builds, tested by Stathis Kamperis.
2009-12-15Recursive bump for libltdljoerg1-1/+2
2009-12-15Conflicts with "mpich" and "mpich2" packages.asau1-1/+4
Noticed by Helge Muehlmeier.
2009-12-13Update to MPICH2 1.2.1.asau10-189/+198
=============================================================================== Changes in 1.2.1 =============================================================================== # OVERALL: Improved support for fine-grained multithreading. # OVERALL: Improved integration with Valgrind for debugging builds of MPICH2. # PM/PMI: Initial support for hwloc process-core binding library in Hydra. # PM/PMI: Updates to the PMI-2 code to match the PMI-2 API and wire-protocol draft. # Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r5425:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2.1 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2.1?action=follow_copy&rev=HEAD&stop_rev=5425&mode=follow_copy =============================================================================== Changes in 1.2 =============================================================================== # OVERALL: Support for MPI-2.2 # OVERALL: Several fixes to Nemesis/MX. # WINDOWS: Performance improvements to Nemesis/windows. # PM/PMI: Scalability and performance improvements to Hydra using PMI-1.1 process-mapping features. # PM/PMI: Support for process-binding for hyperthreading enabled systems in Hydra. # PM/PMI: Initial support for PBS as a resource management kernel in Hydra. # PM/PMI: PMI2 client code is now officially included in the release. # TEST SUITE: Support to run the MPICH2 test suite through valgrind. # Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r5025:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2?action=follow_copy&rev=HEAD&stop_rev=5025&mode=follow_copy =============================================================================== Changes in 1.1.1p1 =============================================================================== - OVERALL: Fixed an invalid read in the dataloop code for zero count types. - OVERALL: Fixed several bugs in ch3:nemesis:mx (tickets #744,#760; also change r5126). - BUILD SYSTEM: Several fixes for functionality broken in 1.1.1 release, including MPICH2LIB_xFLAGS and extra libraries living in $LIBS instead of $LDFLAGS. Also, '-lpthread' should no longer be duplicated in link lines. - BUILD SYSTEM: MPICH2 shared libraries are now compatible with glibc versioned symbols on Linux, such as those present in the MX shared libraries. - BUILD SYSTEM: Minor tweaks to improve compilation under the nvcc CUDA compiler. - PM/PMI: Fix mpd incompatibility with python2.3 introduced in mpich2-1.1.1. - PM/PMI: Several fixes to hydra, including memory leak fixes and process binding issues. - TEST SUITE: Correct invalid arguments in the coll2 and coll3 tests. - Several other minor bug fixes, memory leak fixes, and code cleanup. A full list of changes is available using: svn log -r5032:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1p1 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1p1?action=follow_copy&rev=HEAD&stop_rev=5032&mode=follow_copy =============================================================================== Changes in 1.1.1 =============================================================================== # OVERALL: Improved support for Boost MPI. # PM/PMI: Significantly improved time taken by MPI_Init with Nemesis and MPD on large numbers of processes. # PM/PMI: Improved support for hybrid MPI-UPC program launching with Hydra. # PM/PMI: Improved support for process-core binding with Hydra. # PM/PMI: Preliminary support for PMI-2. Currently supported only with Hydra. # Many other bug fixes, memory leak fixes and code cleanup. A full list of changes is available using: svn log -r4655:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1?action=follow_copy&rev=HEAD&stop_rev=4655&mode=follow_copy =============================================================================== Changes in 1.1 =============================================================================== - OVERALL: Added MPI 2.1 support. - OVERALL: Nemesis is now the default configuration channel with a completely new TCP communication module. - OVERALL: Windows support for nemesis. - OVERALL: Added a new Myrinet MX network module for nemesis. - OVERALL: Initial support for shared-memory aware collective communication operations. Currently MPI_Bcast, MPI_Reduce, MPI_Allreduce, and MPI_Scan. - OVERALL: Improved handling of MPI Attributes. - OVERALL: Support for BlueGene/P through the DCMF library (thanks to IBM for the patch). - OVERALL: Experimental support for fine-grained multithreading - OVERALL: Added dynamic processes support for Nemesis. - OVERALL: Added automatic as well as statically runtime configurable receive timeout variation for MPD (thanks to OSU for the patch). - OVERALL: Improved performance for MPI_Allgatherv, MPI_Gatherv, and MPI_Alltoall. - PM/PMI: Initial support for the new Hydra process management framework (current support is for ssh, rsh, fork and a preliminary version of slurm). - ROMIO: Added support for MPI_Type_create_resized and MPI_Type_create_indexed_block datatypes in ROMIO. - ROMIO: Optimized Lustre ADIO driver (thanks to Weikuan Yu for initial work and Sun for further improvements). - Many other bug fixes, memory leak fixes and code cleanup. A full list of changes is available using: svn log -r813:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1 ... or at the following link: https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1?action=follow_copy&rev=HEAD&stop_rev=813&mode=follow_copy
2009-12-12+ openmpiasau1-1/+2
2009-12-12Import OpenMPI 1.4 as parallel/openmpi.asau18-0/+1122
OpenMPI is open source MPI-2 implementation.
2009-12-11Update to OpenPA 1.0.2.asau3-7/+8
New in OpenPA v1.0.2: Major Changes: * Add support for 64-bit PPC. * Static initializer macros for OPA types. balaji (1): * Fix pthread_mutex usage for inter-process shared memory regions. buntinas (1): * added OPA typedef for pthread_mutex_t fortnern (4): * Add more tests for compare-and-swap. * Add integer compare-and-swap fairness test. * Add pointer version of compare-and-swap fairness test. * Added configure test for pthread_yield. goodell (6): * Fix bad include guard in the opa_by_lock.h header. * Add new "unsafe" primitives. Also minor updates to the docs. * Add support for 64-bit PPC. * Update README to reflect 64-bit PPC support. * Add static initializer macros for OPA_int_t/OPA_ptr_t. * Actually include the COPYRIGHT and CHANGELOG files in the distribution. jayesh (1): * Fixed compiler warnings in NT intrinsics. Now type casting the arguments to NT intrinsics correctly
2009-12-10Support staged installation.asau4-10/+163
2009-12-03Follow f2c/libf2c split: bump revision of all packagesasau3-4/+6
that list Fortran in used languages.
2009-11-26Remove parallel/glunix. It fails in the patch phase on NetBSD 4 andjoerg79-4220/+1
later. After fixing that, it fails with C++ errors, so it couldn't have been build at least for 3 years. Assume noone cares.
2009-11-10Update to v3.1.2. The number of changes over the intervening years isbrook27-3618/+102
too large to list here. See the ChangeLog file or the home page for details.
2009-10-26Add "openpa".asau1-1/+2
2009-10-23Import OpenPA 1.0.1 as parallel/openpa.asau5-0/+57
OpenPA is open source, highly-portable library that provides atomic primitives (and related constructs) for high performance, concurrent software.
2009-09-13Remove parallel/openpbs as announced on pkgsrc-users and tech-pkg.asau9-321/+1
2009-08-19Fix installed manual pages to correctly refer to SGE rather than GE.markd1-3/+10
Also fix some interpreter paths. Bump PKGREVISION.
2009-06-14Remove @dirrm entries from PLISTsjoerg10-142/+10
2009-06-11regen distinfo to refrect last update.obache1-11/+16
2009-05-19Update to PVM 3.4.6asau4-20/+19
Changes since previous release: - security fixes; - update of the BEOLIN architecture port; - miscellaneous bug and documentation fixes.
2009-05-13Update sge to 6.2.2.1markd18-129/+265
Grid Engine 6.2, which has undergone significant changes in qmaster to significantly improve its scalability in challenging environments, adds powerful features to the core system, introduces multi cluster support for the Accounting and Reporting Console (ARCo) and comes with a new module extending the scope of Grid Engine to a new domain of use cases: the Service Domain Manager (SDM), aka. project Hedeby allows to dynamically (re-)assign computational resources on demand. plus lots of bug fixes.
2009-04-08Remove the remaining NO_MTREE definitions, it has been a nop for ajoerg1-2/+1
while.
2009-03-20Simply and speed up buildlink3.mk files and processing.joerg2-27/+12
This changes the buildlink3.mk files to use an include guard for the recursive include. The use of BUILDLINK_DEPTH, BUILDLINK_DEPENDS, BUILDLINK_PACKAGES and BUILDLINK_ORDER is handled by a single new variable BUILDLINK_TREE. Each buildlink3.mk file adds a pair of enter/exit marker, which can be used to reconstruct the tree and to determine first level includes. Avoiding := for large variables (BUILDLINK_ORDER) speeds up parse time as += has linear complexity. The include guard reduces system time by avoiding reading files over and over again. For complex packages this reduces both %user and %sys time to half of the former time.
2009-03-08Fix MAINTAINER.hasso1-2/+2
2009-02-22Use MASTER_SITE_NETLIB for Netlib and its mirrors.asau1-2/+2
Discussed with Tobias Nygren.
2009-02-16Fix maintainerjoerg1-2/+2
2009-02-09Switch to Python 2.5 as default. Bump revision of all packages that havejoerg1-1/+2
changed runtime dependencies now.
2009-01-23Give up maintainership, as I have not so much as looked at pkgsrc injschauma2-4/+4
well over a year now. Sorry. :-(
2008-12-21Update MPICH2 to 1.0.8, maintainer update request by PR 40239.obache7-64/+87
Changes since 1.0.7: - Added support for MPI 2.1 - Added support for MPI_Type_create_resized and MPI_Type_create_indexed_block datatypes in ROMIO. - Bug fixes, memory leak fixes and code cleanup.
2008-12-16Use ssh for SUN4SOL2, like everywhere else. Bump revision.is3-3/+17
2008-11-26Update SGE to 6.1.5markd5-25/+36
patch-au compiles sge_arch.c with -ansi so that stringification hack works on NetBSD and FreeBSD and probably others. Otherwise architecture names like nbsd-i386 turn into nbsd-1 - From the FreeBSD port. Bugs fixed in SGE 6.1u5 since release 6.1u4 wrong documentation for upgrade 6.0u2 and higher to 6.1u2 and higher Multiple loadsensor instances are trying to access the same temp load file on AIX51 Validation of the Filter List in Simple Query builder fails qhost -l h=<hostname> does not work Numbers in error mail too large use of the same pathes for input/output stream must be dealt with DRMAA Java language binding segfaults on Session.exit() with sol-x86 binaries on AMD64 sgeexecd startup script shouldn't suppress error messages from sge_execd binary Advanced Query with wild card character * does not produce correct results. 'Infinity' must be rejected when specified in 'complex_values' or RQS limits for consumables Invalid qconf -mrqs crashes qmaster with segmentation fault RQS: Line wrap of host list introduces syntax error Row Limit in ARCo Simple Query builder cannot be empty loadsensor does not work on AIX51 qhost -xml has wrong namespace QMON: The help for Resource Quotas is not available qmon fills in fields incorrectly for restoring config for Submit Job sgemaster -qmaster stop shutdowns also shadowd incorrect depencency on xinetd in init scripts for linux Latebindings for Advanced Queries does not work Switching from Simple Query to Advanced Query removes the Latebingings 32-bit Linux binaries are having problems with file access in 64-bit NFS environments using of default_domain may prohibit execd installation Commlib might crash if running out of memory Configuration file check of automatic installation does not recognize remsh loadcheck prints error message "kstat finds too many cpus" Communication library thread locking problem results in qmaster crash ARCo should not print exception stack trace in the console TABLESPACE values should be written to dbwriter.conf Incorrectly considering two host group names to be the same Clients not disconnecting correctly SGE util/arch script is broken for AIX 5.3 Operating System error message given by qalter -q '' <jobid> suggests a memory access problem bootstrap(5) man page sees itself als sge_conf(5) qmaster reinstall overwriting an existing installation fails qconf -ae|-Ae return 0 even if exechost exists already qconf -dxxxx does not set exit status on error qconf -as, -am, -ao, -Ae, -Acal, -Ackpt, -Ap when msg "already exist" should return not 0 exit code qconf -acal doesn't return error code 1 when failed setting of QMaster port number leads to infinite loop use of -l tmpdir=abc can crash schedd load scaling display not working correctly qstat -j does not print array task information job hold due to -hold_jid is not indicated as STATE_SYSTEM_ON_HOLD by drmaa_job_ps(3) Segmentation fault of sge_schedd A load sensor reporting values for other hosts does not work reporting file is lacking information about global consumables, if log_consumables=false Wallclock_Time query should be more constrained "./install_execd -winsvc -auto /path/to/auto.conf" command causes error The default has to be local spool directory when install_execd is run for a Windows host qmaster runs out of memory on AIX dbw install parameters are not verified Incorrect slots_total from qstat -F -xml output Wrong permissions if install_qmaster creates qmaster spool directory Installation of execution daemon left user unclear which port was chosen. Exception occurs during the exportation of a query result to pdf memory leak in sge_execd with qsub -v SGE_* or qsub -V ARCo should support SJWC 3.1 Bugs fixed in SGE 6.1u4 since release 6.1u3 on Windows installation fails when installing as root and SGE admin user = none accounting records for slave tasks of pe jobs should contain the correct task submission time check if config parameters qlogin_daemon and rlogin_daemon are pathes parallel scheduling memory leak in sge_schedd execd installation does not test absolute path for local spool dir Sort on table column throws exception if explicit SORT specified in SimpleQuery Sort on table column Error.jsp contains unbalanced tagError.jsp contains unbalanced tag arco_read should be able to create synonyms instead of arco_write DBW should use batch inserts prolog an epilog descriptions should include exit codes It is possible to negative tickets / shares in qmon and from the command line ORDER BY clause ignored in Advanced Query Queue Consumables query incorrect in ARCo predefined queries CLI accepts the slot number of more than 10000000 ARCo online help contains invalid, unclear or outdated information the installation of two rpc databases on the some host fails DBWriter should not exit if there is a database connection error Reporting 'View' dropdown menu and 'Save Result' functionality is confusing DBW derived rules and reporting queries that count jobs need to be updated incomplete error loging in case of classic spooling failures Row Limit in Simple Query uses wrong syntax NONE' as value is not rejected for queue_conf(5) shell and qsub(1) -S Upgrade to 6.1u3 fails for PostgreSQL < 8.0, minor issues i dbdefinition.xml for PSQL > 8.0 dbwriter should write checkpoint to database dbwriter deletion rules delete tasks of pe_jobs unclear 'exit_status' description in accounting(5) about Grid Engine specific status autoinstall configfile should be parsed and checked for valid input! qstat -j output is broken for shell_path the project field should be displayed in the qstat -j output Wrong variable for calculating daily host values from hourly ones Pending PE job qstat -j output displays addtional useless message when not running because of RQs automatic backup is broken! Spelling mistakes in the qmon help menus deletion rule for PostgreSQL incorrect for deletion of sge_share_log qquota broken if quota definition contains "hosts" or "users" scope negation Access_list(5) man page not precise enough with regards secondary/primary group(s) RQS debitation of running jobs is broken if enabled by -mattr Set SGE_QMASTER_PORT in settings file if sge_qmaster is not found in /etc/services file Failed to deliver STOP signal for subordinated jobs Missing array job task usage in the accounting file qhost/qstat can't be interrupted with ctrl-c typographical errors in messages from install_qmaster Sort order and row limit cannot be specified together in ARCo Simple Query builder Qmaster segfaults with long host resource evaluation expression Error message for unsupported platforms should be more verbose qsub does not accept resource strings size larger than 256 Memory leak in drmaa_run_job()/drmaa_run_bulk_job() ARCo reporting module installation script is broken on Red Hat Enterprise Linux 4 Update 4 Job predecessor list missing from qstat -j output In SJWC on Oracle dates appear truncated to just MM/DD/YYYY configfile check in automatic installation is to strict load sensor might block execd port Uninstallation of remote execd if not interactive Infotext spawned on remote machine with -wait or -ask does not display the text Uninstall does not remove the SGE_STARTUP_SCRIPT qmaster crashes when SGE_ND=1, dl 2 and BDB server spooling inst_sge -ux all -um fails Usage string for some commands is incomplete dbwriter installation can't finish on large amount of data reprioritize disappears after sge_qmaster restart qmaster failover should not change the state of any queue
2008-11-10Bump PKGREVISION for libXaw API depends bump due to libXaw8 removal.wiz1-2/+2
2008-10-19Bump the PKGREVISION for all packages which depend directly on perl,he2-2/+4
to trigger/signal a rebuild for the transition 5.8.8 -> 5.10.0. The list of packages is computed by finding all packages which end up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl, or PERL5_PACKLIST defined in their make setup (tested via "make show-vars VARNAMES=...").
2008-09-19Rename dehumanize_number to avoid conflict with libc.joerg2-1/+15
2008-09-15Bugs fixed in SGE 6.1u3 since release 6.1u2ahoka10-95/+224
------------------------------------------- Issue Sun BugId Description -------- --------- ------------------------------------------------------------------------------------------ 376 4743006 problem with floating point job resource limits 1909 6353628 information provided by qstat -j and qstat -j -xml are not equivalent 2076 6440408 qstat -j messages disagree between plain, XML output 2077 6440412 qstat -j -xml messages incomplete 2138 6506667 forbid deletion of global config values 2194 6527836 authuser binary returns unusable error message! 2249 6568575 SGE does not work if primary group entry is too big in groups map 2270 6575720 ENABLE_ADDGRP_KILL is missing from sge_conf(5) 2272 6575727 sge_shadowd(8) man page is missing some env vars 2274 6564461 Duplicate scheduling info messages for reservation jobs 2276 6575731 share_tree(5) doesn't explain type field 2283 6565821 Oracle, Postgres DWB should prompt for tablespace where indexes and tables should be created 2293 6569088 Resource reservation broken for sequential jobs depending on RQS specified for subset of queues only 2303 6571749 parallel resource reservation broken when non-queue instance based quotas limits apply 2323 6576153 Creating a userset with NONE as a type results in a core dump 2327 6578213 qconf -(A,D,M,R)attr dumps core when the supplied file is empty 2328 6579232 high scheduler dispatching time with many sequential resource reservation jobs and resource quotas 2336 6287501 rctemplates lack of requirement 2338 6585721 Parallel RR broken if jobs wait for queue slots and no RQS configured 2342 6590010 Original primary group vanishes after newgrp command (USE_QSUB_GID=true) 2344 6590079 Resource reservation broken with sequences of identical jobs differing only in their -R y|n 2346 6604155 qmon binary job submit is broken 2351 6597463 qsub -t 1-N:N creates a normal job with one task 2352 6594665 Installation fails on Linux with glibc 2.6 2353 6597423 commit method of UnixLoginModule does not report RuntimeExceptions 2356 6600619 Userset spooling in classic mode is broken 2367 6597547 qdel does not recognize wc_job_range_list as it is defined 2369 6577034 Several qconf options display only single message when a list of messages should be printed 2372 6469494 clients should issue a more explicit error message when qmaster is busy 2374 6589459 Expose the availability of keyword "none" in the manual page of calendar_conf 2382 6569862 Unset old_value out of the scope 2383 6553062 qconf -mc accepts erroneous resource entries without an urgency; qmon gives (poor) error message 2387 6614041 Multiple occurrence of a name in RQS limit definition break classic spooling 2392 6614108 Specifying more than one drmaa_v_env attribute causes spurious error msg 2394 6608259 scheduler prints empty line in messages file after every 'sge_mirror' logging 2396 6608236 scheduling of parallel jobs does not respect consumables, if consumable is referenced in rqs 2400 6564543 sge_shepherd should exit if it cannot write to any of its essential files 2401 6617450 add option to reporting_params for switching off writing of consumables 2404 6618328 qmon displays wrong string for queue filtering 2406 6596931 Incorrect messages in qconf command 2407 6618619 the restore feature does not delete old configuration before restoring 2409 6619016 removing parameters from the reporting_params will not fallback to the default 2410 6619657 qmod -e|-d '*' times out in large clusters 2411 6619662 qhost becomes sluggish in large clusters 2414 6618599 Long running jobs cause incorrect usage summary for ARCo database 2415 6620930 ARCO view_accounting filters out parallel job usage incorrectly 2416 6621482 ju_exit_status should provide means to recognize the intermediate record 2417 6622842 the start_time field in intermediate accounting records is incorrect 2418 6588743 qrsh fails with "connection refused" error message 2419 6391244 qstat -ext reports wrong usage as compared to other commands such as qstat -t or qstat -j 2424 6620253 During the installation the admin user should create web.xml file 2428 6630268 upgrade from 6.0u2 and higher to 6.1u2 and higher does not work 2435 6599335 inst_sge help output for -upd switch is incorrect Bugs fixed in SGE 6.1u2 since release 6.1u1 ------------------------------------------- Issue Sun BugId Description -------- --------- ------------------------------------------------------------------------------------------ - 6590960 Man pages show the wrong version number 2345 6590574 resource quota can prevent dispatching of jobs that requests no resource in this quota 2343 6589807 newline missing from "illegal debug level format" message 2338 6585721 Parallel RR broken if jobs wait for queue slots and no RQS configured 2334 6584632 user/system/operator hold state combinations cause strange qstat output Bugs fixed in SGE 6.1u1 since release 6.1 ----------------------------------------- Issue Sun BugId Description -------- --------- ------------------------------------------------------------------------------------------ 2323 6576153 Creating a userset with NONE as a type results in a core dump 2317 6574565 Oralce, Postgres FOREIGN KEY fields need to be indexed - 6573980 'qconf -help' suggests usage of patterns in user_list which is not true 2316 6573508 qrsh with ssh causes job to go in error state when Ctrl-C is pressed 2308 6572803 qhost -xml lacks '>' with initial qhost tag 2309 6572801 sge_queue_values definition does not contain PRIMARY KEY 2321 6571714 Inadequate error message when qconf -sstree is run when no share tree is configuredIf no share tree 2241 6568712 util/arch has problem recognizing libc version number with comma 2292 6568578 6.1 upgrade procedure shall exit when there are jobs in the cluster 2249 6568575 SGE does not work if primary group entry is too big in groups map 2284 6565841 Oracle: rollback segments keep filling up, Postgres: delete query keeps running 2306 6564592 SGE 6.1 upgrade procedure is broken when using the classic qmaster spooling 2275 6564503 sge_schedd deadlock upon schedd_job_info job_list being enabled 2250 6558006 qmaster may crash with projects or usersets used in RQS 2243 6555744 qmon crashes when displaying about dialog 2248 6554313 add -u <user> to scheduler category only if there is a resource quota for the user 2238 6551568 need faster resource quota matchmaking and more concise job info messages - 6550718 qstat -j lacks resource quota info messages in case of "incomplete" resource quotas 2296 6548455 csp mode installation, using /etc/services, qmaster is not starting! 2232 6546807 qhost -j -xml does not work 2325 6542987 drmaa_run_job(3) raises error if drmaa_native_specification has leading spaces 2239 6542137 use of hostgroups in resource quotas is less performant than the full list of hosts - 6541085 NFS write error on N1GE trace file 2300 6539199 qquota(1) filtering broken for project and pe if -P/-pe switch is not used 2299 6536039 sgeremoterun not working 2201 6529974 Use of MORE fails on some architectures - 6528949 inst_sge -ux uninstallation of exechost tries to delete local spooldir, even it isn't configured! 2191 6525883 qstat -s hX filtering is broken on darwin 2189 6525375 qacct ignores jobs in output 2320 6513115 in qmon, under calendar configuration, it is possible to modify even if no calendar exists 2326 6506661 sge_conf(5), description for rlogin_daemon and qlogin_daemon is wrong 2307 6433628 qconf -sq all.q@myhost produces no value at all for complex_values (not even NONE) 2289 6565951 Qmon panel does not check for valid data in Scheduler Configuration 2314 6513116 Qmon x qconf inconsistent in allowed characters in attribute names - 6195248 QMON Job Control Window: Incomprehensible Priority Button 2313 6410592 Double clicking in Consumables/Fixed Attributes list does not behave as a GUI should 2312 6482211 complex attributes whose deletion is denied donot reflect back after the denial message in qmon 2301 6551121 Memory leak in libdrmaa.so 916 6355875 qsub -terse to just output job id - 6522273 Wrong exit code with qconf -sds 2266 6563346 Wrong usage of 'day' format model in trunc(date) Oracle functions 2187 6562190 memory leak in sge_schedd 2265 6280747 qmon loses sharetree changes 747 6291044 "Modify"-Button is activated but should be grayed 2263 6553066 qmon's Complex Configuration Load and Save buttons did not work 2262 4742097 Qmon has a ticket number limitation 1729 4818801 qmon on secondary screen crashes when "Job Control" is pressed 2261 6538740 clear usage operation should implicitely trigger refresh in share-tree dialogue 2260 6327539 Ability to sort queue instances using each column of the queue instances table 2229 6544869 UNKNOWN group/owner in accouting(5) 2247 6556411 DBW queries "Average Job Turnaround Time", "Average Job Wait Time" might not work - 6481737 Arco should support webconsole 3.0.x - 6559385 Calling JGDI getQueueInstanceSummary results in a memory leak 1813 6328064 Queue request -q from sge_request can't be overridden through command line - 6355674 arcorun can not be used as sge_admin user if the toc file is not available 2164 6514085 Need a possibility to update existing example queries for the ARCo web application - 6426331 remove util/sge_log_tee from distribution - 6476263 function job_get_id_string() is not MT save and used in qmaster 2219 6536426 inst_sge -m fails for non-root when USER variable is not set 1860 6345522 qdel on a job in deleted state does not output any information 2258 5081743 queue status in reporting file is missing. 2050 6422335 still used usersets/project/calendar/pe/checkpoint can be removed under certain conditions Bugs fixed in SGE 6.1 since release 6.1_beta -------------------------------------------- Issue Sun BugId Description -------- --------- ------------------------------------------------------------------------------------------ 1941 5086007 qstat -qs doesn't work 2183 6499217 meaningless error in clients when reporting_param flush_time is incorrectly set - 6525497 JGDI crashes JVM when null is passed to JNI GetStringUTFChars function 2220 6440226 add installation of SGE_Helper_Service to auto installation 2221 6521802 the binary check in inst_sge is wrong! - 6537633 Extraneous space in qsub's "Invalid month specification." message 2222 6538293 Hybrid user/project share-tree is broken for user sharing amongst array jobs 2180 6518684 Qconf usage x man page inconsistency 2181 6518689 Project man page contains different attribute names. 2171 6516288 Scheduler does not write pid file in daemonize phase 2178 6518607 invalid memory access in cl_com_get_handle - 6520761 add background mode to N1 Grid Engine Helper Service - 6233523 loadcheck reports on a hyperthreaded CPU only one processor - 6276612 provide support for Itanium platform 752 6288953 scalability issue with qdel and very large array jobs 751 6291047 qconf -sstnode cannot find root - 6303750 Install guide ambiguous on role of CSP 1930 6329378 incorrect qsub error message, if an invalid integer value is passed to the -l option 1858 6344960 qtcsh behaves differently in direct mode from qrshmode 1933 6349037 "qstat -explain E" displays explanation of the same error two times. 1940 6362523 qstat -q filter does compare hosts in queue instances - 6363245 on some Windows execution hosts, execd hangs after the job has finished 1978 6383256 no newline at end of sge_shepherd's exit_status messages - 6395078 wrong entry in sgepasswd file wrongly sets whole host in error state 2012 6402127 qconf -suserl reports incorrect status if no users are defined - 6403152 qconf -as returns error code 0 even in case of unresolvable host 2015 6403810 JavaDocs for DRMAA need improvement - 6428621 add a reserved complex value to control displaying Windows GUIs - 6453426 Event clients will not get list updates, when they change their subscription after the registration - 6461308 Wrong path to spooled parallel jobs with using classic spooling 2130 6501447 No online usage for MacOS X 2141 6506701 sge_shepherd dumps core on linux amd64 for qrsh jobs with very long cmdline (> 10k) 2233 6528950 modifying a RQS with invalid syntax results in its deletion - 6533952 Admins guide does not mention that parallel environments must be linked with queues - 6535768 Upgrade chapter 5 in 6.1 install guide must mention abolition of LD_LIBRARY_PATH for Solaris/Linux - 6535775 Upgrade chapter in 6.1 Install Guide wrongly indicates upgrade from 5.3 were possible - 6537476 6.1 install guide broken and incomplete wrts MySQL installation for ARCO - 6537607 6.1 Admins guide needs improvement on the linking between queues and parallel environments - 6539215 quota verification time may not grow with the number of queues 2224 6539792 resource quotas broken after qmaster restart - 6542483 Important changes with Resource Quota chapter in 6.1 admins guide - 6545277 sge_statistic tables are not documented 2230 6546370 Pivot for ARCo Accounting Queries does not show all the fields 2231 6546802 qstat -F -xml does not show resources Bugs fixed in SGE 6.1_beta since release 6.1_preview2 ----------------------------------------------------- Issue Sun BugId Description -------- --------- ------------------------------------------------------------------------------------------ - 6267190 Typo before "About the urgent priority" in Admin Guide 1445 6291021 64 bit solaris BDB rpc server broken 1703 6295319 Admin guide: refers to sge_host(5) instead of host_conf(5) - 6344917 Error in Embedded Command Line Options example - 6395075 on Windows, execd doesn't provide useful error messages when SSL keys broken 2188 6421113 CSP mode auto installation: certificates are not copied to submit hosts - 6444526 Admin guide describes N1GE backup facility, but restore is not described 2196 6472614 Auto installation option failed to save the install log 2182 6513433 remote installation of execd's need enhancement, rework, cleanup 2139 6506690 dbwriter should not use autocommit mode - 6520257 need to define continuation character behaviour with qconf file formats - 6521285 describe useful characters for every parameter 2185 6522385 qmon crash in cluster configuration dialog when modifying a host 2192 6525917 qacct -l h=<hostname> dumps core on darwin and linux itanium 2198 6528808 sge_ca script fails on nfs no root access file systems 2202 6530335 qmaster aborts when a resource quota set is modified while jobs are running 2204 6531317 qstat -xml does not show pending/zombie jobs 2206 6531921 qstat -r -xml is not working 2207 6533754 resource quota are modified on qconf -mrqs, even if the editor is exited without saving Bugs fixed in SGE 6.1_preview2 since release 6.1_preview1 --------------------------------------------------------- Issue Sun BugId Description -------- --------- ------------------------------------------------------------------------------------------ - 5093930 ARCo should work with MySQL - 5101053 Regular expressions should also be mentioned in qsub in addition to complex - 5101735 Needs more boolean operators support for resource requests 56 6205203 Logical OR operator works only with complex attributes of type RESTRING 2135 6506115 Invalid qconf -mattr crashes qmaster 2150 6507572 qconf -Arqs added invalid RQS 2146 6510635 Default requests for complexes not honored by resource quotas 2161 6513944 qmaster core dump with usersets referenced in RQS 2162 6513967 unix groups are not considered by RQS 2166 6515122 add -wd working_dir in addition to -cwd option for submission
2008-09-06Recursive PKGREVISION/ABI-depends bump for db4 4.6->4.7 update (shlibwiz2-4/+4
name change).
2008-08-11Update from version 1.3.0nb4 to 1.4.0. Changes:he3-23/+7
1.4.0-pre1 ---------- 2005-07-16 Ernst Rohlicek jun. <ernst.rohlicek@inode.at> * Pvm.xs, Pvm.pm: Finished adding functionality of PVM v3.4 - siblings, contexts and message boxes with their according new contants. All added functionality tested. Message handlers still missing. Testing routines for inclusion in package still missing. NOTE: Also created an ebuild (installation script) for the Gentoo distribution.
2008-07-14Mark as destdir ready.joerg1-1/+3
2008-07-11Add missing dependency on X11. Based on maintainer's PR 39107.obache2-2/+24
Fixes build failure with X11_TYPE=native. While here, bin/mpdroot marked as special perms. Bump PKGREVISION.
2008-07-05point HOMEPAGE at archive.org copy.tnn1-2/+2
(The package should probably go away eventually, like the homepage did.)
2008-06-23PR 38996: Drop -DDFAKEXDRFLOAT for DragonFly, it breaks the build.joerg1-2/+2
2008-06-20Add DESTDIR support.joerg1-8/+11
2008-06-12Add DESTDIR support.joerg2-40/+42
2008-06-07Requre curses library.obache2-17/+20
Bump PKGREVISION. While here, marked as DESTDIR ready, sort PLIST. Patch from Aleksej Saushev in PR 38879.
2008-05-29prune wip referencetnn1-2/+2
2008-05-29Update to mpich2-1.0.7. From pkgsrc-wip, contributed by Aleksej Saushev.tnn25-2526/+809
MPICH2 is an all-new implementation of MPI from the group at Argonne National Laboratory. It shares many goals with the original MPICH but no actual code. It is a portable, high-performance implementation of the entire MPI-2 standard. This release has all MPI-2 functions and features required by the standard with the exception of support for the "external32" portable I/O format.
2008-05-26Second round of explicit pax dependencies. As reminded by tnn@,joerg2-10/+11
many packages used to use ${PAX}. Use the common way of directly calling pax, it is created as tool after all.
2008-02-27Update ClusterIt to 2.5.garbled8-43/+40
Major enhancements: A new program, dtop, allows the user to run top across multiple machines and collate the results in real-time. The default remote commands have been changed over to ssh from rsh. A test option has been added to all commands to check if SSH is up and running before attempting an SSH connection that might otherwise hang. A flag has been added to dsh allowing the user to copy, execute, and delete a script on all machines in one step. There are many other small bugfixes and enhancements.
2008-02-09Needs m4tnn1-1/+3
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