From 9664f306e36fd092410ff18c764d7924d8267b83 Mon Sep 17 00:00:00 2001
From: bacon <bacon@pkgsrc.org>
Date: Wed, 24 Mar 2021 18:22:53 +0000
Subject: biology/vcf2hap: import vcf2hap-0.1.2

vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
is required by haplohseq.
vcf2hap is extremely fast and requires a trivial amount of memory regardless of
the size of the VCF file.
---
 biology/vcf2hap/DESCR    |  4 ++++
 biology/vcf2hap/Makefile | 19 +++++++++++++++++++
 biology/vcf2hap/PLIST    |  3 +++
 biology/vcf2hap/distinfo |  6 ++++++
 4 files changed, 32 insertions(+)
 create mode 100644 biology/vcf2hap/DESCR
 create mode 100644 biology/vcf2hap/Makefile
 create mode 100644 biology/vcf2hap/PLIST
 create mode 100644 biology/vcf2hap/distinfo

diff --git a/biology/vcf2hap/DESCR b/biology/vcf2hap/DESCR
new file mode 100644
index 00000000000..0d3f7bc3d89
--- /dev/null
+++ b/biology/vcf2hap/DESCR
@@ -0,0 +1,4 @@
+vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file
+is required by haplohseq.
+vcf2hap is extremely fast and requires a trivial amount of memory regardless of
+the size of the VCF file.
diff --git a/biology/vcf2hap/Makefile b/biology/vcf2hap/Makefile
new file mode 100644
index 00000000000..de91656004d
--- /dev/null
+++ b/biology/vcf2hap/Makefile
@@ -0,0 +1,19 @@
+# $NetBSD: Makefile,v 1.1 2021/03/24 18:22:53 bacon Exp $
+
+DISTNAME=	vcf2hap-0.1.2
+CATEGORIES=	biology
+MASTER_SITES=	${MASTER_SITE_GITHUB:=auerlab/}
+
+MAINTAINER=	bacon@NetBSD.org
+HOMEPAGE=	https://github.com/auerlab/vcf2hap
+COMMENT=	Generate .hap file from VCF for haplohseq
+LICENSE=	2-clause-bsd
+
+pre-build:
+	cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend
+
+do-test:
+	cd ${WRKSRC}/Test && ./run-test.sh
+
+.include "../../biology/biolibc/buildlink3.mk"
+.include "../../mk/bsd.pkg.mk"
diff --git a/biology/vcf2hap/PLIST b/biology/vcf2hap/PLIST
new file mode 100644
index 00000000000..37845b33c01
--- /dev/null
+++ b/biology/vcf2hap/PLIST
@@ -0,0 +1,3 @@
+@comment $NetBSD: PLIST,v 1.1 2021/03/24 18:22:53 bacon Exp $
+bin/vcf2hap
+man/man1/vcf2hap.1
diff --git a/biology/vcf2hap/distinfo b/biology/vcf2hap/distinfo
new file mode 100644
index 00000000000..6a24c1fa8d7
--- /dev/null
+++ b/biology/vcf2hap/distinfo
@@ -0,0 +1,6 @@
+$NetBSD: distinfo,v 1.1 2021/03/24 18:22:53 bacon Exp $
+
+SHA1 (vcf2hap-0.1.2.tar.gz) = a18bc1746ec4df4be88d635c18b0a6b240d2c309
+RMD160 (vcf2hap-0.1.2.tar.gz) = a7ec7f863888e005b84f59db7c2787ec19e960de
+SHA512 (vcf2hap-0.1.2.tar.gz) = 4a4b3c0c63e711f7f9a57706c675bb02f9d55976b6ee3aee1e1d1eeb14f2d92a62ad952e2c03fbe5ab525174b01260b5cb305c9980b48411618bf7e9669ae7f6
+Size (vcf2hap-0.1.2.tar.gz) = 197782 bytes
-- 
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