From 273821c4d377411699fe450ab9d48f7e5933d9b6 Mon Sep 17 00:00:00 2001 From: zuntum Date: Wed, 31 Oct 2001 20:59:00 +0000 Subject: Move pkg/ files into package's toplevel directory --- biology/bioperl/DESCR | 11 +++++++ biology/bioperl/PLIST | 81 +++++++++++++++++++++++++++++++++++++++++++++++ biology/bioperl/pkg/DESCR | 11 ------- biology/bioperl/pkg/PLIST | 81 ----------------------------------------------- 4 files changed, 92 insertions(+), 92 deletions(-) create mode 100644 biology/bioperl/DESCR create mode 100644 biology/bioperl/PLIST delete mode 100644 biology/bioperl/pkg/DESCR delete mode 100644 biology/bioperl/pkg/PLIST (limited to 'biology/bioperl') diff --git a/biology/bioperl/DESCR b/biology/bioperl/DESCR new file mode 100644 index 00000000000..8c86b48648d --- /dev/null +++ b/biology/bioperl/DESCR @@ -0,0 +1,11 @@ + The Bioperl project is a coordinated effort to collect computational +methods routinely used in bioinformatics into a set of standard +CPAN-style, well-documented, and freely available Perl modules. Perl +provides unparalleled support for many tasks common in bioinformatics +yet there are no standard Perl modules for biology. Bioperl hopes to +help fill this void. + + Bioperl modules and source code will always be freely available +under the same terms as Perl itself. The Bioperl project is open to +all and we invite suggestions and participation from the larger +bioinformatics community. diff --git a/biology/bioperl/PLIST b/biology/bioperl/PLIST new file mode 100644 index 00000000000..4323bdd8e94 --- /dev/null +++ b/biology/bioperl/PLIST @@ -0,0 +1,81 @@ +@comment $NetBSD: PLIST,v 1.1 2001/10/31 21:27:53 zuntum Exp $ +share/examples/bioperl/blast/out/blastn.2.gz +share/examples/bioperl/blast/out/blastn.2.wu.gz +share/examples/bioperl/blast/out/blastp.1.gcg.gz +share/examples/bioperl/blast/out/blastp.1.gz +share/examples/bioperl/blast/out/blastp.2.gz +share/examples/bioperl/blast/out/blastp.2.nogap.gz +share/examples/bioperl/blast/out/blastp.2.wu +share/examples/bioperl/blast/out/blastp.205.gz +share/examples/bioperl/blast/out/blastp.2a.gz +share/examples/bioperl/blast/out/blastp.2b.gz +share/examples/bioperl/blast/out/blastp.email.html.gz +share/examples/bioperl/blast/out/blastx.2 +share/examples/bioperl/blast/out/blastx.2.email.gz +share/examples/bioperl/blast/out/blastx.208.gz +share/examples/bioperl/blast/out/tblastn.206.out.gz +share/examples/bioperl/blast/seq/acc1.dna.fasta +share/examples/bioperl/blast/seq/seqs.fasta +share/examples/bioperl/blast/seq/yal011w.dna.fasta +share/examples/bioperl/blast/seq/yel009c.fasta +share/examples/bioperl/blast/seq/ymr284w.fasta +share/examples/bioperl/blast/blast_config.pl +share/examples/bioperl/blast/blast_seq.pl +share/examples/bioperl/blast/example.table1 +share/examples/bioperl/blast/example.table2 +share/examples/bioperl/blast/html.pl +share/examples/bioperl/blast/parse_blast.pl +share/examples/bioperl/blast/parse_blast2.pl +share/examples/bioperl/blast/parse_multi.pl +share/examples/bioperl/blast/parse_positions.pl +share/examples/bioperl/blast/print_blasts.pl +share/examples/bioperl/blast/retrieve_blast.pl +share/examples/bioperl/blast/run_blast_remote.pl +share/examples/bioperl/blosum62.bla +share/examples/bioperl/change_gene.pl +share/examples/bioperl/clustalw.pl +share/examples/bioperl/getGenBank.pl +share/examples/bioperl/gon250.bla +share/examples/bioperl/gsequence +share/examples/bioperl/hitdisplay.pl +share/examples/bioperl/psw.pl +share/examples/bioperl/restriction.pl +share/examples/bioperl/rev_and_trans.pl +share/examples/bioperl/seq_pattern.pl +share/examples/bioperl/simplealign.pl +share/examples/bioperl/standaloneblast.pl +share/examples/bioperl/test-genscan.pl +share/examples/bioperl/root_object/Outer.pm +share/examples/bioperl/root_object/Bar.pm +share/examples/bioperl/root_object/Foo.pm +share/examples/bioperl/root_object/vector/Person.pm +share/examples/bioperl/root_object/vector/PersonManager.pm +share/examples/bioperl/root_object/vector/vector.out +share/examples/bioperl/root_object/vector/vector.pl +share/examples/bioperl/root_object/destroy.pl +share/examples/bioperl/root_object/error.out +share/examples/bioperl/root_object/error.pl +share/examples/bioperl/root_object/filehandle.out +share/examples/bioperl/root_object/filehandle.pl +share/examples/bioperl/root_object/io.out +share/examples/bioperl/root_object/io.pl +share/examples/bioperl/root_object/read.pl +share/examples/bioperl/root_object/read.test +share/examples/bioperl/root_object/read.test2 +share/examples/bioperl/root_object/read.test3 +share/examples/bioperl/root_object/utilities.pl +share/examples/bioperl/seq/seq.fasta.gz +share/examples/bioperl/seq/id.list +share/examples/bioperl/seq/seq1.fasta +share/examples/bioperl/seq/seq2.fasta +share/examples/bioperl/seq/seqs1.pl +share/examples/bioperl/seq/seqs2.pl +share/examples/bioperl/seq/seqs3.pl +share/examples/bioperl/seq/seqtools.pl +@dirrm share/examples/bioperl/seq +@dirrm share/examples/bioperl/root_object/vector +@dirrm share/examples/bioperl/root_object +@dirrm share/examples/bioperl/blast/seq +@dirrm share/examples/bioperl/blast/out +@dirrm share/examples/bioperl/blast +@dirrm share/examples/bioperl diff --git a/biology/bioperl/pkg/DESCR b/biology/bioperl/pkg/DESCR deleted file mode 100644 index 8c86b48648d..00000000000 --- a/biology/bioperl/pkg/DESCR +++ /dev/null @@ -1,11 +0,0 @@ - The Bioperl project is a coordinated effort to collect computational -methods routinely used in bioinformatics into a set of standard -CPAN-style, well-documented, and freely available Perl modules. Perl -provides unparalleled support for many tasks common in bioinformatics -yet there are no standard Perl modules for biology. Bioperl hopes to -help fill this void. - - Bioperl modules and source code will always be freely available -under the same terms as Perl itself. The Bioperl project is open to -all and we invite suggestions and participation from the larger -bioinformatics community. diff --git a/biology/bioperl/pkg/PLIST b/biology/bioperl/pkg/PLIST deleted file mode 100644 index 99571fe9ec6..00000000000 --- a/biology/bioperl/pkg/PLIST +++ /dev/null @@ -1,81 +0,0 @@ -@comment $NetBSD: PLIST,v 1.3 2001/04/05 21:48:41 jtb Exp $ -share/examples/bioperl/blast/out/blastn.2.gz -share/examples/bioperl/blast/out/blastn.2.wu.gz -share/examples/bioperl/blast/out/blastp.1.gcg.gz -share/examples/bioperl/blast/out/blastp.1.gz -share/examples/bioperl/blast/out/blastp.2.gz -share/examples/bioperl/blast/out/blastp.2.nogap.gz -share/examples/bioperl/blast/out/blastp.2.wu -share/examples/bioperl/blast/out/blastp.205.gz -share/examples/bioperl/blast/out/blastp.2a.gz -share/examples/bioperl/blast/out/blastp.2b.gz -share/examples/bioperl/blast/out/blastp.email.html.gz -share/examples/bioperl/blast/out/blastx.2 -share/examples/bioperl/blast/out/blastx.2.email.gz -share/examples/bioperl/blast/out/blastx.208.gz -share/examples/bioperl/blast/out/tblastn.206.out.gz -share/examples/bioperl/blast/seq/acc1.dna.fasta -share/examples/bioperl/blast/seq/seqs.fasta -share/examples/bioperl/blast/seq/yal011w.dna.fasta -share/examples/bioperl/blast/seq/yel009c.fasta -share/examples/bioperl/blast/seq/ymr284w.fasta -share/examples/bioperl/blast/blast_config.pl -share/examples/bioperl/blast/blast_seq.pl -share/examples/bioperl/blast/example.table1 -share/examples/bioperl/blast/example.table2 -share/examples/bioperl/blast/html.pl -share/examples/bioperl/blast/parse_blast.pl -share/examples/bioperl/blast/parse_blast2.pl -share/examples/bioperl/blast/parse_multi.pl -share/examples/bioperl/blast/parse_positions.pl -share/examples/bioperl/blast/print_blasts.pl -share/examples/bioperl/blast/retrieve_blast.pl -share/examples/bioperl/blast/run_blast_remote.pl -share/examples/bioperl/blosum62.bla -share/examples/bioperl/change_gene.pl -share/examples/bioperl/clustalw.pl -share/examples/bioperl/getGenBank.pl -share/examples/bioperl/gon250.bla -share/examples/bioperl/gsequence -share/examples/bioperl/hitdisplay.pl -share/examples/bioperl/psw.pl -share/examples/bioperl/restriction.pl -share/examples/bioperl/rev_and_trans.pl -share/examples/bioperl/seq_pattern.pl -share/examples/bioperl/simplealign.pl -share/examples/bioperl/standaloneblast.pl -share/examples/bioperl/test-genscan.pl -share/examples/bioperl/root_object/Outer.pm -share/examples/bioperl/root_object/Bar.pm -share/examples/bioperl/root_object/Foo.pm -share/examples/bioperl/root_object/vector/Person.pm -share/examples/bioperl/root_object/vector/PersonManager.pm -share/examples/bioperl/root_object/vector/vector.out -share/examples/bioperl/root_object/vector/vector.pl -share/examples/bioperl/root_object/destroy.pl -share/examples/bioperl/root_object/error.out -share/examples/bioperl/root_object/error.pl -share/examples/bioperl/root_object/filehandle.out -share/examples/bioperl/root_object/filehandle.pl -share/examples/bioperl/root_object/io.out -share/examples/bioperl/root_object/io.pl -share/examples/bioperl/root_object/read.pl -share/examples/bioperl/root_object/read.test -share/examples/bioperl/root_object/read.test2 -share/examples/bioperl/root_object/read.test3 -share/examples/bioperl/root_object/utilities.pl -share/examples/bioperl/seq/seq.fasta.gz -share/examples/bioperl/seq/id.list -share/examples/bioperl/seq/seq1.fasta -share/examples/bioperl/seq/seq2.fasta -share/examples/bioperl/seq/seqs1.pl -share/examples/bioperl/seq/seqs2.pl -share/examples/bioperl/seq/seqs3.pl -share/examples/bioperl/seq/seqtools.pl -@dirrm share/examples/bioperl/seq -@dirrm share/examples/bioperl/root_object/vector -@dirrm share/examples/bioperl/root_object -@dirrm share/examples/bioperl/blast/seq -@dirrm share/examples/bioperl/blast/out -@dirrm share/examples/bioperl/blast -@dirrm share/examples/bioperl -- cgit v1.2.3