From 226d2c91210f1cff1eeaaea54f69b4b7db6e2bdf Mon Sep 17 00:00:00 2001 From: minskim Date: Sat, 5 Nov 2005 01:47:41 +0000 Subject: Import azara from pkgsrc-wip. Packaged by David Price. Azara is a suite of programs to process and view NMR data. --- biology/azara/DESCR | 1 + biology/azara/Makefile | 37 ++++++++ biology/azara/PLIST | 26 ++++++ biology/azara/distinfo | 7 ++ biology/azara/patches/patch-aa | 31 +++++++ biology/azara/patches/patch-ab | 197 +++++++++++++++++++++++++++++++++++++++++ 6 files changed, 299 insertions(+) create mode 100644 biology/azara/DESCR create mode 100644 biology/azara/Makefile create mode 100644 biology/azara/PLIST create mode 100644 biology/azara/distinfo create mode 100644 biology/azara/patches/patch-aa create mode 100644 biology/azara/patches/patch-ab (limited to 'biology') diff --git a/biology/azara/DESCR b/biology/azara/DESCR new file mode 100644 index 00000000000..0b662887d1e --- /dev/null +++ b/biology/azara/DESCR @@ -0,0 +1 @@ +Azara is a suite of programs to process and view NMR data. diff --git a/biology/azara/Makefile b/biology/azara/Makefile new file mode 100644 index 00000000000..e0470a55c82 --- /dev/null +++ b/biology/azara/Makefile @@ -0,0 +1,37 @@ +# $NetBSD: Makefile,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $ +# + +DISTNAME= azara-2.7-src +PKGNAME= azara-2.7 +CATEGORIES= biology +MASTER_SITES= ftp://www.bio.cam.ac.uk/pub/azara/ + +MAINTAINER= mchittur@cs.nmsu.edu +HOMEPAGE= http://www.bio.cam.ac.uk/azara/ +COMMENT= Programs to process and view NMR data + +WRKSRC= ${WRKDIR}/azara-2.7 + +MAKEFILE= makefile + +do-install: +.for PROG in azara \ + bin2asc \ + combine connect contours \ + deflate \ + extract \ + float2int \ + int2float \ + look_at look_byte look_for \ + mat2par \ + par2mat peak_find peak_fit plot1 plot2 process project \ + reflate \ + slides swap \ + unblock viewer + ${CP} ${WRKSRC}/bin/${PROG} ${PREFIX}/bin +.endfor + +.include "../../graphics/glut/buildlink3.mk" +.include "../../mk/motif.buildlink3.mk" +.include "../../mk/x11.buildlink3.mk" +.include "../../mk/bsd.pkg.mk" diff --git a/biology/azara/PLIST b/biology/azara/PLIST new file mode 100644 index 00000000000..1573221802e --- /dev/null +++ b/biology/azara/PLIST @@ -0,0 +1,26 @@ +@comment $NetBSD: PLIST,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $ +bin/azara +bin/bin2asc +bin/combine +bin/connect +bin/contours +bin/deflate +bin/extract +bin/float2int +bin/int2float +bin/look_at +bin/look_byte +bin/look_for +bin/mat2par +bin/par2mat +bin/peak_find +bin/peak_fit +bin/plot1 +bin/plot2 +bin/process +bin/project +bin/reflate +bin/slides +bin/swap +bin/unblock +bin/viewer diff --git a/biology/azara/distinfo b/biology/azara/distinfo new file mode 100644 index 00000000000..f1eea5f9649 --- /dev/null +++ b/biology/azara/distinfo @@ -0,0 +1,7 @@ +$NetBSD: distinfo,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $ + +SHA1 (azara-2.7-src.tar.gz) = 53caa85953f700cdc4ec9ef26d2bb7d9448b77b0 +RMD160 (azara-2.7-src.tar.gz) = 2426102dbb87984f88ec1266b72d2e307484af0c +Size (azara-2.7-src.tar.gz) = 565272 bytes +SHA1 (patch-aa) = 1066c1e1b070020bbdd18439b27e15d359dd5e69 +SHA1 (patch-ab) = 46e512fba5b00cb36cd2b2d50db4919875124309 diff --git a/biology/azara/patches/patch-aa b/biology/azara/patches/patch-aa new file mode 100644 index 00000000000..f6389026444 --- /dev/null +++ b/biology/azara/patches/patch-aa @@ -0,0 +1,31 @@ +$NetBSD: patch-aa,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $ + +--- ENVIRONMENT.orig 2002-11-01 07:10:11.000000000 -0700 ++++ ENVIRONMENT +@@ -40,14 +40,14 @@ XPM_FLAG = -DUSE_XPM + XPM_LIB = -lXpm + + # X11 libraries +-X11_LIB = -lX11 -lPW ++#X11_LIB = -lX11 -lPW + # non-SGI platforms do not need PW +-#X11_LIB = -lX11 ++X11_LIB = -lX11 + # below uses shared libraries + #X11_LIB = -lX11_s -lPW + + # Motif libraries +-MOTIF_LIB = -lXm -lXt ++MOTIF_LIB = -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lXm -lXt + # below uses shared libraries + #MOTIF_LIB = -lXm_s -lXt_s + +@@ -58,7 +58,7 @@ MOTIF_LIB = -lXm -lXt + #GL_LIB_DIR = $(X11_LIB_DIR) -I/usr/local/mesa/lib + + # GL libraries +-GL_LIB = -lglut -lGLU -lGL -lXmu -lX11 -lXext ++GL_LIB = -L${X11BASE}/lib -Wl,-R${X11BASE}/lib -L${PREFIX}/lib -Wl,-R${PREFIX}/lib -lglut -lGLU -lGL -lXmu -lXi -lX11 -lXext + + # set up ENDIAN_FLAG as required + # WRITE_ENDIAN_PAR if want endianess written to par file diff --git a/biology/azara/patches/patch-ab b/biology/azara/patches/patch-ab new file mode 100644 index 00000000000..8a6bb31ce55 --- /dev/null +++ b/biology/azara/patches/patch-ab @@ -0,0 +1,197 @@ +$NetBSD: patch-ab,v 1.1.1.1 2005/11/05 01:47:41 minskim Exp $ + +--- help/makefile.orig 2002-11-01 05:27:27.000000000 -0700 ++++ help/makefile +@@ -37,97 +37,97 @@ globals: + .c.o:; $(CC) -c $(CFLAGS) $< + + hlp: +- txt2hlp azara +- txt2hlp combine +- txt2hlp components +- txt2hlp connect +- txt2hlp contours +- txt2hlp deflate +- txt2hlp extract +- txt2hlp peak_find +- txt2hlp peak_fit +- txt2hlp plot1 +- txt2hlp plot2 +- txt2hlp process +- txt2hlp project +- txt2hlp slides +- txt2hlp reflate +- txt2hlp unblock +- txt2hlp viewer +- txt2hlp plot2/baseline +- txt2hlp plot2/data +- txt2hlp plot2/extract +- txt2hlp plot2/levels +- txt2hlp plot2/object +- txt2hlp plot2/output +- txt2hlp plot2/peak +- txt2hlp plot2/peaks +- txt2hlp plot2/phase +- txt2hlp plot2/property +- txt2hlp plot2/region +- txt2hlp plot2/rowcol +- txt2hlp plot2/save +- txt2hlp plot2/tracking +- txt2hlp plot1/button +- txt2hlp plot1/data +- txt2hlp plot1/object +- txt2hlp plot1/output +- txt2hlp plot1/property +- txt2hlp plot1/region +- txt2hlp plot1/slider +- txt2hlp plot1/text ++ ./txt2hlp azara ++ ./txt2hlp combine ++ ./txt2hlp components ++ ./txt2hlp connect ++ ./txt2hlp contours ++ ./txt2hlp deflate ++ ./txt2hlp extract ++ ./txt2hlp peak_find ++ ./txt2hlp peak_fit ++ ./txt2hlp plot1 ++ ./txt2hlp plot2 ++ ./txt2hlp process ++ ./txt2hlp project ++ ./txt2hlp slides ++ ./txt2hlp reflate ++ ./txt2hlp unblock ++ ./txt2hlp viewer ++ ./txt2hlp plot2/baseline ++ ./txt2hlp plot2/data ++ ./txt2hlp plot2/extract ++ ./txt2hlp plot2/levels ++ ./txt2hlp plot2/object ++ ./txt2hlp plot2/output ++ ./txt2hlp plot2/peak ++ ./txt2hlp plot2/peaks ++ ./txt2hlp plot2/phase ++ ./txt2hlp plot2/property ++ ./txt2hlp plot2/region ++ ./txt2hlp plot2/rowcol ++ ./txt2hlp plot2/save ++ ./txt2hlp plot2/tracking ++ ./txt2hlp plot1/button ++ ./txt2hlp plot1/data ++ ./txt2hlp plot1/object ++ ./txt2hlp plot1/output ++ ./txt2hlp plot1/property ++ ./txt2hlp plot1/region ++ ./txt2hlp plot1/slider ++ ./txt2hlp plot1/text + + html: +- txt2html azara +- txt2html combine +- txt2html components +- txt2html connect +- txt2html contours +- txt2html deflate +- txt2html extract +- txt2html peak_find +- txt2html peak_fit +- txt2html plot1 +- txt2html plot2 +- txt2html process +- txt2html project +- txt2html slides +- txt2html reflate +- txt2html unblock +- txt2html viewer +- txt2html plot2/baseline +- txt2html plot2/data +- txt2html plot2/extract +- txt2html plot2/levels +- txt2html plot2/object +- txt2html plot2/output +- txt2html plot2/peak +- txt2html plot2/peaks +- txt2html plot2/phase +- txt2html plot2/property +- txt2html plot2/region +- txt2html plot2/rowcol +- txt2html plot2/save +- txt2html plot2/tracking +- txt2html plot1/button +- txt2html plot1/data +- txt2html plot1/object +- txt2html plot1/output +- txt2html plot1/property +- txt2html plot1/region +- txt2html plot1/slider +- txt2html plot1/text +- txt2html CHANGES +- txt2html INSTALL +- txt2html README-2.7 +- txt2html CHANGES-1.0-1 +- txt2html CHANGES-1.0-2 +- txt2html CHANGES-1.0-3 +- txt2html CHANGES-2.0-0 +- txt2html CHANGES-2.5-0 +- txt2html CHANGES-2.6-0 +- txt2html CHANGES-2.7-0 +- txt2html LICENSE ++ ./txt2html azara ++ ./txt2html combine ++ ./txt2html components ++ ./txt2html connect ++ ./txt2html contours ++ ./txt2html deflate ++ ./txt2html extract ++ ./txt2html peak_find ++ ./txt2html peak_fit ++ ./txt2html plot1 ++ ./txt2html plot2 ++ ./txt2html process ++ ./txt2html project ++ ./txt2html slides ++ ./txt2html reflate ++ ./txt2html unblock ++ ./txt2html viewer ++ ./txt2html plot2/baseline ++ ./txt2html plot2/data ++ ./txt2html plot2/extract ++ ./txt2html plot2/levels ++ ./txt2html plot2/object ++ ./txt2html plot2/output ++ ./txt2html plot2/peak ++ ./txt2html plot2/peaks ++ ./txt2html plot2/phase ++ ./txt2html plot2/property ++ ./txt2html plot2/region ++ ./txt2html plot2/rowcol ++ ./txt2html plot2/save ++ ./txt2html plot2/tracking ++ ./txt2html plot1/button ++ ./txt2html plot1/data ++ ./txt2html plot1/object ++ ./txt2html plot1/output ++ ./txt2html plot1/property ++ ./txt2html plot1/region ++ ./txt2html plot1/slider ++ ./txt2html plot1/text ++ ./txt2html CHANGES ++ ./txt2html INSTALL ++ ./txt2html README-2.7 ++ ./txt2html CHANGES-1.0-1 ++ ./txt2html CHANGES-1.0-2 ++ ./txt2html CHANGES-1.0-3 ++ ./txt2html CHANGES-2.0-0 ++ ./txt2html CHANGES-2.5-0 ++ ./txt2html CHANGES-2.6-0 ++ ./txt2html CHANGES-2.7-0 ++ ./txt2html LICENSE + + clean: + rm *.o +@@ -135,4 +135,4 @@ clean: + realclean: + rm *.o + rm txt2hlp +- rm txt2html ++ rM Txt2html -- cgit v1.2.3