From 4d83e79b12e614fcf317415ceed0ba0eb6dbc781 Mon Sep 17 00:00:00 2001 From: jmmv Date: Sun, 27 Mar 2005 13:08:45 +0000 Subject: Initial import of arka, version 0.11: Arka is a program that serves as a graphical interface for the programs from the GP package. Furthermore, it has some interesting functions of it's own. The main scope of the program is the manipulation and visualisation of DNA / RNA / protein sequences. This package comes from pkgsrc-wip; created by with several changes by me. --- biology/arka/DESCR | 6 ++++++ biology/arka/Makefile | 41 +++++++++++++++++++++++++++++++++++++++++ biology/arka/PLIST | 14 ++++++++++++++ biology/arka/distinfo | 7 +++++++ biology/arka/patches/patch-aa | 20 ++++++++++++++++++++ biology/arka/patches/patch-ab | 13 +++++++++++++ 6 files changed, 101 insertions(+) create mode 100644 biology/arka/DESCR create mode 100644 biology/arka/Makefile create mode 100644 biology/arka/PLIST create mode 100644 biology/arka/distinfo create mode 100644 biology/arka/patches/patch-aa create mode 100644 biology/arka/patches/patch-ab (limited to 'biology') diff --git a/biology/arka/DESCR b/biology/arka/DESCR new file mode 100644 index 00000000000..d5fa76b4423 --- /dev/null +++ b/biology/arka/DESCR @@ -0,0 +1,6 @@ +Arka is a program that serves as a graphical interface for the programs from +the GP package. + +Furthermore, it has some interesting functions of it's own. The main scope +of the program is the manipulation and visualisation of DNA / RNA / protein +sequences. diff --git a/biology/arka/Makefile b/biology/arka/Makefile new file mode 100644 index 00000000000..5774e08f39f --- /dev/null +++ b/biology/arka/Makefile @@ -0,0 +1,41 @@ +# $NetBSD: Makefile,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ +# + +DISTNAME= arka-0.11 +CATEGORIES= biology +MASTER_SITES= http://bioinformatics.org/genpak/download/ +EXTRACT_SUFX= .tgz + +MAINTAINER= hdp@cs.nmsu.edu +HOMEPAGE= http://www.bioinformatics.org/genpak/ +COMMENT= Graphic interface for the programs from the GP package + +DEPENDS+= gp-[0-9]*:../../biology/gp + +USE_DIRS+= xdg-1.1 +USE_PKGINSTALL= YES + +CONF_FILES= ${PREFIX}/share/examples/arka/arkarc ${PKG_SYSCONFDIR}/arkarc +CPPFLAGS+= -DARKA_GLOBAL=\"${PKG_SYSCONFDIR}/arkarc\" +CPPFLAGS+= -DARKA_PROGRAMS=\"${PKG_SYSCONFDIR}/arkarc\" + +INSTALLATION_DIRS= bin man/man1 + +post-build: + cd ${WRKSRC} && ${GUNZIP_CMD} arka.1.gz + +do-install: + ${INSTALL_PROGRAM} ${WRKSRC}/arka ${PREFIX}/bin + ${INSTALL_MAN} ${WRKSRC}/arka.1 ${PREFIX}/man/man1 +.for f in arka_16x16.xpm arka_32x32.xpm + ${INSTALL_DATA} ${WRKSRC}/icons/${f} ${PREFIX}/share/pixmaps +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/doc/arka +.for f in CHANGES.TXT INSTALL.TXT LICENSE.TXT README.TXT TODO.TXT + ${INSTALL_DATA} ${WRKSRC}/${f} ${PREFIX}/share/doc/arka +.endfor + ${INSTALL_DATA_DIR} ${PREFIX}/share/examples/arka + ${INSTALL_DATA} ${WRKSRC}/arkarc ${PREFIX}/share/examples/arka + +.include "../../x11/gtk/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" diff --git a/biology/arka/PLIST b/biology/arka/PLIST new file mode 100644 index 00000000000..78344143409 --- /dev/null +++ b/biology/arka/PLIST @@ -0,0 +1,14 @@ +@comment $NetBSD: PLIST,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ +bin/arka +man/man1/arka.1 +share/doc/arka/CHANGES.TXT +share/doc/arka/INSTALL.TXT +share/doc/arka/LICENSE.TXT +share/doc/arka/README.TXT +share/doc/arka/TODO.TXT +share/examples/arka/arkarc +share/pixmaps/arka_16x16.xpm +share/pixmaps/arka_32x32.xpm +@comment in xdg-dirs: @dirrm share/pixmaps +@dirrm share/examples/arka +@dirrm share/doc/arka diff --git a/biology/arka/distinfo b/biology/arka/distinfo new file mode 100644 index 00000000000..9245737244e --- /dev/null +++ b/biology/arka/distinfo @@ -0,0 +1,7 @@ +$NetBSD: distinfo,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ + +SHA1 (arka-0.11.tgz) = 7b1e373cb7e74a70da8c2c423dd6d7f3fecd6960 +RMD160 (arka-0.11.tgz) = 203d155b292cd34cd00f36b4162756081f03a6fc +Size (arka-0.11.tgz) = 280123 bytes +SHA1 (patch-aa) = 97321d794aa8dbe525ac50eb8f2409572485aa56 +SHA1 (patch-ab) = 935e3100a86cc6b43ff62a202f6337765a003c6a diff --git a/biology/arka/patches/patch-aa b/biology/arka/patches/patch-aa new file mode 100644 index 00000000000..736b206756d --- /dev/null +++ b/biology/arka/patches/patch-aa @@ -0,0 +1,20 @@ +$NetBSD: patch-aa,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ + +--- src/Makefile.orig 2001-05-09 22:28:41.000000000 +0200 ++++ src/Makefile +@@ -1,5 +1,5 @@ + CC=gcc +-CFLAGS=`gtk-config --cflags` -Wall ++CFLAGS+=$(CPPFLAGS) `gtk-config --cflags` + + objects = komunikat.o main.o file.o interface.o genpak.o rcfile.o \ + graph.o graph3d.o help.o programs.o options.o misc.o seqed.o search.o \ +@@ -10,7 +10,7 @@ all: arka + mv arka .. + + arka: $(objects) +- gcc -o arka $(objects) `gtk-config --libs` -lm ++ gcc $(LDFLAGS) -o arka $(objects) `gtk-config --libs` -lm + + $(objects): main.h + diff --git a/biology/arka/patches/patch-ab b/biology/arka/patches/patch-ab new file mode 100644 index 00000000000..0b29500a3ab --- /dev/null +++ b/biology/arka/patches/patch-ab @@ -0,0 +1,13 @@ +$NetBSD: patch-ab,v 1.1.1.1 2005/03/27 13:08:45 jmmv Exp $ + +--- src/options.c.orig 2001-05-04 15:36:12.000000000 +0200 ++++ src/options.c +@@ -50,7 +50,7 @@ int options_initialize(opt_s *opt) { + opt->command_history_size = 20 ; + opt->file_history_size = 5 ; + +- opt->wdir = my_strdup(getenv("PWD")) ; ++ opt->wdir = getcwd(NULL, 0); + opt->wdir = realloc(opt->wdir, strlen(opt->wdir) + 2000) ; + strcat(opt->wdir, "/") ; + -- cgit v1.2.3