From 8118ffb8bbd1d3fac2a373bdd54b7c8a7814ae71 Mon Sep 17 00:00:00 2001 From: markd Date: Thu, 16 Jul 2020 02:22:55 +0000 Subject: R: update to 4.0.2 CHANGES IN R 4.0.0: SIGNIFICANT USER-VISIBLE CHANGES: * Packages need to be (re-)installed under this version (4.0.0) of R. * matrix objects now also inherit from class "array", so e.g., class(diag(1)) is c("matrix", "array"). This invalidates code incorrectly assuming that class(matrix_obj)) has length one. S3 methods for class "array" are now dispatched for matrix objects. * There is a new syntax for specifying _raw_ character constants similar to the one used in C++: r"(...)" with ... any character sequence not containing the sequence )". This makes it easier to write strings that contain backslashes or both single and double quotes. For more details see ?Quotes. * R now uses a stringsAsFactors = FALSE default, and hence by default no longer converts strings to factors in calls to data.frame() and read.table(). A large number of packages relied on the previous behaviour and so have needed/will need updating. * The plot() S3 generic function is now in package base rather than package graphics, as it is reasonable to have methods that do not use the graphics package. The generic is currently re-exported from the graphics namespace to allow packages importing it from there to continue working, but this may change in future. Packages which define S4 generics for plot() should be re-installed and package code using such generics from other packages needs to ensure that they are imported rather than rely on their being looked for on the search path (as in a namespace, the base namespace has precedence over the search path). See ${PREFIX}/lib/R/doc/NEWS for full changes. --- math/R/Makefile | 9 ++++----- math/R/PLIST | 29 +++++++++++++++++++++-------- math/R/distinfo | 10 +++++----- 3 files changed, 30 insertions(+), 18 deletions(-) (limited to 'math/R') diff --git a/math/R/Makefile b/math/R/Makefile index 9416876d8f6..23c3bb0ed3e 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -1,9 +1,8 @@ -# $NetBSD: Makefile,v 1.214 2020/05/22 10:56:20 adam Exp $ +# $NetBSD: Makefile,v 1.215 2020/07/16 02:22:55 markd Exp $ -DISTNAME= R-3.6.1 -PKGREVISION= 7 +DISTNAME= R-4.0.2 CATEGORIES= math -MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-3/} +MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-4/} MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= https://www.R-project.org/ @@ -160,7 +159,7 @@ fix-darwin-install-name: .include "../../devel/gettext-lib/buildlink3.mk" .include "../../devel/glib2/buildlink3.mk" .include "../../devel/pango/buildlink3.mk" -.include "../../devel/pcre/buildlink3.mk" +.include "../../devel/pcre2/buildlink3.mk" # uses callback interface .include "../../devel/readline/buildlink3.mk" .include "../../devel/zlib/buildlink3.mk" diff --git a/math/R/PLIST b/math/R/PLIST index 597bb84c116..55250153162 100644 --- a/math/R/PLIST +++ b/math/R/PLIST @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.32 2019/06/09 13:39:12 wen Exp $ +@comment $NetBSD: PLIST,v 1.33 2020/07/16 02:22:55 markd Exp $ bin/R bin/Rscript info/R-FAQ.info.gz @@ -46,11 +46,15 @@ lib/R/doc/NEWS lib/R/doc/NEWS.0 lib/R/doc/NEWS.1 lib/R/doc/NEWS.2 +lib/R/doc/NEWS.2.rds +lib/R/doc/NEWS.3 +lib/R/doc/NEWS.3.rds lib/R/doc/NEWS.pdf lib/R/doc/NEWS.rds lib/R/doc/RESOURCES lib/R/doc/THANKS lib/R/doc/html/NEWS.2.html +lib/R/doc/html/NEWS.3.html lib/R/doc/html/NEWS.html lib/R/doc/html/R.css lib/R/doc/html/Rlogo.pdf @@ -152,6 +156,7 @@ lib/R/library/KernSmooth/libs/KernSmooth.so lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/fr/LC_MESSAGES/R-KernSmooth.mo +lib/R/library/KernSmooth/po/it/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/ko/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/pl/LC_MESSAGES/R-KernSmooth.mo lib/R/library/MASS/CITATION @@ -183,6 +188,7 @@ lib/R/library/MASS/libs/MASS.so lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/fr/LC_MESSAGES/R-MASS.mo +lib/R/library/MASS/po/it/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/ko/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/pl/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/scripts/ch01.R @@ -331,6 +337,7 @@ lib/R/library/boot/html/R.css lib/R/library/boot/po/de/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo +lib/R/library/boot/po/it/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/ko/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/pl/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/ru/LC_MESSAGES/R-boot.mo @@ -359,6 +366,7 @@ lib/R/library/class/libs/class.so lib/R/library/class/po/de/LC_MESSAGES/R-class.mo lib/R/library/class/po/en@quot/LC_MESSAGES/R-class.mo lib/R/library/class/po/fr/LC_MESSAGES/R-class.mo +lib/R/library/class/po/it/LC_MESSAGES/R-class.mo lib/R/library/class/po/ko/LC_MESSAGES/R-class.mo lib/R/library/class/po/pl/LC_MESSAGES/R-class.mo lib/R/library/cluster/CITATION @@ -487,6 +495,8 @@ lib/R/library/foreign/po/en@quot/LC_MESSAGES/R-foreign.mo lib/R/library/foreign/po/en@quot/LC_MESSAGES/foreign.mo lib/R/library/foreign/po/fr/LC_MESSAGES/R-foreign.mo lib/R/library/foreign/po/fr/LC_MESSAGES/foreign.mo +lib/R/library/foreign/po/it/LC_MESSAGES/R-foreign.mo +lib/R/library/foreign/po/it/LC_MESSAGES/foreign.mo lib/R/library/foreign/po/pl/LC_MESSAGES/R-foreign.mo lib/R/library/foreign/po/pl/LC_MESSAGES/foreign.mo lib/R/library/grDevices/DESCRIPTION @@ -858,6 +868,7 @@ lib/R/library/nnet/libs/nnet.so lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo +lib/R/library/nnet/po/it/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/ko/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/pl/LC_MESSAGES/R-nnet.mo lib/R/library/parallel/DESCRIPTION @@ -953,6 +964,7 @@ lib/R/library/spatial/libs/spatial.so lib/R/library/spatial/po/de/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/en@quot/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/fr/LC_MESSAGES/R-spatial.mo +lib/R/library/spatial/po/it/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/ko/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/pl/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/ppdata/agter.dat @@ -1068,6 +1080,9 @@ lib/R/library/survival/data/Rdata.rdx lib/R/library/survival/doc/adjcurve.R lib/R/library/survival/doc/adjcurve.Rnw lib/R/library/survival/doc/adjcurve.pdf +lib/R/library/survival/doc/approximate.R +lib/R/library/survival/doc/approximate.Rnw +lib/R/library/survival/doc/approximate.pdf lib/R/library/survival/doc/compete.R lib/R/library/survival/doc/compete.Rnw lib/R/library/survival/doc/compete.pdf @@ -1075,21 +1090,19 @@ lib/R/library/survival/doc/concordance.R lib/R/library/survival/doc/concordance.Rnw lib/R/library/survival/doc/concordance.pdf lib/R/library/survival/doc/index.html -lib/R/library/survival/doc/multi.R lib/R/library/survival/doc/multi.Rnw lib/R/library/survival/doc/multi.pdf +lib/R/library/survival/doc/other.Rnw +lib/R/library/survival/doc/other.pdf lib/R/library/survival/doc/population.R lib/R/library/survival/doc/population.Rnw lib/R/library/survival/doc/population.pdf -lib/R/library/survival/doc/survival.R -lib/R/library/survival/doc/survival.Rnw -lib/R/library/survival/doc/survival.pdf lib/R/library/survival/doc/splines.R lib/R/library/survival/doc/splines.Rnw lib/R/library/survival/doc/splines.pdf -lib/R/library/survival/doc/tests.R -lib/R/library/survival/doc/tests.Rnw -lib/R/library/survival/doc/tests.pdf +lib/R/library/survival/doc/survival.R +lib/R/library/survival/doc/survival.Rnw +lib/R/library/survival/doc/survival.pdf lib/R/library/survival/doc/tiedtimes.R lib/R/library/survival/doc/tiedtimes.Rnw lib/R/library/survival/doc/tiedtimes.pdf diff --git a/math/R/distinfo b/math/R/distinfo index b8bbc5db377..af6ec1fee00 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1,9 +1,9 @@ -$NetBSD: distinfo,v 1.85 2019/08/14 14:36:59 wen Exp $ +$NetBSD: distinfo,v 1.86 2020/07/16 02:22:55 markd Exp $ -SHA1 (R-3.6.1.tar.gz) = 0041c025561b5622e3dc88cdedf82334620cd3c2 -RMD160 (R-3.6.1.tar.gz) = 0944f67117372acf342251c988d83b83839deccf -SHA512 (R-3.6.1.tar.gz) = fae7d114437c4b5d10fcb2a4265acd707ad2a4810eeb7c11e25caca1d85093a1495c2e13457b4894c1508830ec1b2be95379b7d54007cf3e574c2a9eea28ef80 -Size (R-3.6.1.tar.gz) = 30463021 bytes +SHA1 (R-4.0.2.tar.gz) = ee79a57730ed4786c0d6a05bd050d52a5d0290c1 +RMD160 (R-4.0.2.tar.gz) = a323d61573a6fc46a7ce80135348578f0e7b347d +SHA512 (R-4.0.2.tar.gz) = b7330613ee9795f54cde3dd9f7509be83d9156fb8577c17179727ee01450db27704249f68bd48e0331e2df09c2d9833d8bb019c4f9ce9ba669df74650ff2e842 +Size (R-4.0.2.tar.gz) = 33191186 bytes SHA1 (patch-configure.ac) = 2732e3e0a39ee64ae4cba5c476f4754ecbd14942 SHA1 (patch-m4_R.m4) = 704d5514e10adf0b5217bb71b06f44a612eca6e0 SHA1 (patch-m4_cairo.m4) = a0c4ec68d7d6d3a73a2a24481d0dee8c192bf154 -- cgit v1.2.3