From f7f23342a1fddeaec4eee4f0d0d11b47b135e32a Mon Sep 17 00:00:00 2001 From: adam Date: Wed, 1 Jul 2020 16:03:59 +0000 Subject: py-arviz: updated to 0.9.0 v0.9.0: Highlights loo-pit KDE and HDI were improved html_repr of InferenceData objects for jupyter notebooks Support for PyJAGS from_pymc3 automatically retrieves coords and dims from model context plot_trace now supports multiple aesthetics to identify chain and variable shape and supports matplotlib aliases plot_hdi can now take already computed HDI values Deprecations from_pymc3 without a model context available raises aFutureWarning and will be deprecated in a future version In plot_trace, chain_prop and compact_prop as tuples will now raise a FutureWarning hdi with 2d data raises a FutureWarning --- math/py-arviz/Makefile | 10 +-- math/py-arviz/PLIST | 177 ++++++++++++++++++++++++++++++------------------- math/py-arviz/distinfo | 10 +-- 3 files changed, 120 insertions(+), 77 deletions(-) (limited to 'math') diff --git a/math/py-arviz/Makefile b/math/py-arviz/Makefile index f92838dadd7..5b17fcfe4b1 100644 --- a/math/py-arviz/Makefile +++ b/math/py-arviz/Makefile @@ -1,8 +1,8 @@ -# $NetBSD: Makefile,v 1.3 2020/02/16 03:02:15 minskim Exp $ +# $NetBSD: Makefile,v 1.4 2020/07/01 16:03:59 adam Exp $ -DISTNAME= arviz-0.6.1 +DISTNAME= arviz-0.9.0 PKGNAME= ${PYPKGPREFIX}-${DISTNAME} -CATEGORIES= math +CATEGORIES= math python MASTER_SITES= ${MASTER_SITE_PYPI:=a/arviz/} MAINTAINER= minskim@NetBSD.org @@ -18,9 +18,9 @@ DEPENDS+= ${PYPKGPREFIX}-pandas>=0.23:../../math/py-pandas DEPENDS+= ${PYPKGPREFIX}-scipy>=0.19:../../math/py-scipy DEPENDS+= ${PYPKGPREFIX}-xarray>=0.11:../../math/py-xarray -PYTHON_VERSIONS_INCOMPATIBLE= 27 - USE_LANGUAGES= # none +PYTHON_VERSIONS_INCOMPATIBLE= 27 + .include "../../lang/python/egg.mk" .include "../../mk/bsd.pkg.mk" diff --git a/math/py-arviz/PLIST b/math/py-arviz/PLIST index 6af0de18d5f..9502f250647 100644 --- a/math/py-arviz/PLIST +++ b/math/py-arviz/PLIST @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.2 2020/02/16 03:02:15 minskim Exp $ +@comment $NetBSD: PLIST,v 1.3 2020/07/01 16:03:59 adam Exp $ ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt @@ -42,6 +42,9 @@ ${PYSITELIB}/arviz/data/io_netcdf.pyo ${PYSITELIB}/arviz/data/io_numpyro.py ${PYSITELIB}/arviz/data/io_numpyro.pyc ${PYSITELIB}/arviz/data/io_numpyro.pyo +${PYSITELIB}/arviz/data/io_pyjags.py +${PYSITELIB}/arviz/data/io_pyjags.pyc +${PYSITELIB}/arviz/data/io_pyjags.pyo ${PYSITELIB}/arviz/data/io_pymc3.py ${PYSITELIB}/arviz/data/io_pymc3.pyc ${PYSITELIB}/arviz/data/io_pymc3.pyo @@ -54,6 +57,9 @@ ${PYSITELIB}/arviz/data/io_pystan.pyo ${PYSITELIB}/arviz/data/io_tfp.py ${PYSITELIB}/arviz/data/io_tfp.pyc ${PYSITELIB}/arviz/data/io_tfp.pyo +${PYSITELIB}/arviz/numeric_utils.py +${PYSITELIB}/arviz/numeric_utils.pyc +${PYSITELIB}/arviz/numeric_utils.pyo ${PYSITELIB}/arviz/plots/__init__.py ${PYSITELIB}/arviz/plots/__init__.pyc ${PYSITELIB}/arviz/plots/__init__.pyo @@ -75,6 +81,9 @@ ${PYSITELIB}/arviz/plots/backends/bokeh/compareplot.pyo ${PYSITELIB}/arviz/plots/backends/bokeh/densityplot.py ${PYSITELIB}/arviz/plots/backends/bokeh/densityplot.pyc ${PYSITELIB}/arviz/plots/backends/bokeh/densityplot.pyo +${PYSITELIB}/arviz/plots/backends/bokeh/distcomparisonplot.py +${PYSITELIB}/arviz/plots/backends/bokeh/distcomparisonplot.pyc +${PYSITELIB}/arviz/plots/backends/bokeh/distcomparisonplot.pyo ${PYSITELIB}/arviz/plots/backends/bokeh/distplot.py ${PYSITELIB}/arviz/plots/backends/bokeh/distplot.pyc ${PYSITELIB}/arviz/plots/backends/bokeh/distplot.pyo @@ -90,9 +99,9 @@ ${PYSITELIB}/arviz/plots/backends/bokeh/essplot.pyo ${PYSITELIB}/arviz/plots/backends/bokeh/forestplot.py ${PYSITELIB}/arviz/plots/backends/bokeh/forestplot.pyc ${PYSITELIB}/arviz/plots/backends/bokeh/forestplot.pyo -${PYSITELIB}/arviz/plots/backends/bokeh/hpdplot.py -${PYSITELIB}/arviz/plots/backends/bokeh/hpdplot.pyc -${PYSITELIB}/arviz/plots/backends/bokeh/hpdplot.pyo +${PYSITELIB}/arviz/plots/backends/bokeh/hdiplot.py +${PYSITELIB}/arviz/plots/backends/bokeh/hdiplot.pyc +${PYSITELIB}/arviz/plots/backends/bokeh/hdiplot.pyo ${PYSITELIB}/arviz/plots/backends/bokeh/jointplot.py ${PYSITELIB}/arviz/plots/backends/bokeh/jointplot.pyc ${PYSITELIB}/arviz/plots/backends/bokeh/jointplot.pyo @@ -141,6 +150,9 @@ ${PYSITELIB}/arviz/plots/backends/matplotlib/compareplot.pyo ${PYSITELIB}/arviz/plots/backends/matplotlib/densityplot.py ${PYSITELIB}/arviz/plots/backends/matplotlib/densityplot.pyc ${PYSITELIB}/arviz/plots/backends/matplotlib/densityplot.pyo +${PYSITELIB}/arviz/plots/backends/matplotlib/distcomparisonplot.py +${PYSITELIB}/arviz/plots/backends/matplotlib/distcomparisonplot.pyc +${PYSITELIB}/arviz/plots/backends/matplotlib/distcomparisonplot.pyo ${PYSITELIB}/arviz/plots/backends/matplotlib/distplot.py ${PYSITELIB}/arviz/plots/backends/matplotlib/distplot.pyc ${PYSITELIB}/arviz/plots/backends/matplotlib/distplot.pyo @@ -156,9 +168,9 @@ ${PYSITELIB}/arviz/plots/backends/matplotlib/essplot.pyo ${PYSITELIB}/arviz/plots/backends/matplotlib/forestplot.py ${PYSITELIB}/arviz/plots/backends/matplotlib/forestplot.pyc ${PYSITELIB}/arviz/plots/backends/matplotlib/forestplot.pyo -${PYSITELIB}/arviz/plots/backends/matplotlib/hpdplot.py -${PYSITELIB}/arviz/plots/backends/matplotlib/hpdplot.pyc -${PYSITELIB}/arviz/plots/backends/matplotlib/hpdplot.pyo +${PYSITELIB}/arviz/plots/backends/matplotlib/hdiplot.py +${PYSITELIB}/arviz/plots/backends/matplotlib/hdiplot.pyc +${PYSITELIB}/arviz/plots/backends/matplotlib/hdiplot.pyo ${PYSITELIB}/arviz/plots/backends/matplotlib/jointplot.py ${PYSITELIB}/arviz/plots/backends/matplotlib/jointplot.pyc ${PYSITELIB}/arviz/plots/backends/matplotlib/jointplot.pyo @@ -201,6 +213,9 @@ ${PYSITELIB}/arviz/plots/compareplot.pyo ${PYSITELIB}/arviz/plots/densityplot.py ${PYSITELIB}/arviz/plots/densityplot.pyc ${PYSITELIB}/arviz/plots/densityplot.pyo +${PYSITELIB}/arviz/plots/distcomparisonplot.py +${PYSITELIB}/arviz/plots/distcomparisonplot.pyc +${PYSITELIB}/arviz/plots/distcomparisonplot.pyo ${PYSITELIB}/arviz/plots/distplot.py ${PYSITELIB}/arviz/plots/distplot.pyc ${PYSITELIB}/arviz/plots/distplot.pyo @@ -216,9 +231,9 @@ ${PYSITELIB}/arviz/plots/essplot.pyo ${PYSITELIB}/arviz/plots/forestplot.py ${PYSITELIB}/arviz/plots/forestplot.pyc ${PYSITELIB}/arviz/plots/forestplot.pyo -${PYSITELIB}/arviz/plots/hpdplot.py -${PYSITELIB}/arviz/plots/hpdplot.pyc -${PYSITELIB}/arviz/plots/hpdplot.pyo +${PYSITELIB}/arviz/plots/hdiplot.py +${PYSITELIB}/arviz/plots/hdiplot.pyc +${PYSITELIB}/arviz/plots/hdiplot.pyo ${PYSITELIB}/arviz/plots/jointplot.py ${PYSITELIB}/arviz/plots/jointplot.pyc ${PYSITELIB}/arviz/plots/jointplot.pyo @@ -254,6 +269,7 @@ ${PYSITELIB}/arviz/plots/rankplot.pyc ${PYSITELIB}/arviz/plots/rankplot.pyo ${PYSITELIB}/arviz/plots/styles/arviz-colors.mplstyle ${PYSITELIB}/arviz/plots/styles/arviz-darkgrid.mplstyle +${PYSITELIB}/arviz/plots/styles/arviz-grayscale.mplstyle ${PYSITELIB}/arviz/plots/styles/arviz-white.mplstyle ${PYSITELIB}/arviz/plots/styles/arviz-whitegrid.mplstyle ${PYSITELIB}/arviz/plots/traceplot.py @@ -274,75 +290,102 @@ ${PYSITELIB}/arviz/stats/diagnostics.pyo ${PYSITELIB}/arviz/stats/stats.py ${PYSITELIB}/arviz/stats/stats.pyc ${PYSITELIB}/arviz/stats/stats.pyo +${PYSITELIB}/arviz/stats/stats_refitting.py +${PYSITELIB}/arviz/stats/stats_refitting.pyc +${PYSITELIB}/arviz/stats/stats_refitting.pyo ${PYSITELIB}/arviz/stats/stats_utils.py ${PYSITELIB}/arviz/stats/stats_utils.pyc ${PYSITELIB}/arviz/stats/stats_utils.pyo ${PYSITELIB}/arviz/tests/__init__.py ${PYSITELIB}/arviz/tests/__init__.pyc ${PYSITELIB}/arviz/tests/__init__.pyo +${PYSITELIB}/arviz/tests/base_tests/__init__.py +${PYSITELIB}/arviz/tests/base_tests/__init__.pyc +${PYSITELIB}/arviz/tests/base_tests/__init__.pyo +${PYSITELIB}/arviz/tests/base_tests/test_data.py +${PYSITELIB}/arviz/tests/base_tests/test_data.pyc +${PYSITELIB}/arviz/tests/base_tests/test_data.pyo +${PYSITELIB}/arviz/tests/base_tests/test_diagnostics.py +${PYSITELIB}/arviz/tests/base_tests/test_diagnostics.pyc +${PYSITELIB}/arviz/tests/base_tests/test_diagnostics.pyo +${PYSITELIB}/arviz/tests/base_tests/test_diagnostics_numba.py +${PYSITELIB}/arviz/tests/base_tests/test_diagnostics_numba.pyc +${PYSITELIB}/arviz/tests/base_tests/test_diagnostics_numba.pyo +${PYSITELIB}/arviz/tests/base_tests/test_helpers.py +${PYSITELIB}/arviz/tests/base_tests/test_helpers.pyc +${PYSITELIB}/arviz/tests/base_tests/test_helpers.pyo +${PYSITELIB}/arviz/tests/base_tests/test_plot_utils.py +${PYSITELIB}/arviz/tests/base_tests/test_plot_utils.pyc +${PYSITELIB}/arviz/tests/base_tests/test_plot_utils.pyo +${PYSITELIB}/arviz/tests/base_tests/test_plots_bokeh.py +${PYSITELIB}/arviz/tests/base_tests/test_plots_bokeh.pyc +${PYSITELIB}/arviz/tests/base_tests/test_plots_bokeh.pyo 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-${PYSITELIB}/arviz/tests/test_plots_bokeh.pyo -${PYSITELIB}/arviz/tests/test_plots_matplotlib.py -${PYSITELIB}/arviz/tests/test_plots_matplotlib.pyc -${PYSITELIB}/arviz/tests/test_plots_matplotlib.pyo -${PYSITELIB}/arviz/tests/test_rcparams.py -${PYSITELIB}/arviz/tests/test_rcparams.pyc -${PYSITELIB}/arviz/tests/test_rcparams.pyo -${PYSITELIB}/arviz/tests/test_stats.py -${PYSITELIB}/arviz/tests/test_stats.pyc -${PYSITELIB}/arviz/tests/test_stats.pyo -${PYSITELIB}/arviz/tests/test_stats_utils.py -${PYSITELIB}/arviz/tests/test_stats_utils.pyc -${PYSITELIB}/arviz/tests/test_stats_utils.pyo -${PYSITELIB}/arviz/tests/test_utils.py -${PYSITELIB}/arviz/tests/test_utils.pyc -${PYSITELIB}/arviz/tests/test_utils.pyo ${PYSITELIB}/arviz/utils.py ${PYSITELIB}/arviz/utils.pyc ${PYSITELIB}/arviz/utils.pyo -${PYSITELIB}/benchmarks/__init__.py -${PYSITELIB}/benchmarks/__init__.pyc -${PYSITELIB}/benchmarks/__init__.pyo -${PYSITELIB}/benchmarks/benchmarks.py -${PYSITELIB}/benchmarks/benchmarks.pyc -${PYSITELIB}/benchmarks/benchmarks.pyo +${PYSITELIB}/arviz/wrappers/__init__.py +${PYSITELIB}/arviz/wrappers/__init__.pyc +${PYSITELIB}/arviz/wrappers/__init__.pyo +${PYSITELIB}/arviz/wrappers/base.py +${PYSITELIB}/arviz/wrappers/base.pyc +${PYSITELIB}/arviz/wrappers/base.pyo +${PYSITELIB}/arviz/wrappers/wrap_pystan.py +${PYSITELIB}/arviz/wrappers/wrap_pystan.pyc +${PYSITELIB}/arviz/wrappers/wrap_pystan.pyo diff --git a/math/py-arviz/distinfo b/math/py-arviz/distinfo index cbccbe8f5e6..60649ae912d 100644 --- a/math/py-arviz/distinfo +++ b/math/py-arviz/distinfo @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.2 2020/02/16 03:02:15 minskim Exp $ +$NetBSD: distinfo,v 1.3 2020/07/01 16:03:59 adam Exp $ -SHA1 (arviz-0.6.1.tar.gz) = b97d3e8552b652ca0687c000c8fe695730149870 -RMD160 (arviz-0.6.1.tar.gz) = fae4cc2ba4b07766cb93d648a4d07a6c83540e61 -SHA512 (arviz-0.6.1.tar.gz) = af13aea66ec2fe7ee62168d9ec7d72e221b658bbdfe44e13f7c8ddaab5d48792fe059d15be1806d61eaf4d223659a6e4adec1786396db60fa26dec7fedcbf436 -Size (arviz-0.6.1.tar.gz) = 1363493 bytes +SHA1 (arviz-0.9.0.tar.gz) = 01268d658953ef91018c9a0fcd75d6e17577d212 +RMD160 (arviz-0.9.0.tar.gz) = 37af60260a8682c83f174b6eae1a3cc98e049599 +SHA512 (arviz-0.9.0.tar.gz) = 70bf850e2ca2e15c18f5cdf738a2021fc4281ffcef1e04121bc241d912180a5b26cff69342b950ec2321183aa93460ee4dfbaab9ad6d0481be499e6ffd12a5ac +Size (arviz-0.9.0.tar.gz) = 1435491 bytes -- cgit v1.2.3