$NetBSD: patch-aa,v 1.3 2004/08/23 14:37:04 ben Exp $

--- Makefile.in.orig	Fri Jun 13 14:05:13 2003
+++ Makefile.in
@@ -30,11 +30,12 @@ prefix      = @prefix@
 exec_prefix = @exec_prefix@
 BINDIR      = @bindir@
 MANDIR      = @mandir@
+INSTBIN     = ${BSD_INSTALL_PROGRAM}
 
 # how to install the man pages; 
 # cp is generally fine, unless you preformat your pages.
 #
-INSTMAN   = cp
+INSTMAN   = ${BSD_INSTALL_MAN}
 MANSUFFIX = 1
 
 # your compiler and compiler flags
@@ -109,10 +110,10 @@ src/libhmmer.a: 
 #          installs man pages in MANDIR/man1/  (e.g. if MANSUFFIX is 1)
 #          Creates these directories if they don't exist.
 install: 
-	mkdir -p ${BINDIR}
-	-mkdir -p ${MANDIR}/man${MANSUFFIX}
+	${MKDIR} ${BINDIR}
+	-${MKDIR} ${MANDIR}/man${MANSUFFIX}
 	for file in $(PROGS) $(PVMPROGS); do\
-	   cp src/$$file $(BINDIR)/;\
+	   $(INSTBIN) src/$$file $(BINDIR)/;\
 	done
 	-for file in hmmer $(PROGS); do\
 	   $(INSTMAN) documentation/man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\
@@ -133,7 +134,7 @@ uninstall: 
 #          subdir, remove everything but binaries and Makefiles.
 #
 bindist:
-	mkdir binaries
+	${MKDIR} binaries
 	for prog in $(PROGS); do\
 	   (cd binaries; ln -s ../src/$$prog .);\
 	done
@@ -205,7 +206,7 @@ dist:	
 	# in testsuite. 
 	#
 	cp ssdk/sqc ${BASENAME}-${RELEASE}/testsuite/
-	mkdir ${BASENAME}-${RELEASE}/ssdk
+	${MKDIR} ${BASENAME}-${RELEASE}/ssdk
 	cp ssdk/rmanprocess.pl ${BASENAME}-${RELEASE}/ssdk/
 	# 
 	# Make the configure scripts from configure.ac
@@ -293,7 +294,7 @@ dist:	
 #               directory.
 #
 ftpdist:
-	mkdir -p ${FTPDIR}
+	${MKDIR} ${FTPDIR}
 	cp -f hmmer-$(RELEASE)/00README         ${FTPDIR}
 	cp -f hmmer-$(RELEASE)/COPYRIGHT        ${FTPDIR}
 	cp -f hmmer-$(RELEASE)/INSTALL          ${FTPDIR}