.\" $NetBSD: R2pkg.8,v 1.4 2017/07/18 18:44:06 wiz Exp $ .\" .\" Copyright (c) 2014,2015,2016,2017 .\" Brook Milligan. All rights reserved. .\" .\" Redistribution and use in source and binary forms, with or without .\" modification, are permitted provided that the following conditions .\" are met: .\" 1. Redistributions of source code must retain the above copyright .\" notice, this list of conditions and the following disclaimer. .\" 2. Redistributions in binary form must reproduce the above copyright .\" notice, this list of conditions and the following disclaimer in the .\" documentation and/or other materials provided with the distribution. .\" 3. Neither the name of the author nor the names of any contributors .\" may be used to endorse or promote products derived from this software .\" without specific prior written permission. .\" .\" THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND .\" ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE .\" IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE .\" ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE .\" FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL .\" DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS .\" OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) .\" HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT .\" LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY .\" OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF .\" SUCH DAMAGE. .\" .\" .Dd February 23, 2017 .Dt R2PKG 8 .Os .Sh NAME .Nm R2pkg .Nd create a pkgsrc package for an R package .Sh SYNOPSIS .Nm .Op Fl DehqruVv .Op Fl E Ar editor .Op Fl R Ar dependency_file .Op Ar package .Sh DESCRIPTION .Nm takes the name of an R .Ar package that should be turned into a .Xr pkgsrc 7 package in the current directory. The generated package includes a .Pa Makefile and a mostly complete set of files to get the package going. However, the files should be reviewed and perhaps adjusted manually after .Nm has finished its job. To help with this, the original versions of files created by .Nm are preserved for reference. .Pp .Nm is intended to help the process of creating a package but is not intended to fly on autopilot. .Pp The .Pa Makefile contains all of the variables required for an R package, with information being taken from the package's .Pa DESCRIPTION file on CRAN, which is automatically fetched by .Nm . Likewise, the .Pa DESCR file is populated with information from the same file. After .Pa Makefile and .Pa DESCR are completed, .Nm fetches the package and computes its checksum via the .Ic makesum target. .Pp If the user does not supply the .Ar package on the command line, then .Nm will prompt for it. .Pp The following options are available: .Bl -tag -width indent .It Fl D Write the package's description into .Pa DESCRIPTION . This may be useful for verifying the information obtained from CRAN. However, this file must be removed as it is not part of a .Xr pkgsrc 7 package. .It Fl E Ar editor Use .Ar editor instead of the user's default editor. .It Fl e Do not edit Makefile and DESCR. .It Fl h Produce a short help message. .It Fl q Do not produce status messages along the way. .It Fl R Ar dependency_file Process dependency packages recursively using .Pa dependency_file to record dependency information. This option is intended for internal use only to implement recursion over dependencies. Instead, the .Fl r option should be used to select recursion. .It Fl r Process dependency packages recursively. A .Pa depends file is created that lists the dependencies in .Xr tsort 1 order. This is likely the best order for testing the resulting dependency packages. In particular, a useful strategy for creating packages recursively is to (i) run .Nm with the .Fl r option, (ii) fix all the leaf packages, (iii) rerun .Nm with the .Fl r option, and (iv) continue until all packages are created. Repeating runs of .Nm once the leaf dependencies are moved into the correct categories will allow the program to capture the correct dependencies in each .Pa Makefile . .It Fl u Update the .Xr pkgsrc 7 package. .Nm must be run in an R package directory, which is assumed to be named as .Pa R-package . The name of the package to be updated will be taken from the directory name and need not be given on the command line. .It Fl V Print the version. .It Fl v Generate verbose output. This may be repeated to increase the verbosity. .El .Sh ENVIRONMENT The following environment variables affect the execution of .Nm : .Bl -tag -width BLOCKSIZE .It Ev PKGEDITOR , EDITOR Editor used for editing .Pa Makefile and .Pa DESCR . .It Ev CRAN_URL The URL to the CRAN mirror for downloading the package's DESCRIPTION file. By default, .Pa ftp://cran.r-project.org . .El .Sh EXAMPLES Use the following commands to create a .Xr pkgsrc 7 package for the R package .Ar foo : .Dl cd pkgsrc/math .Dl mkdir R-foo .Dl cd R-foo .Dl R2pkg foo Remember to test the resulting package and remove any extra files created by .Nm . .Sh SEE ALSO .Xr pkgsrc 7 .Sh AUTHORS .Nm was written by .An Brook Milligan Aq Mt brook@NetBSD.org . .Sh BUGS .Nm does not create a finished package; instead, it facilitates the task. However, the resulting files must be reviewed and possibly edited by hand. Although dependencies are included in the generated .Pa Makefile , they are not fully analyzed and likely have incorrect category information. Packages created recursively for dependencies are placed in a newly created, nonstandard .Pa pkgsrc/R category directory and must be moved to appropriate category directories within .Xr pkgsrc 7 and checked for correctness.