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# $NetBSD: Makefile,v 1.7 2022/03/17 16:01:11 bacon Exp $
DISTNAME= hisat2-2.2.1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_GITHUB:=DaehwanKimLab/}
GITHUB_TAG= v${PKGVERSION_NOREV}
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= https://ccb.jhu.edu/software/hisat2/index.shtml
COMMENT= Alignment program for mapping next-generation sequencing reads
LICENSE= gnu-gpl-v3
# 64-bit code, some assembly language
ONLY_FOR_PLATFORM= *-*-x86_64
USE_LANGUAGES= c c++
USE_TOOLS+= bash gmake perl
REPLACE_BASH= scripts/*.sh
REPLACE_PERL= hisat2 scripts/*.sh scripts/*.pl scripts/*.py
REPLACE_PYTHON= *.py scripts/*.py hisat2-build hisat2-inspect
PTHREAD_AUTO_VARS= yes
WRKSRC= ${WRKDIR}/hisat2-2.2.1
# Unbreak #include <version> on case-insensitive file systems
post-patch:
${MV} ${WRKSRC}/VERSION ${WRKSRC}/HISAT2_VERSION
.include "../../lang/python/application.mk"
.include "../../mk/pthread.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
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