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# $NetBSD: Makefile,v 1.20 2012/10/03 21:53:59 wiz Exp $
#
DISTNAME= MUMmer3.20
PKGNAME= mummer-3.20
PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=mummer/}
MAINTAINER= hdp@cs.nmsu.edu
HOMEPAGE= http://mummer.sourceforge.net/
COMMENT= System for aligning whole genome sequences
WRKSRC= ${WRKDIR}/${DISTNAME}
USE_TOOLS+= csh:run gmake perl:run pax
USE_LANGUAGES= c c++
MAKE_ENV+= SH=${SH:Q}
MAKE_ENV+= PERL=${PERL5:Q}
MAKE_ENV+= CSH=${TOOLS_PATH.csh:Q}
INSTALLATION_DIRS= bin share/doc/mummer share/mummer
do-install:
.for p in annotate combineMUMs delta-filter gaps mgaps mummer \
repeat-match show-aligns show-coords show-snps show-tiling
${INSTALL_PROGRAM} ${WRKSRC}/${p} ${DESTDIR}${PREFIX}/bin
.endfor
.for p in postnuc postpro prenuc prepro
${INSTALL_PROGRAM} ${WRKSRC}/aux_bin/${p} ${DESTDIR}${PREFIX}/bin
.endfor
.for f in run-mummer1 run-mummer3 nucmer promer exact-tandems \
mapview mummerplot nucmer2xfig dnadiff
${INSTALL_SCRIPT} ${WRKSRC}/${f} ${DESTDIR}${PREFIX}/share/mummer
.endfor
cd ${WRKSRC}/docs && pax -wr -s ',^Makefile$$,,' * \
${DESTDIR}${PREFIX}/share/doc/mummer
.include "../../mk/bsd.pkg.mk"
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