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# $NetBSD: Makefile,v 1.2 2019/04/25 07:32:37 maya Exp $
DISTNAME= stacks-2.2
PKGREVISION= 1
CATEGORIES= biology
MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/
MAINTAINER= bacon@NetBSD.org
HOMEPAGE= http://catchenlab.life.illinois.edu/stacks/
COMMENT= Software pipeline for building loci from short-read sequences
LICENSE= gnu-gpl-v2
USE_LANGUAGES= c c++14
GCC_REQD+= 4.9
USE_TOOLS+= bash perl:run
GNU_CONFIGURE= yes
REPLACE_BASH= scripts/stacks-integrate-alignments scripts/stacks-gdb
REPLACE_BASH+= scripts/stacks-dist-extract
REPLACE_PERL= scripts/*.pl
REPLACE_PYTHON= scripts/*.py
CFLAGS+= -fopenmp
.include "../../lang/python/application.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
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