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$NetBSD: patch-aa,v 1.2 2005/11/03 19:52:44 rillig Exp $
--- test/testxylem.csh.orig 2001-08-18 16:31:51.000000000 -0400
+++ test/testxylem.csh 2003-09-28 17:29:21.000000000 -0400
@@ -10,13 +10,12 @@
# set default parameters
#####################################################################
set RM = rm
-set BINDIR = ../bin
# set $testset to programs to be tested.
set NUMARGS = $#argv
if ($NUMARGS == 0) then
- set TESTSET = (splitdb getloc identify getob reform ribosome shuffle\
+ set TESTSET = (splitdb getloc xyl-identify getob reform ribosome shuffle\
dbstat flat2phyl findkey fetch features)
else
set TESTSET = $1
@@ -31,7 +30,7 @@
######### splitdb #######
case splitdb:
# run the program
- $BINDIR/splitdb sample.gen temp.ano temp.wrp temp.ind
+ splitdb sample.gen temp.ano temp.wrp temp.ind
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -73,7 +72,7 @@
######### getloc #######
case getloc:
# run the program
- $BINDIR/getloc sample.nam sample.ano sample.wrp sample.ind temp.gen
+ getloc sample.nam sample.ano sample.wrp sample.ind temp.gen
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -95,10 +94,10 @@
breaksw
######### identify #######
- case identify:
+ case xyl-identify:
# run the program
egrep -n -i LOCUS sample.ano >temp.egrep
- $BINDIR/identify temp.egrep sample.ind temp.nam temp.fnd
+ xyl-identify temp.egrep sample.ind temp.nam temp.fnd
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -132,7 +131,7 @@
######### getob #######
case getob:
# run the program
- $BINDIR/getob sample.inp sample.nam sample.ano sample.wrp sample.ind\
+ getob sample.inp sample.nam sample.ano sample.wrp sample.ind\
temp.getob.msg temp.getob.out temp.getob.exp
# if successful, compare sample files with new output
@@ -175,7 +174,7 @@
######### reform #######
case reform:
# run the program
- $BINDIR/reform -g -p -c -fi <sample.aln > temp.ref
+ reform -g -p -c -fi <sample.aln > temp.ref
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -199,7 +198,7 @@
######### ribosome #######
case ribosome:
# run the program
- $BINDIR/ribosome <sample.out > temp.pep
+ ribosome <sample.out > temp.pep
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -223,7 +222,7 @@
######### prot2nuc #######
case prot2nuc:
# run the program
- $BINDIR/prot2nuc <sample.pro > temp.prot2nuc
+ prot2nuc <sample.pro > temp.prot2nuc
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -247,7 +246,7 @@
######### dbstat #######
case dbstat:
# run the program
- $BINDIR/dbstat <sample.pep > temp.dbstat
+ dbstat <sample.pep > temp.dbstat
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -272,7 +271,7 @@
case flat2phyl:
# check results for interleaved format
- $BINDIR/flat2phyl <sample.flat > temp.interleaved.phylip
+ flat2phyl <sample.flat > temp.interleaved.phylip
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -295,7 +294,7 @@
endif
# check results for sequential format
- $BINDIR/flat2phyl -s <sample.flat > temp.sequential.phylip
+ flat2phyl -s <sample.flat > temp.sequential.phylip
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -321,7 +320,7 @@
######### shuffle #######
case shuffle:
# run the program
- $BINDIR/shuffle -s3456 <sample.out > temp.shuf
+ shuffle -s3456 <sample.out > temp.shuf
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -337,7 +336,7 @@
case findkey:
# run the program
echo "LOCUS" > temp.kw
- $BINDIR/findkey -G sample.ano temp.kw temp.nam temp.fnd
+ findkey -G sample.ano temp.kw temp.nam temp.fnd
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -371,7 +370,7 @@
######### fetch #######
case fetch:
# run the program
- $BINDIR/fetch -G sample sample.nam temp.gen
+ fetch -G sample sample.nam temp.gen
# if successful, compare sample files with new output
set SUCCESS = $status
@@ -396,7 +395,7 @@
case features:
# run the program
cp sample.exp temp.exp
- $BINDIR/features -u sample -E temp.exp
+ features -u sample -E temp.exp
# if successful, compare sample files with new output
set SUCCESS = $status
|
