Imported Upstream version 60

1 files changed, 0 insertions, 105 deletions

diff --git a/test/bench/reverse-complement.go b/test/bench/reverse-complement.go
deleted file mode 100644
index baa30ffcc..000000000
--- a/test/bench/reverse-complement.go
+++ /dev/null
@@ -1,105 +0,0 @@
-/*
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-    * Redistributions of source code must retain the above copyright
-    notice, this list of conditions and the following disclaimer.
-
-    * Redistributions in binary form must reproduce the above copyright
-    notice, this list of conditions and the following disclaimer in the
-    documentation and/or other materials provided with the distribution.
-
-    * Neither the name of "The Computer Language Benchmarks Game" nor the
-    name of "The Computer Language Shootout Benchmarks" nor the names of
-    its contributors may be used to endorse or promote products derived
-    from this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
-ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
-LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
-SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
-INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
-CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
-ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
-POSSIBILITY OF SUCH DAMAGE.
-*/
-
-/* The Computer Language Benchmarks Game
- * http://shootout.alioth.debian.org/
- *
- * contributed by The Go Authors.
- */
-
-package main
-
-import (
-	"bufio"
-	"os"
-)
-
-const lineSize = 60
-
-var complement = [256]uint8{
-	'A': 'T', 'a': 'T',
-	'C': 'G', 'c': 'G',
-	'G': 'C', 'g': 'C',
-	'T': 'A', 't': 'A',
-	'U': 'A', 'u': 'A',
-	'M': 'K', 'm': 'K',
-	'R': 'Y', 'r': 'Y',
-	'W': 'W', 'w': 'W',
-	'S': 'S', 's': 'S',
-	'Y': 'R', 'y': 'R',
-	'K': 'M', 'k': 'M',
-	'V': 'B', 'v': 'B',
-	'H': 'D', 'h': 'D',
-	'D': 'H', 'd': 'H',
-	'B': 'V', 'b': 'V',
-	'N': 'N', 'n': 'N',
-}
-
-func main() {
-	in := bufio.NewReader(os.Stdin)
-	buf := make([]byte, 1024*1024)
-	line, err := in.ReadSlice('\n')
-	for err == nil {
-		os.Stdout.Write(line)
-
-		// Accumulate reversed complement in buf[w:]
-		nchar := 0
-		w := len(buf)
-		for {
-			line, err = in.ReadSlice('\n')
-			if err != nil || line[0] == '>' {
-				break
-			}
-			line = line[0 : len(line)-1]
-			nchar += len(line)
-			if len(line)+nchar/60+128 >= w {
-				nbuf := make([]byte, len(buf)*5)
-				copy(nbuf[len(nbuf)-len(buf):], buf)
-				w += len(nbuf) - len(buf)
-				buf = nbuf
-			}
-
-			// This loop is the bottleneck.
-			for _, c := range line {
-				w--
-				buf[w] = complement[c]
-			}
-		}
-
-		// Copy down to beginning of buffer, inserting newlines.
-		// The loop left room for the newlines and 128 bytes of padding.
-		i := 0
-		for j := w; j < len(buf); j += 60 {
-			n := copy(buf[i:i+60], buf[j:])
-			buf[i+n] = '\n'
-			i += n + 1
-		}
-		os.Stdout.Write(buf[0:i])
-	}
-}