diff options
author | wiz <wiz@pkgsrc.org> | 2021-04-24 08:47:53 +0000 |
---|---|---|
committer | wiz <wiz@pkgsrc.org> | 2021-04-24 08:47:53 +0000 |
commit | 36bd8eb29b013bc2fd8620f03f97de8e3c2727df (patch) | |
tree | 1d3a68e78b125196cfe37a16ac3d452cb328fa47 | |
parent | a66b9cca58c9439fc88e1b65a7153d851c1805d6 (diff) | |
download | pkgsrc-36bd8eb29b013bc2fd8620f03f97de8e3c2727df.tar.gz |
molden: remove
Upstream website gone, the distfile was not re-distributable, and
noone had updated it since 2007.
-rw-r--r-- | doc/CHANGES-2021 | 3 | ||||
-rw-r--r-- | doc/TODO | 4 | ||||
-rw-r--r-- | misc/Makefile | 3 | ||||
-rw-r--r-- | misc/molden/DESCR | 22 | ||||
-rw-r--r-- | misc/molden/MESSAGE | 7 | ||||
-rw-r--r-- | misc/molden/Makefile | 43 | ||||
-rw-r--r-- | misc/molden/PLIST | 55 | ||||
-rw-r--r-- | misc/molden/distinfo | 8 | ||||
-rw-r--r-- | misc/molden/patches/patch-aa | 26 | ||||
-rw-r--r-- | misc/molden/patches/patch-ab | 127 |
10 files changed, 4 insertions, 294 deletions
diff --git a/doc/CHANGES-2021 b/doc/CHANGES-2021 index 9b33fbae62e..7db530ac6af 100644 --- a/doc/CHANGES-2021 +++ b/doc/CHANGES-2021 @@ -1,4 +1,4 @@ -$NetBSD: CHANGES-2021,v 1.2320 2021/04/24 08:42:48 wiz Exp $ +$NetBSD: CHANGES-2021,v 1.2321 2021/04/24 08:47:53 wiz Exp $ Changes to the packages collection and infrastructure in 2021: @@ -3657,3 +3657,4 @@ Changes to the packages collection and infrastructure in 2021: Updated chat/irssi-icb to 0.15nb7 [nia 2021-04-24] Updated chat/irssi-xmpp to 0.54nb2 [nia 2021-04-24] Removed net/radiusd-cistron [wiz 2021-04-24] + Removed misc/molden [wiz 2021-04-24] @@ -1,4 +1,4 @@ -$NetBSD: TODO,v 1.20508 2021/04/23 20:57:33 wiz Exp $ +$NetBSD: TODO,v 1.20509 2021/04/24 08:47:53 wiz Exp $ Suggested new packages ====================== @@ -1035,8 +1035,6 @@ For possible Perl packages updates, see http://www.NetBSD.org/~wiz/perl.html o mixxx-2.2.4 o modular-xorg-xquartz-1.20.9 o modular-xorg-xwayland-21.1.0 - o molden-4.8 [after which PR 40252 can be closed] - o molden-5.5 o mongo-c-driver-1.17.5.1 o mongo-tools-4.2.13 o mono-nat-1.1.0 diff --git a/misc/Makefile b/misc/Makefile index 077dbe86ae7..0a942680867 100644 --- a/misc/Makefile +++ b/misc/Makefile @@ -1,4 +1,4 @@ -# $NetBSD: Makefile,v 1.547 2021/04/07 19:42:25 markd Exp $ +# $NetBSD: Makefile,v 1.548 2021/04/24 08:47:53 wiz Exp $ # COMMENT= Miscellaneous utilities @@ -194,7 +194,6 @@ SUBDIR+= mime-types SUBDIR+= mirmon SUBDIR+= mkcue SUBDIR+= mmv -SUBDIR+= molden SUBDIR+= moreutils SUBDIR+= most SUBDIR+= mousetweaks diff --git a/misc/molden/DESCR b/misc/molden/DESCR deleted file mode 100644 index 5215adcc465..00000000000 --- a/misc/molden/DESCR +++ /dev/null @@ -1,22 +0,0 @@ -MOLDEN is a package for displaying molecular density. It is tuned to -the Ab Initio packages GAMESS* and GAUSSIAN. It can read all the -information it needs from a GAMESS or GAUSSIAN outputfile. In this -form it has been running on a CONVEX C-120, an APOLLO DN10000, an -IRIS 4D/70GT, a DECSTATION 5000 and a SUN, and in slightly adapted -versions on a VAX and a CRAY-YMP. It should run smoothly on most -Unix machines. See section INSTALLATION GUIDE on how to install -MOLDEN. (* The GAMESS version referred to here is the european -version maintaned by M.F. Guest et al not to be confused with the -american version maintained by M.W. Schmidt et al) - -/*************************************************************************** - Copyright (C) 1991 Gijs Schaftenaar - - Permission to use, copy this software and its documentation - for private use is hereby granted to non profit organisations. - - This software is provided "as is" without express or implied warranty. - - Please cite the author in any work based on this material. - - *************************************************************************** diff --git a/misc/molden/MESSAGE b/misc/molden/MESSAGE deleted file mode 100644 index bb1ac6e1515..00000000000 --- a/misc/molden/MESSAGE +++ /dev/null @@ -1,7 +0,0 @@ -=========================================================================== -$NetBSD: MESSAGE,v 1.4 2014/06/25 08:45:23 jperkin Exp $ - -Please register at the URL below as a Molden User. - -http://www.cmbi.ru.nl/~schaft/molden/form.html -=========================================================================== diff --git a/misc/molden/Makefile b/misc/molden/Makefile deleted file mode 100644 index b20aaf9c687..00000000000 --- a/misc/molden/Makefile +++ /dev/null @@ -1,43 +0,0 @@ -# $NetBSD: Makefile,v 1.34 2019/11/03 17:04:24 rillig Exp $ - -DISTNAME= molden4.6 -PKGNAME= ${DISTNAME:S/molden/&-/} -PKGREVISION= 3 -CATEGORIES= misc # chemistry -MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/ - -MAINTAINER= pkgsrc-users@NetBSD.org -HOMEPAGE= http://www.cmbi.ru.nl/molden/molden.html -COMMENT= Displaying MOLecular DENsity -LICENSE= molden-license - -RESTRICTED= Redistributing Molden by unregistered user is prohibited. -NO_SRC_ON_CDROM= ${RESTRICTED} -NO_BIN_ON_CDROM= ${RESTRICTED} -NO_SRC_ON_FTP= ${RESTRICTED} -NO_BIN_ON_FTP= ${RESTRICTED} - -DIST_SUBDIR= ${PKGNAME_NOREV} - -MAKE_FILE= makefile -BUILD_TARGET= molden - -USE_LANGUAGES= c fortran77 - -INSTALLATION_DIRS= bin share/molden/doc share/molden/test share/molden/utils - -do-install: - ${INSTALL_PROGRAM} ${WRKSRC}/molden ${DESTDIR}${PREFIX}/bin - for d in doc test utils ; do \ - for f in ${WRKSRC}/$${d}/* ; do \ - ${INSTALL_DATA} $${f} ${DESTDIR}${PREFIX}/share/molden/$${d} ; \ - done ; \ - done - -.include "../../mk/compiler.mk" -.if !empty(PKGSRC_COMPILER:Mclang) -CFLAGS+= -Wno-return-type -.endif - -.include "../../graphics/MesaLib/buildlink3.mk" -.include "../../mk/bsd.pkg.mk" diff --git a/misc/molden/PLIST b/misc/molden/PLIST deleted file mode 100644 index 0b703775b2a..00000000000 --- a/misc/molden/PLIST +++ /dev/null @@ -1,55 +0,0 @@ -@comment $NetBSD: PLIST,v 1.3 2009/06/14 18:07:27 joerg Exp $ -bin/molden -share/molden/doc/figures.ps.Z -share/molden/doc/manual.ps.Z -share/molden/doc/manual.txt.Z -share/molden/test/adf.molf -share/molden/test/ambfor_amber.xyz -share/molden/test/ambfor_gaff.xyz -share/molden/test/ampac.arc -share/molden/test/ampac.test -share/molden/test/bucky.xyz -share/molden/test/chemx.test -share/molden/test/complex2.out -share/molden/test/cpeptide.gro -share/molden/test/esp.test -share/molden/test/esp.txt -share/molden/test/esp.xyz -share/molden/test/fragment -share/molden/test/gamess_uk.freq -share/molden/test/gamess_uk.input -share/molden/test/gamess_uk.test1 -share/molden/test/gamess_uk.test2 -share/molden/test/gamess_us.h2o_631g_opt.out -share/molden/test/gamess_us.irc -share/molden/test/gamess_us_uhf_opt -share/molden/test/gaussian.freq -share/molden/test/gaussian.input -share/molden/test/gaussian.test -share/molden/test/jaguar.cube -share/molden/test/molden.ogl -share/molden/test/mopac.freq -share/molden/test/mopac.test -share/molden/test/pdb.test -share/molden/test/pdb.test.omap -share/molden/test/qchem.test -share/molden/test/reacpth.xyz -share/molden/test/shelx.ins -share/molden/test/surface.molf -share/molden/test/test.fdat -share/molden/test/test.mol2 -share/molden/test/test_homo.cube -share/molden/test/tinker_charmm.xyz -share/molden/test/tinker_mm3.xyz -share/molden/test/uracil.fdat -share/molden/test/uracil_gauss.out -share/molden/test/vamp.test -share/molden/utils/INFO -share/molden/utils/ch_backspace -share/molden/utils/ch_mxcon -share/molden/utils/ch_par -share/molden/utils/colors -share/molden/utils/ircextract.awk -share/molden/utils/molden -share/molden/utils/multi_vrml.csh -share/molden/utils/multi_vrml_orbitals.csh diff --git a/misc/molden/distinfo b/misc/molden/distinfo deleted file mode 100644 index 34e350b6541..00000000000 --- a/misc/molden/distinfo +++ /dev/null @@ -1,8 +0,0 @@ -$NetBSD: distinfo,v 1.11 2017/03/23 17:06:56 joerg Exp $ - -SHA1 (molden-4.6/molden4.6.tar.gz) = 83f17d2079b83cc790689485c139301407313463 -RMD160 (molden-4.6/molden4.6.tar.gz) = b75ec4c23001695044e82d9f8b8542cb45b3009c -SHA512 (molden-4.6/molden4.6.tar.gz) = 90b0569028e47ae130692c220ed1d49e270b7cce6a9e762e3e42db0c832eaa4fd70d1c51d61ca956a412ae068e8c29b36ba102a379fa80c553bf3dcef00b49e6 -Size (molden-4.6/molden4.6.tar.gz) = 2786093 bytes -SHA1 (patch-aa) = 6d56ac7e5aa940004b6758164b5eaedbf9694b3c -SHA1 (patch-ab) = a0dad736707c3228f4934e4888ae0d08cbf61338 diff --git a/misc/molden/patches/patch-aa b/misc/molden/patches/patch-aa deleted file mode 100644 index ae7b634a73d..00000000000 --- a/misc/molden/patches/patch-aa +++ /dev/null @@ -1,26 +0,0 @@ -$NetBSD: patch-aa,v 1.3 2015/03/21 19:27:56 joerg Exp $ - ---- makefile.orig 2008-06-24 13:44:16.000000000 +0000 -+++ makefile -@@ -13,8 +13,7 @@ - # Disregard compiler warnings on rdmolf.f - # - CC = cc --LIBS = -lX11 -lm --LIBSG = -L/usr/X11R6/lib -lGLU -lGL -lXmu -lX11 -lm -+LIBS = -L${X11BASE}/lib -R${X11BASE}/lib -lX11 -lm - - # Silicon Graphics - #CFLAGS = -c -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -@@ -52,10 +51,9 @@ LIBSG = -L/usr/X11R6/lib -lGLU -lGL -lXm - # with GCC4.0 or higher replace the line with: - # 'external gfortran_iargc' - # --CFLAGS = -c -I/usr/X11R6/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -+CFLAGS += -c -I${X11BASE}/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 - FC = g77 - FFLAGS = --LIBS = -L/usr/X11R6/lib -lX11 -lm - LDR = g77 - # 64 bit machines: - #LIBS = -L/usr/X11R6/lib64 -lX11 -lm diff --git a/misc/molden/patches/patch-ab b/misc/molden/patches/patch-ab deleted file mode 100644 index c91c435aea0..00000000000 --- a/misc/molden/patches/patch-ab +++ /dev/null @@ -1,127 +0,0 @@ -$NetBSD: patch-ab,v 1.2 2015/03/21 19:27:56 joerg Exp $ - ---- xwin.c.orig 2008-08-30 11:59:22.000000000 +0000 -+++ xwin.c -@@ -20,10 +20,6 @@ - #include <GL/gl.h> - #include <GL/glu.h> - #endif --#if defined(DARWIN) || defined(FREEBSD) --#else --#include <malloc.h> --#endif - #endif - - #include <stdio.h> -@@ -3360,7 +3356,7 @@ static int *ispoptm; - static int *icopth; - static int *icoptl; - static int *icoptm; --static int linkat = 0; -+static int my_linkat = 0; - - static QBOXSTRU IANZboxes[MAXAT]; - static QBOXSTRU IZboxes[MAXAT][4]; -@@ -17466,7 +17462,7 @@ int i; - if (ioniom == 1) { - int ism, isl; - -- linkat = 0; -+ my_linkat = 0; - - /* Counting the number of Link atoms between H and lower - levels*/ -@@ -17479,10 +17475,10 @@ int i; - if (ionij != 0) continue; - nconn = xyz.iconn[j*(MXCON+1)]; - for (k=1;k<=nconn;k++) { -- if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) linkat++; -+ if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) my_linkat++; - } - } -- linkat += 20000; -+ my_linkat += 20000; - *itotc = *icopth; - *imult = *ispopth; - if (CheckChargeMult()) { -@@ -17503,7 +17499,7 @@ int i; - - } else if (ioniom == 2) { - -- linkat = 0; -+ my_linkat = 0; - - /* Counting the number of Link atoms between H and - lower levels*/ -@@ -17513,10 +17509,10 @@ int i; - if(ionij != 0) continue; - nconn = xyz.iconn[j*(MXCON+1)]; - for (k=1;k<=nconn;k++) { -- if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) linkat++; -+ if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 > 0) my_linkat++; - } - } -- linkat += 20000; -+ my_linkat += 20000; - *itotc = *icopth; - *imult = *ispopth; - if (CheckChargeMult()) { -@@ -17528,7 +17524,7 @@ int i; - break; - */ - } -- linkat = 0; -+ my_linkat = 0; - - /* Counting the number of Link atoms between H+M and - lower levels*/ -@@ -17538,10 +17534,10 @@ int i; - if (ionij == 2) continue; - nconn = xyz.iconn[j*(MXCON+1)]; - for (k=1;k<=nconn;k++) { -- if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 == 2) linkat++; -+ if (xyz.ityp[xyz.iconn[j*(MXCON+1)+k]-1]/10000 == 2) my_linkat++; - } - } -- linkat += 20000; -+ my_linkat += 20000; - *itotc = *icoptm; - *imult = *ispoptm; - if (CheckChargeMult()) { -@@ -17556,7 +17552,7 @@ int i; - icopt = *icoptl+3; - ispopt = *ispoptl-1; - } -- linkat = 0; -+ my_linkat = 0; - *itotc = icopt - 3; - *imult = ispopt + 1; - *ito = itopt[jmode] + 1; -@@ -17808,10 +17804,10 @@ int CheckChargeMult() - ionil = 0; - - if (ioniom) { -- ionil = 3 - (linkat / 10000); -- linkat -= (linkat / 10000) * 10000; -+ ionil = 3 - (my_linkat / 10000); -+ my_linkat -= (my_linkat / 10000) * 10000; - } else { -- linkat = 0; -+ my_linkat = 0; - } - - if (*zmptr.ihaszm) { -@@ -17834,10 +17830,10 @@ int CheckChargeMult() - } - } - /* -- fprintf(stderr,"ionil %d ne %d itotc %d linkat %d mult %d\n", -- ionil,ne,*itotc,linkat,*imult); -+ fprintf(stderr,"ionil %d ne %d itotc %d my_linkat %d mult %d\n", -+ ionil,ne,*itotc,my_linkat,*imult); - */ -- ne = ne - *itotc + linkat; -+ ne = ne - *itotc + my_linkat; - if (ne % 2 == *imult % 2) return(1); - return(0); - } |