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| author | bacon <bacon@pkgsrc.org> | 2022-12-12 18:39:36 +0000 |
|---|---|---|
| committer | bacon <bacon@pkgsrc.org> | 2022-12-12 18:39:36 +0000 |
| commit | 88617cd3c0dbcb3d207aea9f282a8e7fa08ec654 (patch) | |
| tree | a79359dba915db0135d6df4b6f6493d70541c961 | |
| parent | b3c41309edf57ffb85f91f260b309b05cf2503d7 (diff) | |
| download | pkgsrc-88617cd3c0dbcb3d207aea9f282a8e7fa08ec654.tar.gz | |
biology/rna-seq: Core tools needed for RNA-Seq analysis
The rna-seq meta-package provides the core tools needed for performing
a typical RNA-Seq differential gene expression analysis, including
adapter trimming, quality control, alignment, and identification of
differentially expressed genes. Researchers may want additional tools
for data manipulation, gene ontology, etc.
| -rw-r--r-- | biology/rna-seq/DESCR | 5 | ||||
| -rw-r--r-- | biology/rna-seq/Makefile | 23 |
2 files changed, 28 insertions, 0 deletions
diff --git a/biology/rna-seq/DESCR b/biology/rna-seq/DESCR new file mode 100644 index 00000000000..7f4a034ce4b --- /dev/null +++ b/biology/rna-seq/DESCR @@ -0,0 +1,5 @@ +The rna-seq meta-package provides the core tools needed for performing +a typical RNA-Seq differential gene expression analysis, including +adapter trimming, quality control, alignment, and identification of +differentially expressed genes. Researchers may want additional tools +for data manipulation, gene ontology, etc. diff --git a/biology/rna-seq/Makefile b/biology/rna-seq/Makefile new file mode 100644 index 00000000000..d800c341952 --- /dev/null +++ b/biology/rna-seq/Makefile @@ -0,0 +1,23 @@ +# $NetBSD: Makefile,v 1.1 2022/12/12 18:39:36 bacon Exp $ +# + +DISTNAME= rna-seq-1.0 +CATEGORIES= biology meta-pkgs +MASTER_SITES= # empty + +MAINTAINER= bacon@NetBSD.org +COMMENT= Core tools needed for RNA-Seq analysis + +DEPENDS+= fastq-trim>=0:../../biology/fastq-trim +DEPENDS+= fastqc>=0:../../biology/fastqc +DEPENDS+= biolibc-tools>=0:../../biology/biolibc-tools +DEPENDS+= gffread>=0:../../biology/gffread +DEPENDS+= kallisto>=0:../../biology/kallisto +DEPENDS+= hisat2>=0:../../biology/hisat2 +DEPENDS+= samtools>=0:../../biology/samtools +DEPENDS+= igv>=0:../../biology/igv +DEPENDS+= fasda>=0:../../biology/fasda + +META_PACKAGE= yes + +.include "../../mk/bsd.pkg.mk" |