diff options
| author | jschauma <jschauma@pkgsrc.org> | 2003-09-26 03:17:12 +0000 |
|---|---|---|
| committer | jschauma <jschauma@pkgsrc.org> | 2003-09-26 03:17:12 +0000 |
| commit | 046874d5544f4ab6d607fdc3540f9f78d0661c58 (patch) | |
| tree | edd9d8a863cbdce23ffe6169277f1ac43e077864 /biology/align/DESCR | |
| parent | a5c81ce9eebcb68fb4f7bac9900ab686c7149a30 (diff) | |
| download | pkgsrc-046874d5544f4ab6d607fdc3540f9f78d0661c58.tar.gz | |
Remove align after reimporting it as pdbalign. Sorry 'bout that.
Diffstat (limited to 'biology/align/DESCR')
| -rw-r--r-- | biology/align/DESCR | 11 |
1 files changed, 0 insertions, 11 deletions
diff --git a/biology/align/DESCR b/biology/align/DESCR deleted file mode 100644 index 54c1751e372..00000000000 --- a/biology/align/DESCR +++ /dev/null @@ -1,11 +0,0 @@ -Given a GCG multiple sequence alignment file (a GCG MSF file), which a -includes a sequence of known structure, the program pdbalign maps the -sequence variability onto the known structure. The central premise is -of course, that for a closely related family of proteins (sequence ID -> 40%) the 3-D structures will not be significantly different.pdbdist -calculates the distance from each atom in the pdb file to each atom in -the ligand and records the minimum in the temperature field for that -atom record.distalign reads the output from pdbdist and also the -original GCG MSF file and produces an MSF file annotated with a -measure of sequence variability and the distance of the residue at -that position (of the sequence of known structure) from the ligand. |